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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:493713..495482 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01640.1 vs.
Match: XP_005856127.1 (hypothetical protein NGA_0334800 [Nannochloropsis gaditana CCMP526]; EKU20263.1 hypothetical protein NGA_0334800 [Nannochloropsis gaditana CCMP526]; EWM25880.1 Ankyrin repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 375.9 bits (964), Expect = 2.200e-100 Identity = 219/445 (49.21%), Postives = 272/445 (61.12%), Query Frame = 0
Query: 134 SRLGHSVSTDSFLKHNEANVPSLLHRGSAGCASSFSSNTSEQVTETKPFPTTHHLTAPFTGVAAVAPFVAIGDNQGPVRHMIDWERSSKQITTWGTNPVLQQYQQHSLSGSKGSDHAGVAAIACSPAPSAHFKRPRPTTTKSTTTTSSSNDTGRAQTPSNHDISPQEFLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWREWKEFFDSKKEKYWAPLPGSSCETELIVRGAPKIEDGEEETGHGVR--PTGTNGRRGDSPTALHSASAAKPVTASMAGSSSEEEGEEGGEEEGEEEGEEGGEEQGEEQQQPKRVSARQLQRKRSRSLE 577
+R+ HS STDSF ++A S L C ++ +++ P T TG + +G + M +WE++SK TTWG + VLQ++QQ + S D GV ++CSP A KRPR T+ + + N+ + SPQ+FLWGILQERGYETSPL +KTQAFFRPPT KQV DYDI L+ AV+TGDL L+DMA GRQMDACN++GESIVHISCRRGQAETLRFLL +GG+VHMCDDLGRTPLHDACWAK PVFDC+S I+D DP LIR+VDCRGA+PL+YIRR HW EW+EFFDSKKEKYWAPLPG + D E GV P G ++ LHS+SAA+PVTA+ G S++ EGEE Q R S RQ QRKRS++++
Sbjct: 46 NRISHSASTDSFFGADKA---STLSSEPEHCRELLNNASNDDAVTVSPSHTASADRGSGTGDV---------EEKGRLLAMEEWEQASKNTTTWGVDMVLQRHQQQ-IFDSDSMDTLGVIPLSCSPPSGAGCKRPRKKMTRPASEPALLNN----------EASPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLPGCASHAR------SGRSDSESTISGGVEREPRGQK----ENVETLHSSSAARPVTAT--GGSTDREGEE---------------------VQQTRTSERQRQRKRSKNVK 434
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01640.1 ID=NO12G01640.1|Name=NO12G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp ATGCCCTTCCGAGGTAGTCTCATCATCTATAGCCAGCTCATTTGCTCAAA TGCACCTTTCCACCTCTCCCTCCCCTCTTCCCACAGTGCCCGTCGTCCGA CGCAAGCTACAGCGGTGCAAGGGCTTGAACAGGAGTCAGGGTTTCTCAAC GCCTCTTCTTCCGTTCGCCTCTTTCGCCCAAAACTTGCTGACGCCGTCCC CCCTCCGCTTCTGTGGTGCTTCATGGTGACGATGTGCGAAATGGTGACCA CTGAAGTATCTGCCGAGACCGAAGATCGTGACGATGCTGTCCTCGTTGCA GCAGCAGCAGCCCCAGCATCTAAAGCAGGCGCCACGGAATGCGGAAAGTC TGGCACATGTGTAAGCATAAGTAGCAGCACGAGCGACAGCAGCAATGAGT CACGCCTCGGGCATAGCGTCAGCACTGACAGCTTTCTCAAACACAACGAA GCGAACGTTCCCTCTCTTCTCCACCGCGGCAGCGCTGGATGCGCGAGCAG TTTCAGCAGCAACACTTCCGAGCAGGTCACCGAGACCAAGCCCTTCCCCA CAACCCACCACCTGACTGCGCCCTTCACGGGCGTGGCCGCCGTGGCTCCC TTCGTAGCTATCGGCGACAACCAAGGCCCCGTGCGGCACATGATAGATTG GGAGCGATCAAGCAAGCAAATCACTACCTGGGGCACCAACCCAGTCCTCC AACAATACCAACAACACAGCCTGAGCGGCAGCAAAGGTTCAGACCATGCA GGAGTGGCCGCCATTGCCTGCAGCCCCGCCCCCAGCGCACACTTCAAAAG ACCACGACCCACCACTACCAAAAGCACCACCACTACCAGCAGCAGCAATG ATACGGGAAGGGCACAAACCCCTTCGAATCACGACATATCCCCCCAAGAA TTCCTCTGGGGCATACTGCAAGAGCGGGGGTATGAGACTTCGCCTTTGTT TTCCAAGACGCAAGCTTTCTTCCGCCCGCCCACCCCGAAGCAAGTAGAAG ATTATGACATTGCTCTTTTGAACGCCGTAAAAACGGGGGATTTGGCACAA TTGCAGGACATGGCTCAACAGGGCCGACAGATGGATGCGTGTAATAAATA CGGAGAGAGCATCGTCCACATCTCGTGCCGAAGGGGCCAGGCGGAAACGT TAAGGTTCTTGTTGGCTCACGGGGGGAAGGTGCACATGTGTGATGATTTG GGAAGGACGCCATTGCATGACGCGTGTTGGGCGAAGGAGCCGGTGTTCGA CTGTATATCAACAATCTTAGACGCGGACCCCGAGTTAATTCGTATGGTGG ATTGTCGCGGAGCAAGTCCTTTGGCCTACATTCGGAGAGCGCATTGGAGG GAATGGAAGGAGTTTTTCGACAGCAAGAAAGAGAAGTACTGGGCGCCGTT GCCGGGGTCTTCGTGTGAGACGGAGTTGATAGTGAGGGGGGCACCGAAGA TCGAGGATGGGGAGGAGGAGACGGGGCATGGCGTGAGACCGACGGGTACG AATGGAAGAAGAGGGGACAGTCCCACCGCGCTGCACTCGGCATCGGCTGC TAAACCTGTGACTGCATCGATGGCGGGGTCTTCATCGGAGGAGGAGGGGG AGGAGGGAGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGGAGGGGAG GAGCAGGGGGAGGAGCAGCAGCAGCCTAAGAGGGTGAGTGCGAGGCAACT GCAGAGGAAGCGGTCGCGCAGTCTTGAGAAAAGCCAGGTCGATGCTGGGG TGTCTGTAACTTCCTTTTAG back to topprotein sequence of NO12G01640.1 >NO12G01640.1-protein ID=NO12G01640.1-protein|Name=NO12G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp MPFRGSLIIYSQLICSNAPFHLSLPSSHSARRPTQATAVQGLEQESGFLN ASSSVRLFRPKLADAVPPPLLWCFMVTMCEMVTTEVSAETEDRDDAVLVA AAAAPASKAGATECGKSGTCVSISSSTSDSSNESRLGHSVSTDSFLKHNE ANVPSLLHRGSAGCASSFSSNTSEQVTETKPFPTTHHLTAPFTGVAAVAP FVAIGDNQGPVRHMIDWERSSKQITTWGTNPVLQQYQQHSLSGSKGSDHA GVAAIACSPAPSAHFKRPRPTTTKSTTTTSSSNDTGRAQTPSNHDISPQE FLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQ LQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDL GRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWR EWKEFFDSKKEKYWAPLPGSSCETELIVRGAPKIEDGEEETGHGVRPTGT NGRRGDSPTALHSASAAKPVTASMAGSSSEEEGEEGGEEEGEEEGEEGGE EQGEEQQQPKRVSARQLQRKRSRSLEKSQVDAGVSVTSF* back to topmRNA from alignment at chr12:493713..495482- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01640.1 ID=NO12G01640.1|Name=NO12G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp|location=Sequence derived from alignment at chr12:493713..495482- (Nannochloropsis oceanica) ATGCCCTTCCGAGGTAGTCTCATCATCTATAGCCAGCTCATTTGCTCAAA
TGCACCTTTCCACCTCTCCCTCCCCTCTTCCCACAGTGCCCGTCGTCCGA
CGCAAGCTACAGCGGTGCAAGGGCTTGAACAGGAGTCAGGGTTTCTCAAC
GCCTCTTCTTCCGTTCGCCTCTTTCGCCCAAAACTTGCTGACGCCGTCCC
CCCTCCGCTTCTGTGGTGCTTCATGGTGACGATGTGCGAAATGGTGACCA
CTGAAGTATCTGCCGAGACCGAAGATCGTGACGATGCTGTCCTCGTTGCA
GCAGCAGCAGCCCCAGCATCTAAAGCAGGCGCCACGGAATGCGGAAAGTC
TGGCACATGTGTAAGCATAAGTAGCAGCACGAGCGACAGCAGCAATGAGT
CACGCCTCGGGCATAGCGTCAGCACTGACAGCTTTCTCAAACACAACGAA
GCGAACGTTCCCTCTCTTCTCCACCGCGGCAGCGCTGGATGCGCGAGCAG
TTTCAGCAGCAACACTTCCGAGCAGGTCACCGAGACCAAGCCCTTCCCCA
CAACCCACCACCTGACTGCGCCCTTCACGGGCGTGGCCGCCGTGGCTCCC
TTCGTAGCTATCGGCGACAACCAAGGCCCCGTGCGGCACATGATAGATTG
GGAGCGATCAAGCAAGCAAATCACTACCTGGGGCACCAACCCAGTCCTCC
AACAATACCAACAACACAGCCTGAGCGGCAGCAAAGGTTCAGACCATGCA
GGAGTGGCCGCCATTGCCTGCAGCCCCGCCCCCAGCGCACACTTCAAAAG
ACCACGACCCACCACTACCAAAAGCACCACCACTACCAGCAGCAGCAATG
ATACGGGAAGGGCACAAACCCCTTCGAATCACGACATATCCCCCCAAGAA
TTCCTCTGGGGCATACTGCAAGAGCGGGGGTATGAGACTTCGCCTTTGTT
TTCCAAGACGCAAGCTTTCTTCCGCCCGCCCACCCCGAAGCAAGTAGAAG
ATTATGACATTGCTCTTTTGAACGCCGTAAAAACGGGGGATTTGGCACAA
TTGCAGGACATGGCTCAACAGGGCCGACAGATGGATGCGTGTAATAAATA
CGGAGAGAGCATCGTCCACATCTCGTGCCGAAGGGGCCAGGCGGAAACGT
TAAGGTTCTTGTTGGCTCACGGGGGGAAGGTGCACATGTGTGATGATTTG
GGAAGGACGCCATTGCATGACGCGTGTTGGGCGAAGGAGCCGGTGTTCGA
CTGTATATCAACAATCTTAGACGCGGACCCCGAGTTAATTCGTATGGTGG
ATTGTCGCGGAGCAAGTCCTTTGGCCTACATTCGGAGAGCGCATTGGAGG
GAATGGAAGGAGTTTTTCGACAGCAAGAAAGAGAAGTACTGGGCGCCGTT
GCCGGGGTCTTCGTGTGAGACGGAGTTGATAGTGAGGGGGGCACCGAAGA
TCGAGGATGGGGAGGAGGAGACGGGGCATGGCGTGAGACCGACGGGTACG
AATGGAAGAAGAGGGGACAGTCCCACCGCGCTGCACTCGGCATCGGCTGC
TAAACCTGTGACTGCATCGATGGCGGGGTCTTCATCGGAGGAGGAGGGGG
AGGAGGGAGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGGAGGGGAG
GAGCAGGGGGAGGAGCAGCAGCAGCCTAAGAGGGTGAGTGCGAGGCAACT
GCAGAGGAAGCGGTCGCGCAGTCTTGAGAAAAGCCAGGTCGATGCTGGGG
TGTCTGTAACTTCCTTTTAG back to topCoding sequence (CDS) from alignment at chr12:493713..495482- >NO12G01640.1 ID=NO12G01640.1|Name=NO12G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at chr12:493713..495482- (Nannochloropsis oceanica) ATGCCCTTCCGAGGTAGTCTCATCATCTATAGCCAGCTCATTTGCTCAAA TGCACCTTTCCACCTCTCCCTCCCCTCTTCCCACAGTGCCCGTCGTCCGA CGCAAGCTACAGCGGTGCAAGGGCTTGAACAGGAGTCAGGGTTTCTCAAC GCCTCTTCTTCCGTTCGCCTCTTTCGCCCAAAACTTGCTGACGCCGTCCC CCCTCCGCTTCTGTGGTGCTTCATGGTGACGATGTGCGAAATGGTGACCA CTGAAGTATCTGCCGAGACCGAAGATCGTGACGATGCTGTCCTCGTTGCA GCAGCAGCAGCCCCAGCATCTAAAGCAGGCGCCACGGAATGCGGAAAGTC TGGCACATGTGTAAGCATAAGTAGCAGCACGAGCGACAGCAGCAATGAGT CACGCCTCGGGCATAGCGTCAGCACTGACAGCTTTCTCAAACACAACGAA GCGAACGTTCCCTCTCTTCTCCACCGCGGCAGCGCTGGATGCGCGAGCAG TTTCAGCAGCAACACTTCCGAGCAGGTCACCGAGACCAAGCCCTTCCCCA CAACCCACCACCTGACTGCGCCCTTCACGGGCGTGGCCGCCGTGGCTCCC TTCGTAGCTATCGGCGACAACCAAGGCCCCGTGCGGCACATGATAGATTG GGAGCGATCAAGCAAGCAAATCACTACCTGGGGCACCAACCCAGTCCTCC AACAATACCAACAACACAGCCTGAGCGGCAGCAAAGGTTCAGACCATGCA GGAGTGGCCGCCATTGCCTGCAGCCCCGCCCCCAGCGCACACTTCAAAAG ACCACGACCCACCACTACCAAAAGCACCACCACTACCAGCAGCAGCAATG ATACGGGAAGGGCACAAACCCCTTCGAATCACGACATATCCCCCCAAGAA TTCCTCTGGGGCATACTGCAAGAGCGGGGGTATGAGACTTCGCCTTTGTT TTCCAAGACGCAAGCTTTCTTCCGCCCGCCCACCCCGAAGCAAGTAGAAG ATTATGACATTGCTCTTTTGAACGCCGTAAAAACGGGGGATTTGGCACAA TTGCAGGACATGGCTCAACAGGGCCGACAGATGGATGCGTGTAATAAATA CGGAGAGAGCATCGTCCACATCTCGTGCCGAAGGGGCCAGGCGGAAACGT TAAGGTTCTTGTTGGCTCACGGGGGGAAGGTGCACATGTGTGATGATTTG GGAAGGACGCCATTGCATGACGCGTGTTGGGCGAAGGAGCCGGTGTTCGA CTGTATATCAACAATCTTAGACGCGGACCCCGAGTTAATTCGTATGGTGG ATTGTCGCGGAGCAAGTCCTTTGGCCTACATTCGGAGAGCGCATTGGAGG GAATGGAAGGAGTTTTTCGACAGCAAGAAAGAGAAGTACTGGGCGCCGTT GCCGGGGTCTTCGTGTGAGACGGAGTTGATAGTGAGGGGGGCACCGAAGA TCGAGGATGGGGAGGAGGAGACGGGGCATGGCGTGAGACCGACGGGTACG AATGGAAGAAGAGGGGACAGTCCCACCGCGCTGCACTCGGCATCGGCTGC TAAACCTGTGACTGCATCGATGGCGGGGTCTTCATCGGAGGAGGAGGGGG AGGAGGGAGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGGAGGGGAG GAGCAGGGGGAGGAGCAGCAGCAGCCTAAGAGGGTGAGTGCGAGGCAACT GCAGAGGAAGCGGTCGCGCAGTCTTGAGAAAAGCCAGGTCGATGCTGGGG TGTCTGTAACTTCCTTTTAG back to top
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