NO12G01740, NO12G01740 (gene) Nannochloropsis oceanica

Overview
NameNO12G01740
Unique NameNO12G01740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr12:516395..517066 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:516395..517066 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008199ferric iron binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
GO:0016043cellular component organization
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR002908Frataxin/CyaY
Homology
BLAST of NO12G01740 vs. NCBI_GenBank
Match: XP_005856100.1 (hypothetical protein NGA_0332000 [Nannochloropsis gaditana CCMP526] >EKU20236.1 hypothetical protein NGA_0332000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 209.1 bits (531), Expect = 1.400e-50
Identity = 92/126 (73.02%), Postives = 110/126 (87.30%), Query Frame = 0
Query:   97 RFVRRKPGVAAPSQAAEIDFGKVTGALFDRVEAGVAGMQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCPQI 223
            RFVRRKPG  AP +  ++DFG+ TGALFDR+E GVAGMQELND F++NRQ++ ELV+DLGPGKGAFTLQRDWA NQLVY+SPVSGCNKY Y+    RWLS+A+D+HDL GI+TRDLIRMCVGCP++
Sbjct:   80 RFVRRKPGQVAP-ETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL 204          
BLAST of NO12G01740 vs. NCBI_GenBank
Match: EWM25875.1 (hypothetical protein Naga_100054g32 [Nannochloropsis gaditana])

HSP 1 Score: 194.9 bits (494), Expect = 2.700e-46
Identity = 85/119 (71.43%), Postives = 103/119 (86.55%), Query Frame = 0
Query:  104 GVAAPSQAAEIDFGKVTGALFDRVEAGVAGMQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCPQI 223
            G  AP +  ++DFG+ TGALFDR+E GVAGMQELND F++NRQ++ ELV+DLGPGKGAFTLQRDWA NQLVY+SPVSGCNKY Y+    RWLS+A+D+HDL GI+TRDLIRMCVGCP++
Sbjct:   49 GQVAP-ETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL 166          
BLAST of NO12G01740 vs. NCBI_GenBank
Match: CBJ30485.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.5 bits (197), Expect = 7.400e-12
Identity = 42/124 (33.87%), Postives = 71/124 (57.26%), Query Frame = 0
Query:  105 VAAPSQAAEIDFGKVTGALF--------DRVEAGVAGMQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221
            ++A +Q A  +FG+++            D+VE  +  M+  ND F + R++  E+  +LGP  G + ++ D +  Q+  MSP SG ++Y +D G GRW+  A D+HD  G++TRD+I+   G P
Sbjct:  112 MSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEV-RREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEA-DKHDFQGMLTRDIIQSACGIP 233          
BLAST of NO12G01740 vs. NCBI_GenBank
Match: GBG25447.1 (Hypothetical Protein FCC1311_016652 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 66.2 bits (160), Expect = 1.400e-7
Identity = 36/116 (31.03%), Postives = 55/116 (47.41%), Query Frame = 0
Query:  105 VAAPSQAAEIDFGKVTGALFDRVEAGVAGMQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221
            VA  S     DF        ++V  G + +Q  N    +N   + E+ + L      F +Q D+ +N+L+++SP SG   Y  D   GRW     D H   G++TRD++R C G P
Sbjct:   22 VADRSAVLGEDFRAGAKDALEKVRRGFSELQADNPSLQLNSPSDWEIEVHLANTDNRFLVQIDFDKNELIFVSPESGGRTYFLDAESGRWRD-RTDGHGFDGLLTRDVMRHCYGVP 136          
BLAST of NO12G01740 vs. NCBI_GenBank
Match: GAX95870.1 (Hypothetical protein PINS_003744 [Pythium insidiosum])

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-7
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 0
Query:  116 FGKVTGALFDRVEAGVAG-MQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221
            F  +T   FDRV+A VA  +   N  F ++R     L+L     +  F L+    + QL   SP+SG  KY ++    RW     D HDL G++TRDL+R+C G P
Sbjct:    6 FDSLTTEFFDRVDAAVAPLLPPANAVFEVDRSTPGMLLLRTATKE--FELKIINNKQQLHLQSPISGLRKYEWNAKTXRW-EDETDAHDLEGLLTRDLMRLCTGIP 108          
BLAST of NO12G01740 vs. NCBI_GenBank
Match: ETI52035.1 (hypothetical protein F443_04751, partial [Phytophthora parasitica P1569] >ETM51625.1 hypothetical protein L914_04587, partial [Phytophthora parasitica])

HSP 1 Score: 64.3 bits (155), Expect = 5.500e-7
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 0
Query:  116 FGKVTGALFDRVEAGVAGMQ-ELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221
            F  ++    DRV+A V  +   +ND F + R    ELV+     +  F ++   ++ Q+ ++SPVSG   Y ++    RW    D  HD+ G++TRDL+R C G P
Sbjct:   27 FTTLSTEFLDRVQAAVEPLHPPINDDFQLQRDGNGELVIRTNSKE--FVIKVLSSKQQIEFLSPVSGLRTYQWNLMTKRWEDETDS-HDIEGLLTRDLMRFCAGIP 129          
BLAST of NO12G01740 vs. NCBI_GenBank
Match: XP_008902115.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETK91880.1 hypothetical protein, variant [Phytophthora parasitica] >ETL98461.1 hypothetical protein, variant [Phytophthora parasitica] >ETN12099.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO80766.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP49685.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 64.3 bits (155), Expect = 5.500e-7
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 0
Query:  116 FGKVTGALFDRVEAGVAGMQ-ELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221
            F  ++    DRV+A V  +   +ND F + R    ELV+     +  F ++   ++ Q+ ++SPVSG   Y ++    RW    D  HD+ G++TRDL+R C G P
Sbjct:   48 FTTLSTEFLDRVQAAVEPLHPPINDDFQLQRDGNGELVIRTNSKE--FVIKVLSSKQQIEFLSPVSGLRTYQWNLMTKRWEDETDS-HDIEGLLTRDLMRFCAGIP 150          
BLAST of NO12G01740 vs. NCBI_GenBank
Match: KUF64492.1 (hypothetical protein AM587_10017222 [Phytophthora nicotianae])

HSP 1 Score: 64.3 bits (155), Expect = 5.500e-7
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 0
Query:  116 FGKVTGALFDRVEAGVAGMQ-ELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCP 221
            F  ++    DRV+A V  +   +ND F + R    ELV+     +  F ++   ++ Q+ ++SPVSG   Y ++    RW    D  HD+ G++TRDL+R C G P
Sbjct:  315 FTTLSTEFLDRVQAAVEPLHPPINDDFQLQRDGNGELVIRTNSKE--FVIKVLSSKQQIEFLSPVSGLRTYQWNLMTKRWEDETDS-HDIEGLLTRDLMRFCAGIP 417          
The following BLAST results are available for this feature:
BLAST of NO12G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
XP_005856100.11.400e-5073.02hypothetical protein NGA_0332000 [Nannochloropsis ... [more]
EWM25875.12.700e-4671.43hypothetical protein Naga_100054g32 [Nannochlorops... [more]
CBJ30485.17.400e-1233.87conserved unknown protein [Ectocarpus siliculosus][more]
GBG25447.11.400e-731.03Hypothetical Protein FCC1311_016652 [Aurantiochytr... [more]
GAX95870.11.900e-736.79Hypothetical protein PINS_003744 [Pythium insidios... [more]
ETI52035.15.500e-733.02hypothetical protein F443_04751, partial [Phytopht... [more]
XP_008902115.15.500e-733.02hypothetical protein, variant [Phytophthora parasi... [more]
KUF64492.15.500e-733.02hypothetical protein AM587_10017222 [Phytophthora ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010096NSK010096Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01740.1NO12G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01740.1NO12G01740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01740 ID=NO12G01740|Name=NO12G01740|organism=Nannochloropsis oceanica|type=gene|length=672bp
ATGCCGTATCATACGTGGATTTATACGGCTGTCAAGCTGGCAACCAGCGG
CGGCAATAGCCGTCGTGCCACCAGCATTCTCGTCTTTCGCACTTGTCGAC
GCCGGCCTCTCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCC
TCGTCTCAAGGCTCGCAGCAGCACGTGTGGGGGGACATCCTGCCTAAGGG
TGGAATAAGCAGCAGCGGCACAAACAGCTCCACAAACGCGTCAGGCCGCA
GCACTAGAAGCAGCAGCAGCGGCAGTGGCGGTGCCCCTCGCTTTGTCCGC
CGCAAGCCCGGCGTGGCCGCCCCGAGCCAAGCAGCCGAAATTGACTTTGG
CAAGGTAACGGGCGCGTTATTTGATCGTGTGGAAGCGGGTGTGGCGGGGA
TGCAGGAACTCAATGACCCCTTCATTATTAACAGACAAGATGAGGCAGAG
TTGGTGTTGGACTTGGGACCGGGTAAAGGGGCATTTACCTTGCAGAGAGA
CTGGGCACAAAACCAGCTGGTGTATATGTCACCGGTTTCCGGTTGTAATA
AGTATGCATATGATGGGGGGGAGGGGAGGTGGTTGAGCGTCGCGGACGAC
AGACACGATTTGGTGGGGATAATGACGAGGGACTTGATTCGGATGTGTGT
GGGTTGTCCTCAGATAACATAA
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protein sequence of NO12G01740.1

>NO12G01740.1-protein ID=NO12G01740.1-protein|Name=NO12G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MPYHTWIYTAVKLATSGGNSRRATSILVFRTCRRRPLSSSSPSSSSSSSS
SSQGSQQHVWGDILPKGGISSSGTNSSTNASGRSTRSSSSGSGGAPRFVR
RKPGVAAPSQAAEIDFGKVTGALFDRVEAGVAGMQELNDPFIINRQDEAE
LVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADD
RHDLVGIMTRDLIRMCVGCPQIT*
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Synonyms
Publications