NO12G01640, NO12G01640 (gene) Nannochloropsis oceanica

Overview
NameNO12G01640
Unique NameNO12G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1770
Alignment locationchr12:493713..495482 -

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Properties
Property NameValue
DescriptionAnkyrin repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:493713..495482 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
BLAST of NO12G01640 vs. NCBI_GenBank
Match: GAX15622.1 (hypothetical protein FisN_3Hu093 [Fistulifera solaris])

HSP 1 Score: 150.2 bits (378), Expect = 2.000e-32
Identity = 70/169 (41.42%), Postives = 103/169 (60.95%), Query Frame = 0
Query:  296 ISPQEFLWGILQERGYETSPLFSKTQAFFR-PPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWREWKEFFDSKKEKY 464
            +SPQ +L  +LQ RG  TS  F   +  +R  PTP Q   Y   L+  V+ GD+  L+ M Q G   + C+  GES++H+ CRRG+++ L+  L +G  + + D LGRTPLH+ACW+K P F  I  IL AD  L  M D +GA PL+Y+R+ +WR+W  F ++K+  +
Sbjct:  133 VSPQMYLESLLQSRGL-TSERFKTLETGYRNMPTPLQASSYGPVLVEHVRNGDIEALEKMLQAGISPNPCSATGESLIHLICRRGESKMLKLFLNYGASIQVSDSLGRTPLHEACWSK-PCFKTIELILKADANLFNMADGQGAVPLSYVRKGYWRQWVHFLEAKQNVF 299          
BLAST of NO12G01640 vs. NCBI_GenBank
Match: GAX15611.1 (hypothetical protein FisN_3Hh082 [Fistulifera solaris])

HSP 1 Score: 148.3 bits (373), Expect = 7.600e-32
Identity = 65/168 (38.69%), Postives = 99/168 (58.93%), Query Frame = 0
Query:  297 SPQEFLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWREWKEFFDSKKEKYW 465
            SPQ +L  +L  RGY T+   S +  +F  PTP Q+  YD+ L+N V+   L +++ M + G   + C+K GES++H+  RRG  E L     +G +  + D LGRT LHD  WA +P FD +  +L  D +++ M D R   PLA  R+ HW++W +FF+ KK+ +W
Sbjct:   95 SPQTYLDRLLSSRGYSTNRHDSSSCGYFNKPTPFQIASYDVNLVNLVRNRRLTEIEAMLKAGISANPCSKQGESLIHMIARRGDTELLNLFKKYGCRFEVADTLGRTLLHDVFWASQPAFDTVELLLREDIDMLFMNDSRQNPPLACARKEHWKQWIDFFEEKKDIFW 262          
BLAST of NO12G01640 vs. NCBI_GenBank
Match: XP_002181991.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46531.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 146.7 bits (369), Expect = 2.200e-31
Identity = 70/187 (37.43%), Postives = 103/187 (55.08%), Query Frame = 0
Query:  296 ISPQEFLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWREWKEFFDSKKEKYWAPLPGSSCETELIVRGAP 483
            ++P E L  +L+ RGY T        AFF  PTP Q+  YD  L+  +K+ D  +++++   G   +ACN +GES++H +CR G    +R     G  + + D  GRT LHD CW   P F   S I+D  PEL+ + DCRGA PL Y+R+ H+  W E+ D   +KYW P   S+ +   +V+  P
Sbjct:   89 VTPHEHLEVLLKARGYCTERYSVLQTAFFNRPTPLQLASYDTKLIQLIKSQDEQKVREILASGISPNACNIHGESLIHKACRLGYHRLVRAFTDFGADLAISDAQGRTLLHDTCWGARPSFQTFSLIVDRQPELLFLADCRGACPLEYVRKDHYVFWIEYLDQIADKYW-PSTQSTPKLSYLVKQEP 274          
BLAST of NO12G01640 vs. NCBI_GenBank
Match: GAX24750.1 (hypothetical protein FisN_4Hu308 [Fistulifera solaris])

HSP 1 Score: 145.6 bits (366), Expect = 4.900e-31
Identity = 63/177 (35.59%), Postives = 97/177 (54.80%), Query Frame = 0
Query:  289 QTPSNHD-ISPQEFLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWREWKEFFDSKKEKYW 465
            +T SN + ++PQ ++  +L+ RGY T    +    ++  P+  Q   Y+I L+  ++  D+   Q++ + G   + CN+Y ES+ H  CR G    +  LL  G      DD GRTPLHDACWA EP F  +  IL  D  +  M+D RG  PL Y+R+ H+ +W  F +  ++KYW
Sbjct:   83 KTDSNDNLLNPQAYMDAMLRYRGYSTKRYPTLQSGYYNTPSSHQRASYNIHLIGLIRRHDVENFQELMRAGLSSNPCNQYNESVAHTVCRHGSKPMMDVLLERGCDFRTADDYGRTPLHDACWAAEPAFPVVEEILKFDVRMFHMIDARGHCPLNYVRKEHYGDWIAFLEKNQDKYW 259          
BLAST of NO12G01640 vs. NCBI_GenBank
Match: GAX24751.1 (hypothetical protein FisN_4Hu309 [Fistulifera solaris])

HSP 1 Score: 145.6 bits (366), Expect = 4.900e-31
Identity = 60/169 (35.50%), Postives = 92/169 (54.44%), Query Frame = 0
Query:  296 ISPQEFLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWREWKEFFDSKKEKYW 465
            ++PQ ++  +L+ RGY T    +    ++  P+P Q   Y+I L+  ++  D+   Q++ + G   + CN+Y ES+ H  CR G    +  LL  G      DD GRTPLHDACWA EP F  +  IL  D  +  M+D RG  PL Y+R+ H+ +W  F +   ++YW
Sbjct:   91 MNPQAYMDAMLRYRGYSTKRYHTLQSGYYNKPSPHQRASYNIHLIGLIRRRDVENFQELMRAGLSSNPCNQYSESVAHTVCRHGSKPMMDVLLERGCDFRTADDYGRTPLHDACWAAEPAFGVVEEILKFDIRMFHMIDARGHCPLNYVRKEHYGDWIAFIEQNADRYW 259          
BLAST of NO12G01640 vs. NCBI_GenBank
Match: GAX19140.1 (hypothetical protein FisN_3Lh082 [Fistulifera solaris])

HSP 1 Score: 144.1 bits (362), Expect = 1.400e-30
Identity = 66/168 (39.29%), Postives = 98/168 (58.33%), Query Frame = 0
Query:  297 SPQEFLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWREWKEFFDSKKEKYW 465
            SPQ +L  +L  RGY T+   S +  +F  PT  Q+  +D+ L+N V+   L +++ M + G   + C+K GES++H+  RRG  E L     +G +  + D LGR  LHDA WA +P FD +  +L  D ++I M D R   PLA  R+ HW+EW EFF+ KK+ +W
Sbjct:   95 SPQTYLDRLLTSRGYSTNRHDSSSCGYFNKPTAFQIASFDVNLVNLVRNRRLNEIEAMLKAGISANPCSKEGESLIHMIARRGDTEMLNLFKKYGCRFEVADMLGRNLLHDAFWASQPAFDTVELLLREDIDMIFMNDSRQNPPLACARKEHWKEWIEFFEKKKDIFW 262          
BLAST of NO12G01640 vs. NCBI_GenBank
Match: GAX22247.1 (hypothetical protein FisN_19Lh317 [Fistulifera solaris])

HSP 1 Score: 142.9 bits (359), Expect = 3.200e-30
Identity = 63/174 (36.21%), Postives = 96/174 (55.17%), Query Frame = 0
Query:  291 PSNHDISPQEFLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWREWKEFFDSKKEKYW 465
            P +++ +PQ +L  +L+ERGYE          ++  PT  Q+  Y   L++ VK   +  + D+   G   + CN++G S++ I+CRRG  E L  +L HG  + + D+ GRTPLH+A +AK+P F  +  IL  DP LI M D RG     Y+R+ H  EW  F D   ++ W
Sbjct:   97 PESNETTPQRYLDELLKERGYEKERYDCLKTGYYNAPTKLQIASYHAHLVSLVKQNSIETIADILACGLSPNPCNEFGSSLLQIACRRGNVELLEIMLRHGCSLQVADEFGRTPLHNALYAKQPAFALVKRILQVDPHLINMADSRGHLAFDYVRKEHCDEWIAFLDKVVDEIW 270          
BLAST of NO12G01640 vs. NCBI_GenBank
Match: XP_002183704.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44886.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 142.5 bits (358), Expect = 4.200e-30
Identity = 66/165 (40.00%), Postives = 95/165 (57.58%), Query Frame = 0
Query:  297 SPQEFLWGILQERGYETSP-LFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWREWKEFFDSKK 461
            +P E L  IL + G    P  +   ++FF    P+ +  Y++ L++AV+  +L  L  +    +    CN++GESIVH++ RRG  E LRFL+A G  V +C D GR PLHD CW+  P F+CI  ILD  P+L+ + D RG +PL Y  R  W EW +F D  +
Sbjct:  151 NPNEKLQEILCQEGVSALPRKYDSLESFFVKVLPEMIHAYEMKLVHAVRDNNLDALFLLLDTVKSFQCCNRFGESIVHLASRRGSTEALRFLVAQGVDVRVCCDSGRNPLHDGCWSSRPNFECIQVILDEFPDLLLIQDRRGFTPLQYAPRDSWGEWNQFLDGNR 315          
BLAST of NO12G01640 vs. NCBI_GenBank
Match: CBN77924.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 130.6 bits (327), Expect = 1.600e-26
Identity = 57/128 (44.53%), Postives = 84/128 (65.62%), Query Frame = 0
Query:  309 RGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCR 437
            +GY+++P  S +      PT KQ++DY + L+ AV+  D+  L+ +A  G  M A N++GESIVH++ RRG    LRFLL+HGG + +CDD G+TPLHDA W  EP F+ ++ +L+ D  L+R  D R
Sbjct:    5 KGYDSTPRSSASDGCRCTPTQKQLDDYQVPLVEAVRRWDMGALEALAADGVDMGASNRFGESIVHLATRRGSTPVLRFLLSHGGSLRICDDYGKTPLHDAFWTAEPRFELVAMMLEMDWGLLRATDAR 132          
BLAST of NO12G01640 vs. NCBI_GenBank
Match: GAX12083.1 (hypothetical protein FisN_8Lh188 [Fistulifera solaris])

HSP 1 Score: 129.4 bits (324), Expect = 3.600e-26
Identity = 65/172 (37.79%), Postives = 97/172 (56.40%), Query Frame = 0
Query:  287 RAQTPSNHDISPQEFLWGILQERG--YETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGG-KVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWREWKEF 456
            R+  P+N    P   L  ++++ G  YET    +  + FF   T   V+ Y++ ++ A++  DL  L+D    GRQ+   NK+G+SI+H +CRRG  E ++FLL   G    +C D GRT LHDACW   P F  I  +LDA P+L+   D RG +PL Y R A + +W ++
Sbjct:  153 RSSAPTNTAPKPDSVLKAMIEQAGYVYETFEALN-MKGFFVEVTEDVVKAYEMDVIKALRENDLQTLRDFYNAGRQLQCANKFGDSIIHTACRRGCLEIVQFLLKEAGLSCKVCCDYGRTSLHDACWTSSPNFQVIDELLDACPDLLYTKDKRGFTPLDYARPAQYGDWCKY 323          
The following BLAST results are available for this feature:
BLAST of NO12G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX15622.12.000e-3241.42hypothetical protein FisN_3Hu093 [Fistulifera sola... [more]
GAX15611.17.600e-3238.69hypothetical protein FisN_3Hh082 [Fistulifera sola... [more]
XP_002181991.12.200e-3137.43predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX24750.14.900e-3135.59hypothetical protein FisN_4Hu308 [Fistulifera sola... [more]
GAX24751.14.900e-3135.50hypothetical protein FisN_4Hu309 [Fistulifera sola... [more]
GAX19140.11.400e-3039.29hypothetical protein FisN_3Lh082 [Fistulifera sola... [more]
GAX22247.13.200e-3036.21hypothetical protein FisN_19Lh317 [Fistulifera sol... [more]
XP_002183704.14.200e-3040.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBN77924.11.600e-2644.53conserved unknown protein [Ectocarpus siliculosus][more]
GAX12083.13.600e-2637.79hypothetical protein FisN_8Lh188 [Fistulifera sola... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010083NSK010083Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01640.1NO12G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|63610gene_5320Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100054g23gene4648Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01640.1NO12G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01640 ID=NO12G01640|Name=NO12G01640|organism=Nannochloropsis oceanica|type=gene|length=1770bp
ATGCCCTTCCGAGGTAGTCTCATCATCTATAGCCAGCTCATTTGCTCAAA
TGCACCTTTCCACCTCTCCCTCCCCTCTTCCCACAGTGCCCGTCGTCCGA
CGCAAGCTACAGCGGTGCAAGGGCTTGAACAGGAGTCAGGGTTTCTCAAC
GCCTCTTCTTCCGTTCGCCTCTTTCGCCCAAAACTTGCTGACGCCGTCCC
CCCTCCGCTTCTGTGGTGCTTCATGGTGACGATGTGCGAAATGGTGACCA
CTGAAGTATCTGCCGAGACCGAAGATCGTGACGATGCTGTCCTCGTTGCA
GCAGCAGCAGCCCCAGCATCTAAAGCAGGCGCCACGGAATGCGGAAAGTC
TGGCACATGTGTAAGCATAAGTAGCAGCACGAGCGACAGCAGCAATGAGT
CACGCCTCGGGCATAGCGTCAGCACTGACAGCTTTCTCAAACACAACGAA
GCGAACGTTCCCTCTCTTCTCCACCGCGGCAGCGCTGGATGCGCGAGCAG
TTTCAGCAGCAACACTTCCGAGCAGGTCACCGAGACCAAGCCCTTCCCCA
CAACCCACCACCTGACTGCGCCCTTCACGGGCGTGGCCGCCGTGGCTCCC
TTCGTAGCTATCGGCGACAACCAAGGCCCCGTGCGGCACATGATAGATTG
GGAGCGATCAAGCAAGCAAATCACTACCTGGGGCACCAACCCAGTCCTCC
AACAATACCAACAACACAGCCTGAGCGGCAGCAAAGGTTCAGACCATGCA
GGAGTGGCCGCCATTGCCTGCAGCCCCGCCCCCAGCGCACACTTCAAAAG
ACCACGACCCACCACTACCAAAAGCACCACCACTACCAGCAGCAGCAATG
ATACGGGAAGGGCACAAACCCCTTCGAATCACGACATATCCCCCCAAGAA
TTCCTCTGGGGCATACTGCAAGAGCGGGGGTATGAGACTTCGCCTTTGTT
TTCCAAGACGCAAGCTTTCTTCCGCCCGCCCACCCCGAAGCAAGTAGAAG
ATTATGACATTGCTCTTTTGAACGCCGTAAAAACGGGGGATTTGGCACAA
TTGCAGGACATGGCTCAACAGGGCCGACAGATGGATGCGTGTAATAAATA
CGGAGAGAGCATCGTCCACATCTCGTGCCGAAGGGGCCAGGCGGAAACGT
TAAGGTTCTTGTTGGCTCACGGGGGGAAGGTGCACATGTGTGATGATTTG
GGAAGGACGCCATTGCATGACGCGTGTTGGGCGAAGGAGCCGGTGTTCGA
CTGTATATCAACAATCTTAGACGCGGACCCCGAGTTAATTCGTATGGTGG
ATTGTCGCGGAGCAAGTCCTTTGGCCTACATTCGGAGAGCGCATTGGAGG
GAATGGAAGGAGTTTTTCGACAGCAAGAAAGAGAAGTACTGGGCGCCGTT
GCCGGGGTCTTCGTGTGAGACGGAGTTGATAGTGAGGGGGGCACCGAAGA
TCGAGGATGGGGAGGAGGAGACGGGGCATGGCGTGAGACCGACGGGTACG
AATGGAAGAAGAGGGGACAGTCCCACCGCGCTGCACTCGGCATCGGCTGC
TAAACCTGTGACTGCATCGATGGCGGGGTCTTCATCGGAGGAGGAGGGGG
AGGAGGGAGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGGAGGGGAG
GAGCAGGGGGAGGAGCAGCAGCAGCCTAAGAGGGTGAGTGCGAGGCAACT
GCAGAGGAAGCGGTCGCGCAGTCTTGAGAAAAGCCAGGTCGATGCTGGGG
TGTCTGTAACTTCCTTTTAG
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protein sequence of NO12G01640.1

>NO12G01640.1-protein ID=NO12G01640.1-protein|Name=NO12G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MPFRGSLIIYSQLICSNAPFHLSLPSSHSARRPTQATAVQGLEQESGFLN
ASSSVRLFRPKLADAVPPPLLWCFMVTMCEMVTTEVSAETEDRDDAVLVA
AAAAPASKAGATECGKSGTCVSISSSTSDSSNESRLGHSVSTDSFLKHNE
ANVPSLLHRGSAGCASSFSSNTSEQVTETKPFPTTHHLTAPFTGVAAVAP
FVAIGDNQGPVRHMIDWERSSKQITTWGTNPVLQQYQQHSLSGSKGSDHA
GVAAIACSPAPSAHFKRPRPTTTKSTTTTSSSNDTGRAQTPSNHDISPQE
FLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQ
LQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDL
GRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWR
EWKEFFDSKKEKYWAPLPGSSCETELIVRGAPKIEDGEEETGHGVRPTGT
NGRRGDSPTALHSASAAKPVTASMAGSSSEEEGEEGGEEEGEEEGEEGGE
EQGEEQQQPKRVSARQLQRKRSRSLEKSQVDAGVSVTSF*
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Synonyms
Publications