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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:558749..560231 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01970.1 vs.
Match: EWM25802.1 (hypothetical protein Naga_100021g51 [Nannochloropsis gaditana]) HSP 1 Score: 188.0 bits (476), Expect = 5.000e-44 Identity = 136/335 (40.60%), Postives = 192/335 (57.31%), Query Frame = 0
Query: 6 ISSFLSPCNNPPGGGAVCGPLVSGANRIEG--KPQNHPGKASSFSSSSASSCGLISESLLTSAELDSTSLALESTLKGKLARQGQSTMQAVLSSRRRSTIPPTRATRATVATALASMVVLAVVLLRKSRVGKGRLVELLAATVGGLLSSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQLHKKPLRSLPTWLVAVALASAPVLVRRLNRG----ELSMGSFNLASSLHGTTPRPVMLRYRVRGMKCEACANGLKNALEAM-GDLRADVIFEQGMVFLVADVATATEHRDGMTEGETAAASVLQTLEQGVADVMHDRGY 334
+S+FL P + P GA GP G +R G K P +SS A + + + + D + + ++ L ++ + + A + +S P T+ L ++ L L RK R+ K RL+ELLAA+ GGLLSSSCCAVQ++LN+ S+GCAGFA LD RP F+ LTFS+L YKT+ YD++ +K+ RS P+WLVAV L P ++R+LNRG EL+M S +L +P V+L+Y+V GMKCEACANGLK AL+A+ D+RA V +E+G+VFL+ M +G + LEQGVA VM +RGY
Sbjct: 9 VSTFL-PSSKYPRVGATGGP---GTDRPLGVHKGNEIPEVSSSLLYVPALNSKIEFNARCYKSLTDLSDVEMDLALCNQIVPFPRGSSVARRNRLWQSFTMPAPGIATTILVGLMGLLFL---LCRKGRIRKARLLELLAASAGGLLSSSCCAVQVLLNTFSIGCAGFAALDHLRPFFISLTFSTLIYKTIVYDLRTYKQLWRSSPSWLVAVILTMFPTIMRKLNRGMGLRELTMLSGSLPCENKAASP-TVILQYKVEGMKCEACANGLKLALQALQSDVRARVFYEKGIVFLIR-----------MQKGADPDVETARDLEQGVAQVMKERGY 324
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01970.1 ID=NO12G01970.1|Name=NO12G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp ACAGGCCAACACAAGCCATGACTGGGCCTCGCATCAGCAGCTTCTTGTCT CCTTGTAACAATCCGCCAGGAGGCGGCGCGGTATGTGGGCCTCTTGTTTC AGGTGCTAACCGTATCGAAGGGAAGCCTCAGAATCACCCCGGCAAGGCAT CTTCTTTCTCCTCCTCATCTGCCTCTTCTTGTGGCCTGATCTCGGAATCC CTGCTCACATCCGCAGAGCTCGACAGCACAAGTCTGGCTTTGGAATCGAC GCTAAAGGGAAAACTGGCCCGTCAAGGGCAAAGCACCATGCAGGCAGTGC TGTCGAGTCGGCGGCGTTCTACCATTCCACCTACGCGGGCCACAAGAGCG ACAGTGGCCACAGCCTTGGCAAGCATGGTGGTTCTGGCTGTGGTCTTGCT ACGGAAGAGTCGGGTGGGCAAAGGACGTTTAGTGGAGTTGCTCGCGGCGA CCGTTGGAGGTCTCCTTTCGTCGTCGTGTTGCGCCGTCCAATTGGTCCTC AACTCCATCTCCGTGGGCTGCGCGGGCTTTGCGGTTTTGGACCGTTTTCG ACCGCTTTTTTTATTCTTGACCTTCTCAAGCCTAGCTTACAAGACGGTGA CATACGACATCCAACTGCACAAGAAACCCTTGCGCAGTCTGCCTACTTGG CTTGTGGCCGTGGCCTTGGCCAGTGCACCGGTCCTGGTGCGTCGCCTTAA TCGTGGGGAGTTGAGCATGGGGAGCTTCAATTTGGCTTCTTCTTTGCACG GAACCACACCACGGCCTGTAATGCTTCGATATAGGGTGCGAGGCATGAAG TGTGAAGCATGTGCGAATGGACTGAAGAATGCGCTGGAGGCCATGGGGGA TTTGCGAGCAGACGTGATTTTTGAGCAGGGGATGGTTTTTCTCGTGGCAG ATGTAGCAACAGCAACAGAGCACCGCGATGGGATGACAGAAGGAGAGACA GCCGCGGCGAGTGTATTGCAGACGTTGGAGCAGGGCGTTGCGGATGTGAT GCATGACAGAGGGTACAGCTACCACAGCCTGTAGCCGCGTCGAGCCTCGT GATATCCGCCGCTGTACGTAGAAAAGAATTCGGCACTGTATGAAAATGTA ATATCTGTAAGACATGCACATAGCTTTGTATAGGGTCGAGTATATAAAAT GAGAAAGGATATAAATGCCCGTCTAAAAGCGAGAATCAAAAAGAAAGGAC ACCTTCTTGAAAATTGATGACACGATTAAGGAGTATCATTTTCAAGACAG GGAGTATGGTGACATTTCA back to topprotein sequence of NO12G01970.1 >NO12G01970.1-protein ID=NO12G01970.1-protein|Name=NO12G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp MTGPRISSFLSPCNNPPGGGAVCGPLVSGANRIEGKPQNHPGKASSFSSS SASSCGLISESLLTSAELDSTSLALESTLKGKLARQGQSTMQAVLSSRRR STIPPTRATRATVATALASMVVLAVVLLRKSRVGKGRLVELLAATVGGLL SSSCCAVQLVLNSISVGCAGFAVLDRFRPLFLFLTFSSLAYKTVTYDIQL HKKPLRSLPTWLVAVALASAPVLVRRLNRGELSMGSFNLASSLHGTTPRP VMLRYRVRGMKCEACANGLKNALEAMGDLRADVIFEQGMVFLVADVATAT EHRDGMTEGETAAASVLQTLEQGVADVMHDRGYSYHSL* back to topmRNA from alignment at chr12:558749..560231+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01970.1 ID=NO12G01970.1|Name=NO12G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1483bp|location=Sequence derived from alignment at chr12:558749..560231+ (Nannochloropsis oceanica) ACAGGCCAACACAAGCCATGACTGGGCCTCGCATCAGCAGCTTCTTGTCT
CCTTGTAACAATCCGCCAGGAGGCGGCGCGGTATGTGGGCCTCTTGTTTC
AGGTGCTAACCGTATCGAAGGGAAGCCTCAGAATCACCCCGGCAAGGCAT
CTTCTTTCTCCTCCTCATCTGCCTCTTCTTGTGGCCTGATCTCGGAATCC
CTGCTCACATCCGCAGAGCTCGACAGCACAAGGTAAATTTTCTGTAGCAA
GCCTCGGTCGTGCCCGTGTTGGGACGGTCCTTACACCGAAGGGTGTGTTA
AAAGTAGGGCTGCAACGACGGCGCTACGTATTGCCGGATGAGCGGAACAT
TTTTGTCCCTTGTTACATCTGCCTGTACGGCTGTCTTGTTGCGCAGTGAT
GGGGTCGTACTTACCACTTGTTTGCTTTCCCCGATATTATCCGCAGTCTG
GCTTTGGAATCGACGCTAAAGGGAAAACTGGCCCGTCAAGGGCAAAGCAC
CATGCAGGCAGTGCTGTCGAGTCGGCGGCGTTCTACCATTCCACCTACGC
GGGCCACAAGAGCGACAGTGGCCACAGCCTTGGCAAGCATGGTGGTTCTG
GCTGTGGTCTTGCTACGGAAGAGTCGGGTGGGCAAAGGACGTTTAGTGGA
GTTGCTCGCGGCGACCGTTGGAGGTCTCCTTTCGTCGTCGTGTTGCGCCG
TCCAATTGGTCCTCAACTCCATCTCCGTGGGCTGCGCGGGCTTTGCGGTT
TTGGACCGTTTTCGACCGCTTTTTTTATTCTTGACCTTCTCAAGCCTAGC
TTACAAGACGGTGACATACGACATCCAACTGCACAAGAAACCCTTGCGCA
GTCTGCCTACTTGGCTTGTGGCCGTGGCCTTGGCCAGTGCACCGGTCCTG
GTGCGTCGCCTTAATCGTGGGGAGTTGAGCATGGGGAGCTTCAATTTGGC
TTCTTCTTTGCACGGAACCACACCACGGCCTGTAATGCTTCGATATAGGG
TGCGAGGCATGAAGTGTGAAGCATGTGCGAATGGACTGAAGAATGCGCTG
GAGGCCATGGGGGATTTGCGAGCAGACGTGATTTTTGAGCAGGGGATGGT
TTTTCTCGTGGCAGATGTAGCAACAGCAACAGAGCACCGCGATGGGATGA
CAGAAGGAGAGACAGCCGCGGCGAGTGTATTGCAGACGTTGGAGCAGGGC
GTTGCGGATGTGATGCATGACAGAGGGTACAGCTACCACAGCCTGTAGCC
GCGTCGAGCCTCGTGATATCCGCCGCTGTACGTAGAAAAGAATTCGGCAC
TGTATGAAAATGTAATATCTGTAAGACATGCACATAGCTTTGTATAGGGT
CGAGTATATAAAATGAGAAAGGATATAAATGCCCGTCTAAAAGCGAGAAT
CAAAAAGAAAGGACACCTTCTTGAAAATTGATGACACGATTAAGGAGTAT
CATTTTCAAGACAGGGAGTATGGTGACATTTCA back to topCoding sequence (CDS) from alignment at chr12:558749..560231+ >NO12G01970.1 ID=NO12G01970.1|Name=NO12G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at chr12:558749..560231+ (Nannochloropsis oceanica) ATGACTGGGCCTCGCATCAGCAGCTTCTTGTCTCCTTGTAACAATCCGCC AGGAGGCGGCGCGGTATGTGGGCCTCTTGTTTCAGGTGCTAACCGTATCG AAGGGAAGCCTCAGAATCACCCCGGCAAGGCATCTTCTTTCTCCTCCTCA TCTGCCTCTTCTTGTGGCCTGATCTCGGAATCCCTGCTCACATCCGCAGA GCTCGACAGCACAAGTCTGGCTTTGGAATCGACGCTAAAGGGAAAACTGG CCCGTCAAGGGCAAAGCACCATGCAGGCAGTGCTGTCGAGTCGGCGGCGT TCTACCATTCCACCTACGCGGGCCACAAGAGCGACAGTGGCCACAGCCTT GGCAAGCATGGTGGTTCTGGCTGTGGTCTTGCTACGGAAGAGTCGGGTGG GCAAAGGACGTTTAGTGGAGTTGCTCGCGGCGACCGTTGGAGGTCTCCTT TCGTCGTCGTGTTGCGCCGTCCAATTGGTCCTCAACTCCATCTCCGTGGG CTGCGCGGGCTTTGCGGTTTTGGACCGTTTTCGACCGCTTTTTTTATTCT TGACCTTCTCAAGCCTAGCTTACAAGACGGTGACATACGACATCCAACTG CACAAGAAACCCTTGCGCAGTCTGCCTACTTGGCTTGTGGCCGTGGCCTT GGCCAGTGCACCGGTCCTGGTGCGTCGCCTTAATCGTGGGGAGTTGAGCA TGGGGAGCTTCAATTTGGCTTCTTCTTTGCACGGAACCACACCACGGCCT GTAATGCTTCGATATAGGGTGCGAGGCATGAAGTGTGAAGCATGTGCGAA TGGACTGAAGAATGCGCTGGAGGCCATGGGGGATTTGCGAGCAGACGTGA TTTTTGAGCAGGGGATGGTTTTTCTCGTGGCAGATGTAGCAACAGCAACA GAGCACCGCGATGGGATGACAGAAGGAGAGACAGCCGCGGCGAGTGTATT GCAGACGTTGGAGCAGGGCGTTGCGGATGTGATGCATGACAGAGGGTACA GCTACCACAGCCTGTAG back to top
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