NO12G01740.1, NO12G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01740.1
Unique NameNO12G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr12:516395..517066 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:516395..517066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01740.1 vs.
Match: XP_005856100.1 (hypothetical protein NGA_0332000 [Nannochloropsis gaditana CCMP526]; EKU20236.1 hypothetical protein NGA_0332000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 216.5 bits (550), Expect = 8.600e-53
Identity = 114/194 (58.76%), Postives = 140/194 (72.16%), Query Frame = 0 
Query:   29 FRTCRRRPLSSSSPSSSSSSSSSSQGSQQHVWGDILPKGGISSSGTNSSTNASGRSTRSSSSGSGGAPRFVRRKPGVAAPSQAAEIDFGKVTGALFDRVEAGVAGMQELNDPFIINRQDEAELVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADDRHDLVGIMTRDLIRMCVGCPQI 223
            F T RR    S S S  + SSSS+   +Q  WG I  KGG +++G+               S +GG  RFVRRKPG  AP +  ++DFG+ TGALFDR+E GVAGMQELND F++NRQ++ ELV+DLGPGKGAFTLQRDWA NQLVY+SPVSGCNKY Y+    RWLS+A+D+HDL GI+TRDLIRMCVGCP++
Sbjct:   27 FLTTRR----SVSRSIKAFSSSSTSAGEQLRWGAIKSKGGTNNAGSGPF-----------GSSAGGDSRFVRRKPGQVAP-ETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL 204
The following BLAST results are available for this feature:
BLAST of NO12G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856100.18.600e-5358.76hypothetical protein NGA_0332000 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01740NO12G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01740.1NO12G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01740.1.cds1NO12G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01740.1 ID=NO12G01740.1|Name=NO12G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
ATGCCGTATCATACGTGGATTTATACGGCTGTCAAGCTGGCAACCAGCGG
CGGCAATAGCCGTCGTGCCACCAGCATTCTCGTCTTTCGCACTTGTCGAC
GCCGGCCTCTCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCC
TCGTCTCAAGGCTCGCAGCAGCACGTGTGGGGGGACATCCTGCCTAAGGG
TGGAATAAGCAGCAGCGGCACAAACAGCTCCACAAACGCGTCAGGCCGCA
GCACTAGAAGCAGCAGCAGCGGCAGTGGCGGTGCCCCTCGCTTTGTCCGC
CGCAAGCCCGGCGTGGCCGCCCCGAGCCAAGCAGCCGAAATTGACTTTGG
CAAGGTAACGGGCGCGTTATTTGATCGTGTGGAAGCGGGTGTGGCGGGGA
TGCAGGAACTCAATGACCCCTTCATTATTAACAGACAAGATGAGGCAGAG
TTGGTGTTGGACTTGGGACCGGGTAAAGGGGCATTTACCTTGCAGAGAGA
CTGGGCACAAAACCAGCTGGTGTATATGTCACCGGTTTCCGGTTGTAATA
AGTATGCATATGATGGGGGGGAGGGGAGGTGGTTGAGCGTCGCGGACGAC
AGACACGATTTGGTGGGGATAATGACGAGGGACTTGATTCGGATGTGTGT
GGGTTGTCCTCAGATAACATAA
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protein sequence of NO12G01740.1

>NO12G01740.1-protein ID=NO12G01740.1-protein|Name=NO12G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MPYHTWIYTAVKLATSGGNSRRATSILVFRTCRRRPLSSSSPSSSSSSSS
SSQGSQQHVWGDILPKGGISSSGTNSSTNASGRSTRSSSSGSGGAPRFVR
RKPGVAAPSQAAEIDFGKVTGALFDRVEAGVAGMQELNDPFIINRQDEAE
LVLDLGPGKGAFTLQRDWAQNQLVYMSPVSGCNKYAYDGGEGRWLSVADD
RHDLVGIMTRDLIRMCVGCPQIT*
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mRNA from alignment at chr12:516395..517066+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01740.1 ID=NO12G01740.1|Name=NO12G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp|location=Sequence derived from alignment at chr12:516395..517066+ (Nannochloropsis oceanica)
ATGCCGTATCATACGTGGATTTATACGGCTGTCAAGCTGGCAACCAGCGG
CGGCAATAGCCGTCGTGCCACCAGCATTCTCGTCTTTCGCACTTGTCGAC
GCCGGCCTCTCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCC
TCGTCTCAAGGCTCGCAGCAGCACGTGTGGGGGGACATCCTGCCTAAGGG
TGGAATAAGCAGCAGCGGCACAAACAGCTCCACAAACGCGTCAGGCCGCA
GCACTAGAAGCAGCAGCAGCGGCAGTGGCGGTGCCCCTCGCTTTGTCCGC
CGCAAGCCCGGCGTGGCCGCCCCGAGCCAAGCAGCCGAAATTGACTTTGG
CAAGGTAACGGGCGCGTTATTTGATCGTGTGGAAGCGGGTGTGGCGGGGA
TGCAGGAACTCAATGACCCCTTCATTATTAACAGACAAGATGAGGCAGAG
TTGGTGTTGGACTTGGGACCGGGTAAAGGGGCATTTACCTTGCAGAGAGA
CTGGGCACAAAACCAGCTGGTGTATATGTCACCGGTTTCCGGTTGTAATA
AGTATGCATATGATGGGGGGGAGGGGAGGTGGTTGAGCGTCGCGGACGAC
AGACACGATTTGGTGGGGATAATGACGAGGGACTTGATTCGGATGTGTGT
GGGTTGTCCTCAGATAACATAA
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Coding sequence (CDS) from alignment at chr12:516395..517066+

>NO12G01740.1 ID=NO12G01740.1|Name=NO12G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr12:516395..517066+ (Nannochloropsis oceanica)
ATGCCGTATCATACGTGGATTTATACGGCTGTCAAGCTGGCAACCAGCGG
CGGCAATAGCCGTCGTGCCACCAGCATTCTCGTCTTTCGCACTTGTCGAC
GCCGGCCTCTCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCC
TCGTCTCAAGGCTCGCAGCAGCACGTGTGGGGGGACATCCTGCCTAAGGG
TGGAATAAGCAGCAGCGGCACAAACAGCTCCACAAACGCGTCAGGCCGCA
GCACTAGAAGCAGCAGCAGCGGCAGTGGCGGTGCCCCTCGCTTTGTCCGC
CGCAAGCCCGGCGTGGCCGCCCCGAGCCAAGCAGCCGAAATTGACTTTGG
CAAGGTAACGGGCGCGTTATTTGATCGTGTGGAAGCGGGTGTGGCGGGGA
TGCAGGAACTCAATGACCCCTTCATTATTAACAGACAAGATGAGGCAGAG
TTGGTGTTGGACTTGGGACCGGGTAAAGGGGCATTTACCTTGCAGAGAGA
CTGGGCACAAAACCAGCTGGTGTATATGTCACCGGTTTCCGGTTGTAATA
AGTATGCATATGATGGGGGGGAGGGGAGGTGGTTGAGCGTCGCGGACGAC
AGACACGATTTGGTGGGGATAATGACGAGGGACTTGATTCGGATGTGTGT
GGGTTGTCCTCAGATAACATAA
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Synonyms
Publications