NO12G01970, NO12G01970 (gene) Nannochloropsis oceanica

Overview
NameNO12G01970
Unique NameNO12G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1483
Alignment locationchr12:558749..560231 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:558749..560231 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
GO:0030001metal ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036163HMA_dom_sf
IPR006121HeavyMe-assoc_HMA
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO12G01970 vs. NCBI_GenBank
Match: EWM25802.1 (hypothetical protein Naga_100021g51 [Nannochloropsis gaditana])

HSP 1 Score: 199.9 bits (507), Expect = 1.300e-47
Identity = 112/216 (51.85%), Postives = 147/216 (68.06%), Query Frame = 0
Query:  123 LAVVLLRKSRVGKGRLVELLAATVGGLLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQLHKKPLRSLPTWLVAVALASAPVLVRRLNRG----ELSMGSFNLASSLHGTTPRPVMLRYRVRGMKCEACANGLKNALEAM-GDLRADVIFEQGMVFLVADVATATEHRDGMTEGETAAASVLQTLEQGVADVMHDRGY 334
            L  +L RK R+ K RL+ELLAA+ GGLLSSSCCAVQ++LN+ S+GCAGFA LD  RP F+ LTFS+L YKT+ YD++ +K+  RS P+WLVAV L   P ++R+LNRG    EL+M S +L       +P  V+L+Y+V GMKCEACANGLK AL+A+  D+RA V +E+G+VFL+            M +G        + LEQGVA VM +RGY
Sbjct:  121 LLFLLCRKGRIRKARLLELLAASAGGLLSSSCCAVQVLLNTFSIGCAGFAALDHLRPFFISLTFSTLIYKTIVYDLRTYKQLWRSSPSWLVAVILTMFPTIMRKLNRGMGLRELTMLSGSLPCENKAASP-TVILQYKVEGMKCEACANGLKLALQALQSDVRARVFYEKGIVFLIR-----------MQKGADPDVETARDLEQGVAQVMKERGY 324          
BLAST of NO12G01970 vs. NCBI_GenBank
Match: XP_005643012.1 (hypothetical protein COCSUDRAFT_34498 [Coccomyxa subellipsoidea C-169] >EIE18468.1 hypothetical protein COCSUDRAFT_34498 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 97.1 bits (240), Expect = 1.100e-16
Identity = 70/154 (45.45%), Postives = 87/154 (56.49%), Query Frame = 0
Query:  146 VGGLLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQLHKKPLRSLPTWLVAVALASAPVLVRRLNRGELS-MGSFNLASSL----HGTTPRPVMLRYRVRGMKCEACANGLKNALEAM--GDLRADVIFEQGMVFL 293
            +GGLLSSSCC VQL LN  SVGCAGF+VL  +RPLF+ LT +SL Y  +      H  P RS+    +A++LA  P LV+  N  +L  M S  L SS        T + V+L   V G++C AC   LK AL A   G  R +V FE G V L
Sbjct:    1 MGGLLSSSCCLVQLALNLFSVGCAGFSVLTPYRPLFMGLTTASLGYSHLR-----HGNPQRSILALGMALSLAGMPELVQLYNESQLRLMRSLPLTSSPVSGDKALTQQQVIL--HVEGLRCAACGMRLKQALLAQVGGVQRCEVEFESGRVVL 147          
BLAST of NO12G01970 vs. NCBI_GenBank
Match: PRP79476.1 (hypothetical protein PROFUN_12602 [Planoprotostelium fungivorum] >PRP86533.1 hypothetical protein PROFUN_05171 [Planoprotostelium fungivorum])

HSP 1 Score: 93.2 bits (230), Expect = 1.700e-15
Identity = 59/138 (42.75%), Postives = 81/138 (58.70%), Query Frame = 0
Query:  138 LVELLAATVGGLLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQLHKKPL--RSLPTWLVAVALASAPVLVRRLNRGELSMGSFNLASSLHGTTPRPVMLRYRVRGMKCEACANGLKNAL 274
            L+   AA  GGLLSSSCC VQLVLN  S+GCAGF+VLD FR  FL +T+ +L YK V  D  L +  L   +  T L+ +AL+ +P +VR +N G LS            +    ++ R  + GM CE+CAN ++N +
Sbjct:    9 LLTYAAAISGGLLSSSCCVVQLVLNYFSIGCAGFSVLDPFRNTFLSITYGTLFYK-VWRDQTLGRGLLTRENAITSLIVLALSVSPTVVRSINHGRLS------------SEGDLIVKRVEITGMNCESCANSVRNGM 133          
BLAST of NO12G01970 vs. NCBI_GenBank
Match: EXX78525.1 (hypothetical protein RirG_014220 [Rhizophagus irregularis DAOM 197198w] >GBC22841.1 hypothetical protein RIR_0977600 [Rhizophagus irregularis DAOM 181602] >POG70912.1 hypothetical protein GLOIN_2v1611697 [Rhizophagus irregularis DAOM 181602=DAOM 197198])

HSP 1 Score: 86.3 bits (212), Expect = 2.000e-13
Identity = 45/132 (34.09%), Postives = 76/132 (57.58%), Query Frame = 0
Query:  144 ATVGGLLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQLHKKPLRSLPTWLVAVALASAPVLVRRLNRGELSMGSFNLASSLHGTTPRPVMLRYRVRGMKCEACANGLKNALEA 276
            A   GLL SSCC +QL+LN  S+ CAGF++L  +RP+FL  T   + Y    Y +       ++L T L++++L+++P L+   N+G++++  FNL   L   T    +   ++ G+ CE CAN +K   ++
Sbjct:   17 AITTGLLGSSCCIIQLILNIFSISCAGFSILTPYRPIFLSFTTVLILYTMTKYGL----NSKQTLVTLLISLSLSTSPELISLYNQGKITISPFNLEKPL---TEEVEIFVVQINGISCEGCANRIKTQFDS 141          
BLAST of NO12G01970 vs. NCBI_GenBank
Match: XP_021877284.1 (hypothetical protein BCR41DRAFT_361402 [Lobosporangium transversale] >ORZ05903.1 hypothetical protein BCR41DRAFT_361402 [Lobosporangium transversale])

HSP 1 Score: 84.3 bits (207), Expect = 7.700e-13
Identity = 64/186 (34.41%), Postives = 83/186 (44.62%), Query Frame = 0
Query:  142 LAATVGGLLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQLHKKPLRSLPTWLVAVALASAPVLVRRLNRGELSMGSFNLASSLHG-------------------------------------TTPRPVMLRY--RVRGMKCEACANGLKNA-LEAMGDLRADVIFEQ 288
            L A V GLLSSSCC VQLVLN+ S+GCAGF++L  FRP+F  +T   + Y TV Y     +   R+  T  +A+ L ++P +    NR   S    NL S L                                        TP   +LRY   + GM CEACAN L+   +   G   A V F+Q
Sbjct:   34 LPAVVLGLLSSSCCTVQLVLNAFSIGCAGFSILTPFRPVFSVITLLLITYTTVKY-----RFSSRTFITLSIAILLTASPEMASIYNRAPSSALQLNLNSVLPDLTLWPPKLLFQKNNFHRHTLATQQETQGALTTNQASFNTPSKALLRYDVHIEGMACEACANRLRQKFISQPGIEHAKVFFDQ 214          
BLAST of NO12G01970 vs. NCBI_GenBank
Match: OZJ02503.1 (hypothetical protein BZG36_04841, partial [Bifiguratus adelaidae])

HSP 1 Score: 82.8 bits (203), Expect = 2.200e-12
Identity = 58/146 (39.73%), Postives = 82/146 (56.16%), Query Frame = 0
Query:  149 LLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQLHKKPLRSLPTWLVAVALASAPVLVRRLNRGELSMGS----FNLASSLHG----TTPRPVMLRYRVRGMKCEACANGLKNALEAMGDLRADVIFE 287
            LLSSSCC +QLVLN  S+GCAG +VL  +R +F  L   SL Y+ ++   +L K  +  +   LVA+ LA +P +VR  N G L +GS        SSL       TP+       + GMKC+ACAN +K  L+A+  + A  +F+
Sbjct:   19 LLSSSCCVIQLVLNLFSIGCAGLSVLTPYRWIFTALLVLSL-YRILSTPPRLSKSKVLVV---LVALLLALSPEMVRTWNEGGLVVGSGAARLTRFSSLWNRGKVETPQQQQHVLAIEGMKCDACANRIKRQLQALPGVSAAKVFQ 160          
BLAST of NO12G01970 vs. NCBI_GenBank
Match: XP_013905101.1 (hypothetical protein MNEG_1875 [Monoraphidium neglectum] >KIZ06082.1 hypothetical protein MNEG_1875 [Monoraphidium neglectum])

HSP 1 Score: 76.6 bits (187), Expect = 1.600e-10
Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 0
Query:  125 VVLLRKSRVGKGRLVELLAATVGGLLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQLHKKPLRSLPTWLVAVALASAPVLVRRLNRGELSMGSFNLASSLHG-----TTPRPVMLRYR--VRGMKCEACANGLKNALEAMGDLR-ADVIFEQGMVFLVAD 296
            + + ++    +  L  +L A  GGLLSSSCC VQLVLNS+SVGCAGF+V   +R L   LT   LA     + +       R++ T + +V L  +   +  +NR           S  HG         P ++R+R  V GM+C+ACA  ++ ++ A+  +R A V   +G V + A+
Sbjct:    1 MAVAKRGAAARTDLAVVLGALTGGLLSSSCCIVQLVLNSLSVGCAGFSVFKPYRNLLRVLTAGMLALLLARHGVN-----RRTIGTVVCSVLLTFSEDALSVINRQGSLQDLLRHMSLPHGGGHPAVQRDPAIVRWRVDVDGMRCQACAARIRGSVAALPGVRNATVELAEGRVEVWAE 174          
BLAST of NO12G01970 vs. NCBI_GenBank
Match: ORY95245.1 (hypothetical protein BCR43DRAFT_492678 [Syncephalastrum racemosum])

HSP 1 Score: 72.8 bits (177), Expect = 2.300e-9
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 0
Query:  144 ATVG-GLLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFS--SLAYKTVTYDIQLHKKPLRSLPTWLVAVALASAPVLVRRLNRGELSMGSFNLASSLHGTTPRPVMLRYRVRGMKCEACANGLKNALEAMGDLRADVIFEQGMVFLV 294
            AT+G  LL+SSCC +QLVLN +S+ CAGFAVL  +RP F   T +  +LA++    +   +K       T  VA  L ++P LVR +N           AS+L     RP++L   + G+ C ACAN +K  L+ +  +   ++F      LV
Sbjct:   12 ATIGMALLASSCCVIQLVLNMLSISCAGFAVLTPYRPWFTLATLATMTLAWQRQKKNHDNNKSRRVLFWTGCVAAVLLASPELVRYMNES---------ASTL---DTRPIVL--ELDGLGCLACANKIKQGLKQVPGVADALVFFDNSTALV 150          
BLAST of NO12G01970 vs. NCBI_GenBank
Match: EPB85699.1 (hypothetical protein HMPREF1544_07525 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 71.6 bits (174), Expect = 5.200e-9
Identity = 46/128 (35.94%), Postives = 68/128 (53.12%), Query Frame = 0
Query:  149 LLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQLHKKPLRSLPTWLVAVALASAPVLVRRLNRGELSMGSFNLASSLHGTTPRP-VMLRYRVRGMKCEACANGLKNALEA 276
            LLSSSCC +QL+LN  SV CAGFAV   +R +   +T   L+Y   T    +  +    L   +V++ L  +P +V+ +N+          A++L  TT +     R  + G+ CEACAN +KN L A
Sbjct:   14 LLSSSCCVIQLILNFFSVSCAGFAVFTPYRSVLSTITILLLSYNLATTATAVQTR--HKLVVLIVSILLMVSPEVVQWVNQSS--------ATTLTATTTKSHQYYRIHLDGLGCEACANRIKNTLTA 131          
BLAST of NO12G01970 vs. NCBI_GenBank
Match: XP_018290190.1 (hypothetical protein PHYBLDRAFT_147124 [Phycomyces blakesleeanus NRRL 1555(-)] >OAD72150.1 hypothetical protein PHYBLDRAFT_147124 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 68.6 bits (166), Expect = 4.400e-8
Identity = 49/137 (35.77%), Postives = 69/137 (50.36%), Query Frame = 0
Query:  149 LLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQLHKKPLRSLPTWLVAVALASAPVLVRRLNRGELSMGSFNLASSLHGTTPRPVMLRYRVRGMKCEACANGLKNALEAMGDLRADVIF 286
            LLSSSCC +QL LN  S  CAGFAVL  FRP+   +T   L Y           K  +   T LV++ L  +P +V  +N+ +        +  L  TT   V L    +G+ C ACAN +K+AL A+  + +  +F
Sbjct:   22 LLSSSCCIIQLALNFFSFSCAGFAVLTPFRPILTAITIILLTYSFYARG----WKDKKMAGTTLVSIVLLVSPEIVEWINQNQTQ------SQFLAVTTTYLVQL----QGLGCIACANRIKSALLAVDVIESATVF 144          
The following BLAST results are available for this feature:
BLAST of NO12G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM25802.11.300e-4751.85hypothetical protein Naga_100021g51 [Nannochlorops... [more]
XP_005643012.11.100e-1645.45hypothetical protein COCSUDRAFT_34498 [Coccomyxa s... [more]
PRP79476.11.700e-1542.75hypothetical protein PROFUN_12602 [Planoprotosteli... [more]
EXX78525.12.000e-1334.09hypothetical protein RirG_014220 [Rhizophagus irre... [more]
XP_021877284.17.700e-1334.41hypothetical protein BCR41DRAFT_361402 [Lobosporan... [more]
OZJ02503.12.200e-1239.73hypothetical protein BZG36_04841, partial [Bifigur... [more]
XP_013905101.11.600e-1032.96hypothetical protein MNEG_1875 [Monoraphidium negl... [more]
ORY95245.12.300e-935.95hypothetical protein BCR43DRAFT_492678 [Syncephala... [more]
EPB85699.15.200e-935.94hypothetical protein HMPREF1544_07525 [Mucor circi... [more]
XP_018290190.14.400e-835.77hypothetical protein PHYBLDRAFT_147124 [Phycomyces... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL126nonsL126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR008ngnoR008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010156NSK010156Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01970.1NO12G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671439gene_5355Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g51gene4709Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01970.1NO12G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01970 ID=NO12G01970|Name=NO12G01970|organism=Nannochloropsis oceanica|type=gene|length=1483bp
ACAGGCCAACACAAGCCATGACTGGGCCTCGCATCAGCAGCTTCTTGTCT
CCTTGTAACAATCCGCCAGGAGGCGGCGCGGTATGTGGGCCTCTTGTTTC
AGGTGCTAACCGTATCGAAGGGAAGCCTCAGAATCACCCCGGCAAGGCAT
CTTCTTTCTCCTCCTCATCTGCCTCTTCTTGTGGCCTGATCTCGGAATCC
CTGCTCACATCCGCAGAGCTCGACAGCACAAGgtaaattttctgtagcaa
gcctcggtcgtgcccgtgttgggacggtccttacaccgaagggtgtgtta
aaagtagggctgcaacgacggcgctacgtattgccggatgagcggaacat
ttttgtcccttgttacatctgcctgtacggctgtcttgttgcgcagtgat
ggggtcgtacttaccacttgtttgctttccccgatattatccgcagTCTG
GCTTTGGAATCGACGCTAAAGGGAAAACTGGCCCGTCAAGGGCAAAGCAC
CATGCAGGCAGTGCTGTCGAGTCGGCGGCGTTCTACCATTCCACCTACGC
GGGCCACAAGAGCGACAGTGGCCACAGCCTTGGCAAGCATGGTGGTTCTG
GCTGTGGTCTTGCTACGGAAGAGTCGGGTGGGCAAAGGACGTTTAGTGGA
GTTGCTCGCGGCGACCGTTGGAGGTCTCCTTTCGTCGTCGTGTTGCGCCG
TCCAATTGGTCCTCAACTCCATCTCCGTGGGCTGCGCGGGCTTTGCGGTT
TTGGACCGTTTTCGACCGCTTTTTTTATTCTTGACCTTCTCAAGCCTAGC
TTACAAGACGGTGACATACGACATCCAACTGCACAAGAAACCCTTGCGCA
GTCTGCCTACTTGGCTTGTGGCCGTGGCCTTGGCCAGTGCACCGGTCCTG
GTGCGTCGCCTTAATCGTGGGGAGTTGAGCATGGGGAGCTTCAATTTGGC
TTCTTCTTTGCACGGAACCACACCACGGCCTGTAATGCTTCGATATAGGG
TGCGAGGCATGAAGTGTGAAGCATGTGCGAATGGACTGAAGAATGCGCTG
GAGGCCATGGGGGATTTGCGAGCAGACGTGATTTTTGAGCAGGGGATGGT
TTTTCTCGTGGCAGATGTAGCAACAGCAACAGAGCACCGCGATGGGATGA
CAGAAGGAGAGACAGCCGCGGCGAGTGTATTGCAGACGTTGGAGCAGGGC
GTTGCGGATGTGATGCATGACAGAGGGTACAGCTACCACAGCCTGTAGCC
GCGTCGAGCCTCGTGATATCCGCCGCTGTACGTAGAAAAGAATTCGGCAC
TGTATGAAAATGTAATATCTGTAAGACATGCACATAGCTTTGTATAGGGT
CGAGTATATAAAATGAGAAAGGATATAAATGCCCGTCTAAAAGCGAGAAT
CAAAAAGAAAGGACACCTTCTTGAAAATTGATGACACGATTAAGGAGTAT
CATTTTCAAGACAGGGAGTATGGTGACATTTCA
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protein sequence of NO12G01970.1

>NO12G01970.1-protein ID=NO12G01970.1-protein|Name=NO12G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MTGPRISSFLSPCNNPPGGGAVCGPLVSGANRIEGKPQNHPGKASSFSSS
SASSCGLISESLLTSAELDSTSLALESTLKGKLARQGQSTMQAVLSSRRR
STIPPTRATRATVATALASMVVLAVVLLRKSRVGKGRLVELLAATVGGLL
SSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQL
HKKPLRSLPTWLVAVALASAPVLVRRLNRGELSMGSFNLASSLHGTTPRP
VMLRYRVRGMKCEACANGLKNALEAMGDLRADVIFEQGMVFLVADVATAT
EHRDGMTEGETAAASVLQTLEQGVADVMHDRGYSYHSL*
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Synonyms
Publications