NO12G01950, NO12G01950 (gene) Nannochloropsis oceanica

Overview
NameNO12G01950
Unique NameNO12G01950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1989
Alignment locationchr12:553790..555778 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrna-dihydrouridine synthase a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:553790..555778 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0002943tRNA dihydrouridine synthesis
GO:0008033tRNA processing
GO:0055114oxidation-reduction process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR004653DusA
IPR001269tRNA_hU_synthase
Homology
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_010695132.1 (PREDICTED: uncharacterized protein LOC104907829 isoform X1 [Beta vulgaris subsp. vulgaris] >KMT18818.1 hypothetical protein BVRB_2g029250 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 308.1 bits (788), Expect = 4.300e-80
Identity = 158/368 (42.93%), Postives = 233/368 (63.32%), Query Frame = 0
Query:   75 GGGHDEMTGPLLLDER-----ISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPF-YWSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREGGRLRRL--LTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKPGSPSIPAP 435
            G GH    G  ++  R      S+APMME+TD H+R   R++SK   LYTEM+ A T+   K + DRFL FN P +HP+VLQ+GG++   +++A+++A  Y YD INLNCGCPS RV G GCFG  LM +P+ V +  + +   ++  +P+TVKCRIGVDD DSY +L +F+ +VS  SP +HF++H+RKA+L G+SP +NR +PPLKY + Y L ++FP L+FT+NGG+ S E+V   LK+G HGVMVGRA     +    D+D+ +YGA   +  LTR ++LH+Y  YA+    ++G     +  L KP+ +LF  EP    ++  +D A    T  V+Q+L+    ++P  +L+    SP+   P
Sbjct:   46 GTGHTSHKGSQMVVARYPPPLFSVAPMMEWTDNHYRMLARIISKNAWLYTEMLAAETIVYQKGNLDRFLAFN-PEQHPIVLQIGGNNLENIAKATQLANAYGYDEINLNCGCPSPRVVGHGCFGVRLMLDPKFVGEAMSVIAANTD--VPVTVKCRIGVDDYDSYNELCDFIYKVSSTSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYYYSLVRDFPDLQFTINGGINSIEEVNAALKKGAHGVMVGRAAYNNTWQLLRDVDSEVYGAPPSD--LTRRQVLHKYQEYADSVLGKQGNNRPNIRDLVKPLLNLFHSEPRNAVWKRNVDAAFFRCTT-VKQLLDETLVIIPDYVLD----SPAARVP 403          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_006392235.1 (uncharacterized protein LOC18010252 [Eutrema salsugineum] >ESQ29521.1 hypothetical protein EUTSA_v10023495mg [Eutrema salsugineum])

HSP 1 Score: 307.4 bits (786), Expect = 7.300e-80
Identity = 170/383 (44.39%), Postives = 238/383 (62.14%), Query Frame = 0
Query:   59 MSIKSA-HRMDEIRGATGGGHDEMTGPLLLDERISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFY-WSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREG-GRLR-RLLTKPVHHLFAGEPMGKRFRAALDQALLD-PTLGVRQVLETATAVLPPALLEVKPGSPSIPAPET 437
            M IKS+ H    I   T       T    L    S+APMME+TD H+R   RL++K   LYTEMI A T+   +++ D+FL F +P +HP+VLQ+GGS+   L++A+++A  Y YD INLNCGCPS +V+G GCFG +LM  P+ V D  +A+ + +   +P+TVKCRIGVDD DSY++L +FV +VS  SP RHF+VH+RKA+LGG+SP  NRR+PPLKY + Y L ++FP LRFT+NGG+ S   V   LKEG HGVMVGRA    P+     +D  +YG    + GLTR ++L QY  Y +     +G GR   R L KP+ ++F  E     ++   D A  +  T+G   +LE +   +P ++L+    SP   +PE+
Sbjct:   14 MMIKSSFHXXXXILKLTCKFSTTTTSSPYLPPLFSIAPMMEWTDNHYRTLARLITKHAWLYTEMIAAQTIVHQQNNLDKFLAF-SPQQHPIVLQIGGSNVESLTKAAKLADAYGYDEINLNCGCPSPKVAGHGCFGVSLMLNPKLVGDAMSAIADNT--NVPVTVKCRIGVDDHDSYDELCDFVYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSISMVNASLKEGAHGVMVGRAAYNNPWQTLGHVDTAVYGV--PSSGLTRRQVLEQYQVYGDAILGTQGNGRPNVRDLVKPLLNIFHSENGNSLWKRRADAAFRECKTVG--SLLEESLKAIPDSVLD----SPIAVSPES 385          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_009105786.1 (PREDICTED: uncharacterized protein LOC103831645 isoform X1 [Brassica rapa])

HSP 1 Score: 306.6 bits (784), Expect = 1.200e-79
Identity = 161/349 (46.13%), Postives = 229/349 (65.62%), Query Frame = 0
Query:   92 SLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFYWSD-IDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREG-GRLR-RLLTKPVHHLFAGEPMGKRFRAALDQALLD-PTLGVRQVLETATAVLPPALLEVKPGSPSIPAPET 437
            S+APMME+TD H+R   R+++K   LYTEMI A TL   + + DRFL F +P +HP+VLQLGGS+   L++A++++ PY YD INLNCGCPS +V+G GCFG +LM  P+ V +  +A+ + +   +P+TVKCRIGVDD DSY++L +FV +VS  SP RHF+VH+RKA+LGG+SP  NRR+PPLKY + Y L ++FP LRFT+NGG+ S   V   L+EG +GVMVGRA    P+     +D  +YG    + GLTR ++L QY  YA+     +G GR   R L KP+ ++F  E     ++   D A  +  T+G   +LE +   +P ++L+    SP   +PE+
Sbjct:   53 SVAPMMEWTDNHYRTLARIITKHAWLYTEMIAAQTLVHQQTNLDRFLAF-SPQQHPIVLQLGGSNVESLAKAAKLSHPYGYDEINLNCGCPSPKVAGHGCFGVSLMLNPKLVGEAMSAIADNT--NVPVTVKCRIGVDDHDSYDELCDFVYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSISKVNAALREGAYGVMVGRAAYNNPWQTLGLVDTAVYGV--PSSGLTRRQVLEQYQVYADSVLGTQGNGRPNVRDLVKPLLNIFHSENENSLWKRKADAAFKECKTVG--SLLEESLKAIPDSVLD----SPISESPES 390          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_010695141.1 (PREDICTED: uncharacterized protein LOC104907829 isoform X2 [Beta vulgaris subsp. vulgaris] >KMT18817.1 hypothetical protein BVRB_2g029250 isoform A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 305.8 bits (782), Expect = 2.100e-79
Identity = 153/346 (44.22%), Postives = 226/346 (65.32%), Query Frame = 0
Query:   92 SLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPF-YWSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREGGRLRRL--LTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKPGSPSIPAP 435
            S+APMME+TD H+R   R++SK   LYTEM+ A T+   K + DRFL FN P +HP+VLQ+GG++   +++A+++A  Y YD INLNCGCPS RV G GCFG  LM +P+ V +  + +   ++  +P+TVKCRIGVDD DSY +L +F+ +VS  SP +HF++H+RKA+L G+SP +NR +PPLKY + Y L ++FP L+FT+NGG+ S E+V   LK+G HGVMVGRA     +    D+D+ +YGA   +  LTR ++LH+Y  YA+    ++G     +  L KP+ +LF  EP    ++  +D A    T  V+Q+L+    ++P  +L+    SP+   P
Sbjct:   12 SVAPMMEWTDNHYRMLARIISKNAWLYTEMLAAETIVYQKGNLDRFLAFN-PEQHPIVLQIGGNNLENIAKATQLANAYGYDEINLNCGCPSPRVVGHGCFGVRLMLDPKFVGEAMSVIAANTD--VPVTVKCRIGVDDYDSYNELCDFIYKVSSTSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYYYSLVRDFPDLQFTINGGINSIEEVNAALKKGAHGVMVGRAAYNNTWQLLRDVDSEVYGAPPSD--LTRRQVLHKYQEYADSVLGKQGNNRPNIRDLVKPLLNLFHSEPRNAVWKRNVDAAFFRCTT-VKQLLDETLVIIPDYVLD----SPAARVP 347          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_024368043.1 (uncharacterized protein LOC112278670 isoform X4 [Physcomitrella patens] >XP_024368044.1 uncharacterized protein LOC112278670 isoform X4 [Physcomitrella patens])

HSP 1 Score: 305.8 bits (782), Expect = 2.100e-79
Identity = 168/334 (50.30%), Postives = 220/334 (65.87%), Query Frame = 0
Query:   96 MMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPF-YWSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREGGRLR--RLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKP 427
            MM++TD H+R   RL+SK   LYTEM+ A T+   +D+ D+FLKFN   +HP+VLQLGGSDP  L +AS +A  Y YD INLNCGCPSE+V+G GCFGA+LM E   VA+   A+ EGS G  P+TVKCRIGVDD DSY+ L +FV  VS +SP +HFVVHARKAIL GLSP  NR +PPLKY +VY L ++FP+L+FTLNGGV++   V   L+EGV GVM+GRA    P+    ++D  +YG     P LTR +IL +Y  YA+ E  + G +    R L KP+  +F  E     +R A+D +L +    V  +L+    VLP  +L+  P
Sbjct:    1 MMDWTDNHYRTLARLMSKHAWLYTEMVVADTIIHQQDNLDKFLKFN-EVQHPIVLQLGGSDPEKLLKASLLASVYEYDEINLNCGCPSEKVAGHGCFGASLMLESGLVAECMAAIAEGSPG-TPVTVKCRIGVDDFDSYDLLHKFVTTVSSSSPTQHFVVHARKAILKGLSPAANRTIPPLKYEYVYALIRDFPNLKFTLNGGVVNTHQVNEALQEGVFGVMLGRAAYNYPWATLGNVDNSVYG--DSTPRLTRRQILEKYVEYADAELHKYGPKKPSVRHLVKPLLGIFHAESGAGVWRRAVDNSLRNAET-VGALLKETLCVLPDFVLDSPP 329          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_009105787.1 (PREDICTED: uncharacterized protein LOC103831645 isoform X2 [Brassica rapa])

HSP 1 Score: 305.4 bits (781), Expect = 2.800e-79
Identity = 160/350 (45.71%), Postives = 229/350 (65.43%), Query Frame = 0
Query:   91 ISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFYWSD-IDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREG-GRLR-RLLTKPVHHLFAGEPMGKRFRAALDQALLD-PTLGVRQVLETATAVLPPALLEVKPGSPSIPAPET 437
            + +APMME+TD H+R   R+++K   LYTEMI A TL   + + DRFL F +P +HP+VLQLGGS+   L++A++++ PY YD INLNCGCPS +V+G GCFG +LM  P+ V +  +A+ + +   +P+TVKCRIGVDD DSY++L +FV +VS  SP RHF+VH+RKA+LGG+SP  NRR+PPLKY + Y L ++FP LRFT+NGG+ S   V   L+EG +GVMVGRA    P+     +D  +YG    + GLTR ++L QY  YA+     +G GR   R L KP+ ++F  E     ++   D A  +  T+G   +LE +   +P ++L+    SP   +PE+
Sbjct:   16 LRVAPMMEWTDNHYRTLARIITKHAWLYTEMIAAQTLVHQQTNLDRFLAF-SPQQHPIVLQLGGSNVESLAKAAKLSHPYGYDEINLNCGCPSPKVAGHGCFGVSLMLNPKLVGEAMSAIADNT--NVPVTVKCRIGVDDHDSYDELCDFVYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSISKVNAALREGAYGVMVGRAAYNNPWQTLGLVDTAVYGV--PSSGLTRRQVLEQYQVYADSVLGTQGNGRPNVRDLVKPLLNIFHSENENSLWKRKADAAFKECKTVG--SLLEESLKAIPDSVLD----SPISESPES 354          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: KFK35503.1 (hypothetical protein AALP_AA5G293100 [Arabis alpina])

HSP 1 Score: 305.1 bits (780), Expect = 3.600e-79
Identity = 161/349 (46.13%), Postives = 223/349 (63.90%), Query Frame = 0
Query:   92 SLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFY-WSDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREG-GRLR-RLLTKPVHHLFAGEPMGKRFRAALDQALLD-PTLGVRQVLETATAVLPPALLEVKPGSPSIPAPET 437
            S+APMME+TD H+R   RL+SK   LYTEMI A TL   + + DRFL F +P +HP+VLQ+GGS+   L+ A+++++ Y YD INLNCGCPS +V+G GCFG +LM  P+ V +  +A+   +   +P+TVKCRIGVDD DSY++L +FV +VS  SP RHF+VH+RKA+LGG+SP  NRR+PPLKY + Y L ++FP LRFT+NGG+ S  +V   LKEG HGVM+GRA    P+     +D  +YG    + GLTR ++L QY  Y +      G GR   R + KP+ +LF  E     ++   D A  +  T+G   +LE +   +P  +L+    SP    P T
Sbjct:   36 SVAPMMEWTDNHYRTLARLISKHAWLYTEMIAAETLVHQQTNLDRFLAF-SPHQHPIVLQIGGSNVQNLANAAKLSVAYGYDEINLNCGCPSPKVAGHGCFGVSLMLNPKLVGEAMSAIAANT--NVPVTVKCRIGVDDHDSYDELCDFVHKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSEVNAALKEGAHGVMIGRAAYNNPWQTLGHVDTTVYGV--PSSGLTRRQVLEQYQEYGDSVLGTHGNGRPNVRDIVKPLLNLFHSENGNSLWKRRADAAFRECKTVG--SLLEESLKAIPDCVLD----SPITETPGT 373          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_013701604.1 (uncharacterized protein LOC106405631 [Brassica napus])

HSP 1 Score: 304.7 bits (779), Expect = 4.700e-79
Identity = 161/349 (46.13%), Postives = 227/349 (65.04%), Query Frame = 0
Query:   92 SLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFYWSD-IDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREG-GRLR-RLLTKPVHHLFAGEPMGKRFRAALDQALLD-PTLGVRQVLETATAVLPPALLEVKPGSPSIPAPET 437
            S+APMME+TD H+R   R+++K   LYTEMI A TL   + + DRFL F  P +HP+VLQLGGS+   L++A++++  Y YD INLNCGCPS +V+G GCFG +LM  P+ V +  +A+ + +   +P+TVKCRIGVDD DSY++L +FV +VS  SP RHF+VH+RKA+LGG+SP  NRR+PPLKY + Y L ++FP L+FT+NGG+ S   V   LKEG HGVMVGRA    P+     +D  +YG    + GLTR ++L QY  YA+     +G GR   R L KP+ ++F  E     ++   D A  +  T+G   +LE +   +P ++L+    SP   +PE+
Sbjct:   50 SVAPMMEWTDNHYRTLARIITKHAWLYTEMIAAQTLVHQQTNLDRFLAF-PPQQHPIVLQLGGSNVESLAKAAKLSHAYGYDEINLNCGCPSPKVAGHGCFGVSLMLNPKLVGEAMSAIADNA--NVPVTVKCRIGVDDHDSYDELCDFVYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLKFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGLVDTAVYGV--PSSGLTRRQVLEQYQVYADSVLGTQGNGRPNVRDLVKPLLNIFHSENGNSLWKRRADAAFKECKTVG--SLLEESLKAIPDSVLD----SPISESPES 387          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: PTQ45903.1 (hypothetical protein MARPO_0013s0118 [Marchantia polymorpha])

HSP 1 Score: 303.9 bits (777), Expect = 8.000e-79
Identity = 170/410 (41.46%), Postives = 239/410 (58.29%), Query Frame = 0
Query:   48 IGKRMIMIPKSMSIKSAHR-----------MDEIRGATGGGHDEMTG----PLLLDERISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFYWSDI---DARLYGAVGENPGLTRGEILHQYGAYAEEEDVREGGRLR--RLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKPGSPSIPAPETV 438
            +G R + +P+ +     H            ++EIR           G    P      +S+APMM++TD ++R   RL+++   LYTEM+ A T+    D+  RFL + A ++HP+ LQ+GGS+   L++A+++A  Y YD INLNCGCPS++V+G GCFGA+LM +PE V      + +  +  +P+TVKCRIGVD+ DSYE+L  F+  VS  SP   FV+HARKAIL GLSP +NR VPPLKY +VY L ++FPHL+F LNGG+ S  + +  +  G +GVM+GRA    P  W+ +   D+ LYG  G  PGLTR +IL +Y  YA+    + G      R L KP+ HLF  EP   R+R A+D+  L     V+ VLE    VLP  +L+  P  P  P    V
Sbjct:   17 LGAREVFVPRGLGSFGFHEHRPKLRCCRASLEEIRPPPAFNFSAADGVSVAPRKYPPLLSVAPMMDWTDNYYRTLARLMTRCSWLYTEMVVAETIVHQADNLGRFLDYPA-SQHPIALQIGGSNLVNLAKAAQLASTYGYDEINLNCGCPSDKVAGHGCFGASLMLKPELVGQAMAVIADNCD--VPVTVKCRIGVDNYDSYEELCTFIETVSSMSPTEVFVIHARKAILKGLSPAENRTVPPLKYEYVYALIRDFPHLKFVLNGGITSILEAKYAVDRGAYGVMIGRAAYNCP--WTTLGSADSILYGEPG--PGLTRRQILEKYALYADSTIGKYGPHRPNIRTLVKPLVHLFHAEPGASRWRRAVDET-LQVRKTVQGVLEGTLQVLPDYVLDAPPPIPESPGDSLV 418          
BLAST of NO12G01950 vs. NCBI_GenBank
Match: XP_020881765.1 (uncharacterized protein LOC9314589 isoform X1 [Arabidopsis lyrata subsp. lyrata] >EFH52985.1 hypothetical protein ARALYDRAFT_486864 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 303.5 bits (776), Expect = 1.000e-78
Identity = 162/353 (45.89%), Postives = 223/353 (63.17%), Query Frame = 0
Query:   87 LDERISLAPMMEYTDRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVLQLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREPERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPVRHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVLSYEDVETHLKEGVHGVMVGRAIIARPFYW-SDIDARLYGAVGENPGLTRGEILHQYGAYAEEEDVREG-GRLR-RLLTKPVHHLFAGEPMGKRFRAALDQALLDPTLGVRQVLETATAVLPPALLEVKPGSPSIPAPET 437
            L    S+APMME+TD H+R   RL++K   LYTEMI A TL   + + DRFL F +P +HP+VLQLGGS+   L++A++++  Y YD INLNCGCPS +V+G GCFG  LM +P+ V +  +A+   +   +P+TVKCRIGVDD DSY++L +F+ +VS  SP RHF+VH+RKA+LGG+SP  NRR+PPLKY + Y L ++FP LRFT+NGG+ S   V   LKEG HGVMVGRA    P+     +D  +YG    + GLTR ++L QY  Y +      G GR   R L KP+ +LF  E     ++   D A  +    V  +LE +   +P  +L+    SP   +PE+
Sbjct:   35 LPPSFSVAPMMEWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQANLDRFLAF-SPQQHPIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVRLMLKPKLVGEAMSAIAANT--NVPVTVKCRIGVDDHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYFYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQMLGHVDTAVYGV--PSRGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRADAAFKE-CRSVGSLLEESLRAIPDCVLD----SPISGSPES 377          
The following BLAST results are available for this feature:
BLAST of NO12G01950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_010695132.14.300e-8042.93PREDICTED: uncharacterized protein LOC104907829 is... [more]
XP_006392235.17.300e-8044.39uncharacterized protein LOC18010252 [Eutrema salsu... [more]
XP_009105786.11.200e-7946.13PREDICTED: uncharacterized protein LOC103831645 is... [more]
XP_010695141.12.100e-7944.22PREDICTED: uncharacterized protein LOC104907829 is... [more]
XP_024368043.12.100e-7950.30uncharacterized protein LOC112278670 isoform X4 [P... [more]
XP_009105787.12.800e-7945.71PREDICTED: uncharacterized protein LOC103831645 is... [more]
KFK35503.13.600e-7946.13hypothetical protein AALP_AA5G293100 [Arabis alpin... [more]
XP_013701604.14.700e-7946.13uncharacterized protein LOC106405631 [Brassica nap... [more]
PTQ45903.18.000e-7941.46hypothetical protein MARPO_0013s0118 [Marchantia p... [more]
XP_020881765.11.000e-7845.89uncharacterized protein LOC9314589 isoform X1 [Ara... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010120NSK010120Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01950.1NO12G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592242gene_5353Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100021g12gene4676Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01950.1NO12G01950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01950 ID=NO12G01950|Name=NO12G01950|organism=Nannochloropsis oceanica|type=gene|length=1989bp
AGACAGCACAGCTCACAGCGGAGGACTAGAGACAAACACTTCTCGTCTTG
CGCATGTCCAGAGGTCGAAGCCCCCGGCGAAGAAGGCGTCGCGCTCCCTT
CCTAATCATCGTCATCATGCTCGCCGCCGTCACCAGTGGCCTGGCCTTTG
TACAGCAGCAGGCGCGTCTCCCTGCAAAGCTGCGGAAGCTTACGATAGGG
AAGCGAATGATTATGATACCTAAATCGATGAGTATTAAAAGCGCTCATCG
AATGGACGAAATAAGAGGTGCTACAGGTGGTGGACATGATGAGATGACCG
GTCCCTTGCTTCTAGACGAGAGGATTTCACTCGCCCCCATGATGGAGTAC
ACTGACAGgtatgaaggtaatatgtgggcgcattttgctcaagacatacg
ggaggtaattgtttggcgtgtatgccccacgacggcagtcgaaggaatga
ggaactccctctagtcatcgtgctcacgtccctaccgctcccaattttcg
acagGCACTTCCGTTTTTTCCTTCGCCTCCTTTCGAAACGCATGGTCCTC
TACACTGAAATGATTACGGCCCCTACCCTCTACCTAAACAAAGACAGCCG
AGACCGCTTTCTCAAATTTAATGCCCCCGCCGAGCATCCTGTCGTGCTAC
AACTTGGTGGCTCCGACCCTTTTTTGCTGTCAGAAGCGAGCCGGATTGCT
CTTCCCTACAACTATGATGCAATAAATTTAAATTGTGGGTGCCCGAGTGA
GCGAGTATCGGGAAGGGGATGTTTTGGTGCAGCGCTGATGCGGGAGCCTG
AACGGGTGGCAGATATATGTACAGCTATGGGGGAGGGAAGTGAGGGAAGA
ATTCCGATTACGGTGAAGTGTAGGATTGGGGTGGATGATGAAGATAGCTA
TGAGCAACTGGCGGAATTTGTACGGCGAGTTTCGTGTGCTTCGCCGGTCA
GGCATTTTGTAGTCCATGCCCGCAAGGCGATCTTGGGGGGGTTGAGTCCT
GATCAGAATCGGAGGGTCCCTCCTTTGAAGTATCCGTTTGTCTATCGTTT
GTGTAAAGAGTTTCCGCACTTGAGATTTACATTGAATGGGGGAGTGTTGT
CTTATGAAGATGTGGAGACTCATTTGAAGGAGGGCGTGCACGGTGTGATG
GTGGGCAGGGCTATCATTGCCAGGCCGTTTTATTGGTCTGACATTGATGC
ACGGCTTTACGGGGCAGTGGGGGAGAATCCGGGCTTGACGAGGGGGGAAA
TCTTGCACCAGTACGGGGCGTATGCGGAGGAAGAGGACGTCAGGGAGGGA
GGGAGGTTGAGACGATTGTTGACTAAGCCAGTGCATCATCTCTTCGCGGG
GGAGCCGATGGGGAAGAGGTTTCGGGCGGCTTTGGACCAGGCTTTACTTG
ACCCGACATTAGGCGTGCGGCAAGTGCTCGAGACGGCGACTGCTGTGCTG
CCACCTGCACTGTTGGAGGTGAAGCCAGGCTCGCCATCCATACCGGCACC
GGAGACAGTTCGGCATTAGATGGGGCTGCTAAGAGGAACCTTTATTGAAG
TAAGGAGGGATGTAGAATATGAGGTAAGCGACCGCGATTTTTGAAAAAAG
AAAATATGACGATAAAGTCGAAGAAATGTACAACAGCGTTGAAGAAAGAG
AGAGGGGGTAAGCGCTTAAAAACTCATCGGCGTCATCAAGGGGGGGCCCT
CCATCATTTTGGTTCCCTCTCTGCCCTTGATGATGAGAGCTAACTCGCTT
GGGATTAGCGAGACTAACGGCTTTATATGTCAAAAGCGCCGATCTAGCCA
CGCGCTAAAAGCTGGATAGTTCAAGAAACAAAGAAGACTTTGTTAGTGAG
ACAGAGAAGGGAGGTGACGGAGAAAGTGGGAACCATCGGGAGAAGCAAAG
TACAAATGTAGGACGCGTTCGTGTGTTCCAAAAGCAGCTTCCTAAAGACG
CAAAGGAAGAAGTAAAAACTCCTATCGGTATTTCGAAAA
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protein sequence of NO12G01950.1

>NO12G01950.1-protein ID=NO12G01950.1-protein|Name=NO12G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MSRGRSPRRRRRRAPFLIIVIMLAAVTSGLAFVQQQARLPAKLRKLTIGK
RMIMIPKSMSIKSAHRMDEIRGATGGGHDEMTGPLLLDERISLAPMMEYT
DRHFRFFLRLLSKRMVLYTEMITAPTLYLNKDSRDRFLKFNAPAEHPVVL
QLGGSDPFLLSEASRIALPYNYDAINLNCGCPSERVSGRGCFGAALMREP
ERVADICTAMGEGSEGRIPITVKCRIGVDDEDSYEQLAEFVRRVSCASPV
RHFVVHARKAILGGLSPDQNRRVPPLKYPFVYRLCKEFPHLRFTLNGGVL
SYEDVETHLKEGVHGVMVGRAIIARPFYWSDIDARLYGAVGENPGLTRGE
ILHQYGAYAEEEDVREGGRLRRLLTKPVHHLFAGEPMGKRFRAALDQALL
DPTLGVRQVLETATAVLPPALLEVKPGSPSIPAPETVRH*
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Synonyms
Publications