NO12G01760, NO12G01760 (gene) Nannochloropsis oceanica

Overview
NameNO12G01760
Unique NameNO12G01760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length676
Alignment locationchr12:520125..520800 -

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquitin-like protein 5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:520125..520800 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Homology
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: PRW59597.1 (Ubiquitin 5 [Chlorella sorokiniana])

HSP 1 Score: 142.1 bits (357), Expect = 6.800e-31
Identity = 66/73 (90.41%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEV+LNDRLGKKIRVKCNEDDTIGDLKK+VAAQTGTRPEKIRIQKWYTVYKDHITL+DYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKIRVKCNEDDTIGDLKKMVAAQTGTRPEKIRIQKWYTVYKDHITLSDYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: XP_003578938.1 (ubiquitin-like protein 5 [Brachypodium distachyon] >XP_020156054.1 ubiquitin-like protein 5 [Aegilops tauschii subsp. tauschii] >AIZ94609.1 HUB1 [Lolium perenne] >AJA91631.1 ubiquitin-like protein 5 [Triticum aestivum] >KQJ92334.1 hypothetical protein BRADI_4g42980v3 [Brachypodium distachyon])

HSP 1 Score: 141.7 bits (356), Expect = 8.900e-31
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITL DYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLGDYEIHDGMGLELYYN 73
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BLAST of NO12G01760 vs. NCBI_GenBank
Match: XP_002529942.1 (PREDICTED: ubiquitin-like protein 5 [Ricinus communis] >EEF32450.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 141.7 bits (356), Expect = 8.900e-31
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEVILNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITL DYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLQDYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: OAY38020.1 (hypothetical protein MANES_11G146400 [Manihot esculenta])

HSP 1 Score: 141.7 bits (356), Expect = 8.900e-31
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEVILNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITL DYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLKDYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: XP_005646670.1 (ubiquitin-like protein [Coccomyxa subellipsoidea C-169] >EIE22126.1 ubiquitin-like protein [Coccomyxa subellipsoidea C-169] >BBB04234.1 ubiquitin-like protein 5 [Trebouxiophyceae sp. MBIC11204])

HSP 1 Score: 141.7 bits (356), Expect = 8.900e-31
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEVILNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWY +YKDHITLADYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLADYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: AEZ52393.1 (ubiquitin-like protein 5 [Wolffia australiana])

HSP 1 Score: 141.0 bits (354), Expect = 1.500e-30
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITL DYE+ +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLKDYEVHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: PTQ36301.1 (hypothetical protein MARPO_0065s0096 [Marchantia polymorpha])

HSP 1 Score: 140.6 bits (353), Expect = 2.000e-30
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIR+QKWY +YKDHITLADYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRLQKWYNIYKDHITLADYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: XP_022007083.1 (ubiquitin-like protein 5 [Helianthus annuus] >OTF99084.1 putative ubiquitin-related domain-containing protein [Helianthus annuus])

HSP 1 Score: 140.2 bits (352), Expect = 2.600e-30
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRP+KIRIQKWYT+YKDHITL DYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPDKIRIQKWYTIYKDHITLQDYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: XP_024454473.1 (ubiquitin-like protein 5 [Populus trichocarpa] >PKA52078.1 Ubiquitin-like protein 5 [Apostasia shenzhenica] >PNT42421.1 hypothetical protein POPTR_004G211600v3 [Populus trichocarpa])

HSP 1 Score: 140.2 bits (352), Expect = 2.600e-30
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRP+KIRIQKWYT+YKDHITL DYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPDKIRIQKWYTIYKDHITLKDYEIHDGMGLELYYN 73
[Close]
BLAST of NO12G01760 vs. NCBI_GenBank
Match: XP_002966475.1 (ubiquitin-like protein 5 [Selaginella moellendorffii] >XP_002982045.1 ubiquitin-like protein 5 [Selaginella moellendorffii] >EFJ16713.1 hypothetical protein SELMODRAFT_268541 [Selaginella moellendorffii] >EFJ32502.1 hypothetical protein SELMODRAFT_230773 [Selaginella moellendorffii])

HSP 1 Score: 139.8 bits (351), Expect = 3.400e-30
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 74
            MIEVILNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKD+ITL+DYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDNITLSDYEIRDGMGLELYYN 73
The following BLAST results are available for this feature:
BLAST of NO12G01760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PRW59597.16.800e-3190.41Ubiquitin 5 [Chlorella sorokiniana][more]
XP_003578938.18.900e-3189.04ubiquitin-like protein 5 [Brachypodium distachyon]... [more]
XP_002529942.18.900e-3190.41PREDICTED: ubiquitin-like protein 5 [Ricinus commu... [more]
OAY38020.18.900e-3190.41hypothetical protein MANES_11G146400 [Manihot escu... [more]
XP_005646670.18.900e-3190.41ubiquitin-like protein [Coccomyxa subellipsoidea C... [more]
AEZ52393.11.500e-3087.67ubiquitin-like protein 5 [Wolffia australiana][more]
PTQ36301.12.000e-3087.67hypothetical protein MARPO_0065s0096 [Marchantia p... [more]
XP_022007083.12.600e-3087.67ubiquitin-like protein 5 [Helianthus annuus] >OTF9... [more]
XP_024454473.12.600e-3087.67ubiquitin-like protein 5 [Populus trichocarpa] >PK... [more]
XP_002966475.13.400e-3089.04ubiquitin-like protein 5 [Selaginella moellendorff... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010100NSK010100Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01760.1NO12G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592173gene_5334Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100054g35gene4660Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01760.1NO12G01760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01760 ID=NO12G01760|Name=NO12G01760|organism=Nannochloropsis oceanica|type=gene|length=676bp
ATGATCGAGGTCATTCTCAATGACCGGCTGGGCAAGAAGATCCGGGTCAA
ATGCAACGAGGATGATACCATCGGAGACCTGAAAAAGCTGGTGGCGGCTC
AAACAGgtgggagcttggtctttgaccggtgtcgatcaagagatgctatt
cgcggagggagacgtgacgcggtcttgtgtgtataagagggctggtgcag
ttgccgagaacggaagggccggagaacggaagaagcatattttgattgtg
cccccgaactacgtctccgcgtggcatgcgcgtggcatgcatgattagat
agactccttgcgtttcatcacacgccttttgctgacctacagttaccccg
cacgcctctcaccactttttccagGCACACGACCAGAGAAGATTCGCATC
CAAAAGTGGTACACTGTCTACAAAGATCACATCACACTCGCTGATTACGA
GATTAGTGAGgtacgatgtctcgctgacggagaggtgtccgtccggttgg
ggaagagaatttaattgcaaagcaagttcacaagacaggaaataaaggtc
tggatcgactcaattgaccatcacgacatccataattttgtgttctccac
catcattacccctgctccctccccgtcctcccttttctcgacacagGGCA
TGTCACTGGAGCTGTACTACTCGTAA
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protein sequence of NO12G01760.1

>NO12G01760.1-protein ID=NO12G01760.1-protein|Name=NO12G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTV
YKDHITLADYEISEGMSLELYYS*
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Synonyms
Publications