NO12G01640.1, NO12G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01640.1
Unique NameNO12G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1770
Alignment locationchr12:493713..495482 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:493713..495482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G01640.1 vs.
Match: XP_005856127.1 (hypothetical protein NGA_0334800 [Nannochloropsis gaditana CCMP526]; EKU20263.1 hypothetical protein NGA_0334800 [Nannochloropsis gaditana CCMP526]; EWM25880.1 Ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 375.9 bits (964), Expect = 2.200e-100
Identity = 219/445 (49.21%), Postives = 272/445 (61.12%), Query Frame = 0
Query:  134 SRLGHSVSTDSFLKHNEANVPSLLHRGSAGCASSFSSNTSEQVTETKPFPTTHHLTAPFTGVAAVAPFVAIGDNQGPVRHMIDWERSSKQITTWGTNPVLQQYQQHSLSGSKGSDHAGVAAIACSPAPSAHFKRPRPTTTKSTTTTSSSNDTGRAQTPSNHDISPQEFLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQLQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDLGRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWREWKEFFDSKKEKYWAPLPGSSCETELIVRGAPKIEDGEEETGHGVR--PTGTNGRRGDSPTALHSASAAKPVTASMAGSSSEEEGEEGGEEEGEEEGEEGGEEQGEEQQQPKRVSARQLQRKRSRSLE 577
            +R+ HS STDSF   ++A   S L      C    ++ +++      P  T        TG           + +G +  M +WE++SK  TTWG + VLQ++QQ  +  S   D  GV  ++CSP   A  KRPR   T+  +  +  N+          + SPQ+FLWGILQERGYETSPL +KTQAFFRPPT KQV DYDI L+ AV+TGDL  L+DMA  GRQMDACN++GESIVHISCRRGQAETLRFLL +GG+VHMCDDLGRTPLHDACWAK PVFDC+S I+D DP LIR+VDCRGA+PL+YIRR HW EW+EFFDSKKEKYWAPLPG +              D E     GV   P G      ++   LHS+SAA+PVTA+  G S++ EGEE                      Q  R S RQ QRKRS++++
Sbjct:   46 NRISHSASTDSFFGADKA---STLSSEPEHCRELLNNASNDDAVTVSPSHTASADRGSGTGDV---------EEKGRLLAMEEWEQASKNTTTWGVDMVLQRHQQQ-IFDSDSMDTLGVIPLSCSPPSGAGCKRPRKKMTRPASEPALLNN----------EASPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLPGCASHAR------SGRSDSESTISGGVEREPRGQK----ENVETLHSSSAARPVTAT--GGSTDREGEE---------------------VQQTRTSERQRQRKRSKNVK 434          
The following BLAST results are available for this feature:
BLAST of NO12G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856127.12.200e-10049.21hypothetical protein NGA_0334800 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01640NO12G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01640.1NO12G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01640.1.cds1NO12G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01640.1 ID=NO12G01640.1|Name=NO12G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp
ATGCCCTTCCGAGGTAGTCTCATCATCTATAGCCAGCTCATTTGCTCAAA
TGCACCTTTCCACCTCTCCCTCCCCTCTTCCCACAGTGCCCGTCGTCCGA
CGCAAGCTACAGCGGTGCAAGGGCTTGAACAGGAGTCAGGGTTTCTCAAC
GCCTCTTCTTCCGTTCGCCTCTTTCGCCCAAAACTTGCTGACGCCGTCCC
CCCTCCGCTTCTGTGGTGCTTCATGGTGACGATGTGCGAAATGGTGACCA
CTGAAGTATCTGCCGAGACCGAAGATCGTGACGATGCTGTCCTCGTTGCA
GCAGCAGCAGCCCCAGCATCTAAAGCAGGCGCCACGGAATGCGGAAAGTC
TGGCACATGTGTAAGCATAAGTAGCAGCACGAGCGACAGCAGCAATGAGT
CACGCCTCGGGCATAGCGTCAGCACTGACAGCTTTCTCAAACACAACGAA
GCGAACGTTCCCTCTCTTCTCCACCGCGGCAGCGCTGGATGCGCGAGCAG
TTTCAGCAGCAACACTTCCGAGCAGGTCACCGAGACCAAGCCCTTCCCCA
CAACCCACCACCTGACTGCGCCCTTCACGGGCGTGGCCGCCGTGGCTCCC
TTCGTAGCTATCGGCGACAACCAAGGCCCCGTGCGGCACATGATAGATTG
GGAGCGATCAAGCAAGCAAATCACTACCTGGGGCACCAACCCAGTCCTCC
AACAATACCAACAACACAGCCTGAGCGGCAGCAAAGGTTCAGACCATGCA
GGAGTGGCCGCCATTGCCTGCAGCCCCGCCCCCAGCGCACACTTCAAAAG
ACCACGACCCACCACTACCAAAAGCACCACCACTACCAGCAGCAGCAATG
ATACGGGAAGGGCACAAACCCCTTCGAATCACGACATATCCCCCCAAGAA
TTCCTCTGGGGCATACTGCAAGAGCGGGGGTATGAGACTTCGCCTTTGTT
TTCCAAGACGCAAGCTTTCTTCCGCCCGCCCACCCCGAAGCAAGTAGAAG
ATTATGACATTGCTCTTTTGAACGCCGTAAAAACGGGGGATTTGGCACAA
TTGCAGGACATGGCTCAACAGGGCCGACAGATGGATGCGTGTAATAAATA
CGGAGAGAGCATCGTCCACATCTCGTGCCGAAGGGGCCAGGCGGAAACGT
TAAGGTTCTTGTTGGCTCACGGGGGGAAGGTGCACATGTGTGATGATTTG
GGAAGGACGCCATTGCATGACGCGTGTTGGGCGAAGGAGCCGGTGTTCGA
CTGTATATCAACAATCTTAGACGCGGACCCCGAGTTAATTCGTATGGTGG
ATTGTCGCGGAGCAAGTCCTTTGGCCTACATTCGGAGAGCGCATTGGAGG
GAATGGAAGGAGTTTTTCGACAGCAAGAAAGAGAAGTACTGGGCGCCGTT
GCCGGGGTCTTCGTGTGAGACGGAGTTGATAGTGAGGGGGGCACCGAAGA
TCGAGGATGGGGAGGAGGAGACGGGGCATGGCGTGAGACCGACGGGTACG
AATGGAAGAAGAGGGGACAGTCCCACCGCGCTGCACTCGGCATCGGCTGC
TAAACCTGTGACTGCATCGATGGCGGGGTCTTCATCGGAGGAGGAGGGGG
AGGAGGGAGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGGAGGGGAG
GAGCAGGGGGAGGAGCAGCAGCAGCCTAAGAGGGTGAGTGCGAGGCAACT
GCAGAGGAAGCGGTCGCGCAGTCTTGAGAAAAGCCAGGTCGATGCTGGGG
TGTCTGTAACTTCCTTTTAG
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protein sequence of NO12G01640.1

>NO12G01640.1-protein ID=NO12G01640.1-protein|Name=NO12G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MPFRGSLIIYSQLICSNAPFHLSLPSSHSARRPTQATAVQGLEQESGFLN
ASSSVRLFRPKLADAVPPPLLWCFMVTMCEMVTTEVSAETEDRDDAVLVA
AAAAPASKAGATECGKSGTCVSISSSTSDSSNESRLGHSVSTDSFLKHNE
ANVPSLLHRGSAGCASSFSSNTSEQVTETKPFPTTHHLTAPFTGVAAVAP
FVAIGDNQGPVRHMIDWERSSKQITTWGTNPVLQQYQQHSLSGSKGSDHA
GVAAIACSPAPSAHFKRPRPTTTKSTTTTSSSNDTGRAQTPSNHDISPQE
FLWGILQERGYETSPLFSKTQAFFRPPTPKQVEDYDIALLNAVKTGDLAQ
LQDMAQQGRQMDACNKYGESIVHISCRRGQAETLRFLLAHGGKVHMCDDL
GRTPLHDACWAKEPVFDCISTILDADPELIRMVDCRGASPLAYIRRAHWR
EWKEFFDSKKEKYWAPLPGSSCETELIVRGAPKIEDGEEETGHGVRPTGT
NGRRGDSPTALHSASAAKPVTASMAGSSSEEEGEEGGEEEGEEEGEEGGE
EQGEEQQQPKRVSARQLQRKRSRSLEKSQVDAGVSVTSF*
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mRNA from alignment at chr12:493713..495482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01640.1 ID=NO12G01640.1|Name=NO12G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp|location=Sequence derived from alignment at chr12:493713..495482- (Nannochloropsis oceanica)
ATGCCCTTCCGAGGTAGTCTCATCATCTATAGCCAGCTCATTTGCTCAAA TGCACCTTTCCACCTCTCCCTCCCCTCTTCCCACAGTGCCCGTCGTCCGA CGCAAGCTACAGCGGTGCAAGGGCTTGAACAGGAGTCAGGGTTTCTCAAC GCCTCTTCTTCCGTTCGCCTCTTTCGCCCAAAACTTGCTGACGCCGTCCC CCCTCCGCTTCTGTGGTGCTTCATGGTGACGATGTGCGAAATGGTGACCA CTGAAGTATCTGCCGAGACCGAAGATCGTGACGATGCTGTCCTCGTTGCA GCAGCAGCAGCCCCAGCATCTAAAGCAGGCGCCACGGAATGCGGAAAGTC TGGCACATGTGTAAGCATAAGTAGCAGCACGAGCGACAGCAGCAATGAGT CACGCCTCGGGCATAGCGTCAGCACTGACAGCTTTCTCAAACACAACGAA GCGAACGTTCCCTCTCTTCTCCACCGCGGCAGCGCTGGATGCGCGAGCAG TTTCAGCAGCAACACTTCCGAGCAGGTCACCGAGACCAAGCCCTTCCCCA CAACCCACCACCTGACTGCGCCCTTCACGGGCGTGGCCGCCGTGGCTCCC TTCGTAGCTATCGGCGACAACCAAGGCCCCGTGCGGCACATGATAGATTG GGAGCGATCAAGCAAGCAAATCACTACCTGGGGCACCAACCCAGTCCTCC AACAATACCAACAACACAGCCTGAGCGGCAGCAAAGGTTCAGACCATGCA GGAGTGGCCGCCATTGCCTGCAGCCCCGCCCCCAGCGCACACTTCAAAAG ACCACGACCCACCACTACCAAAAGCACCACCACTACCAGCAGCAGCAATG ATACGGGAAGGGCACAAACCCCTTCGAATCACGACATATCCCCCCAAGAA TTCCTCTGGGGCATACTGCAAGAGCGGGGGTATGAGACTTCGCCTTTGTT TTCCAAGACGCAAGCTTTCTTCCGCCCGCCCACCCCGAAGCAAGTAGAAG ATTATGACATTGCTCTTTTGAACGCCGTAAAAACGGGGGATTTGGCACAA TTGCAGGACATGGCTCAACAGGGCCGACAGATGGATGCGTGTAATAAATA CGGAGAGAGCATCGTCCACATCTCGTGCCGAAGGGGCCAGGCGGAAACGT TAAGGTTCTTGTTGGCTCACGGGGGGAAGGTGCACATGTGTGATGATTTG GGAAGGACGCCATTGCATGACGCGTGTTGGGCGAAGGAGCCGGTGTTCGA CTGTATATCAACAATCTTAGACGCGGACCCCGAGTTAATTCGTATGGTGG ATTGTCGCGGAGCAAGTCCTTTGGCCTACATTCGGAGAGCGCATTGGAGG GAATGGAAGGAGTTTTTCGACAGCAAGAAAGAGAAGTACTGGGCGCCGTT GCCGGGGTCTTCGTGTGAGACGGAGTTGATAGTGAGGGGGGCACCGAAGA TCGAGGATGGGGAGGAGGAGACGGGGCATGGCGTGAGACCGACGGGTACG AATGGAAGAAGAGGGGACAGTCCCACCGCGCTGCACTCGGCATCGGCTGC TAAACCTGTGACTGCATCGATGGCGGGGTCTTCATCGGAGGAGGAGGGGG AGGAGGGAGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGGAGGGGAG GAGCAGGGGGAGGAGCAGCAGCAGCCTAAGAGGGTGAGTGCGAGGCAACT GCAGAGGAAGCGGTCGCGCAGTCTTGAGAAAAGCCAGGTCGATGCTGGGG TGTCTGTAACTTCCTTTTAG
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Coding sequence (CDS) from alignment at chr12:493713..495482-

>NO12G01640.1 ID=NO12G01640.1|Name=NO12G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at chr12:493713..495482- (Nannochloropsis oceanica)
ATGCCCTTCCGAGGTAGTCTCATCATCTATAGCCAGCTCATTTGCTCAAA
TGCACCTTTCCACCTCTCCCTCCCCTCTTCCCACAGTGCCCGTCGTCCGA
CGCAAGCTACAGCGGTGCAAGGGCTTGAACAGGAGTCAGGGTTTCTCAAC
GCCTCTTCTTCCGTTCGCCTCTTTCGCCCAAAACTTGCTGACGCCGTCCC
CCCTCCGCTTCTGTGGTGCTTCATGGTGACGATGTGCGAAATGGTGACCA
CTGAAGTATCTGCCGAGACCGAAGATCGTGACGATGCTGTCCTCGTTGCA
GCAGCAGCAGCCCCAGCATCTAAAGCAGGCGCCACGGAATGCGGAAAGTC
TGGCACATGTGTAAGCATAAGTAGCAGCACGAGCGACAGCAGCAATGAGT
CACGCCTCGGGCATAGCGTCAGCACTGACAGCTTTCTCAAACACAACGAA
GCGAACGTTCCCTCTCTTCTCCACCGCGGCAGCGCTGGATGCGCGAGCAG
TTTCAGCAGCAACACTTCCGAGCAGGTCACCGAGACCAAGCCCTTCCCCA
CAACCCACCACCTGACTGCGCCCTTCACGGGCGTGGCCGCCGTGGCTCCC
TTCGTAGCTATCGGCGACAACCAAGGCCCCGTGCGGCACATGATAGATTG
GGAGCGATCAAGCAAGCAAATCACTACCTGGGGCACCAACCCAGTCCTCC
AACAATACCAACAACACAGCCTGAGCGGCAGCAAAGGTTCAGACCATGCA
GGAGTGGCCGCCATTGCCTGCAGCCCCGCCCCCAGCGCACACTTCAAAAG
ACCACGACCCACCACTACCAAAAGCACCACCACTACCAGCAGCAGCAATG
ATACGGGAAGGGCACAAACCCCTTCGAATCACGACATATCCCCCCAAGAA
TTCCTCTGGGGCATACTGCAAGAGCGGGGGTATGAGACTTCGCCTTTGTT
TTCCAAGACGCAAGCTTTCTTCCGCCCGCCCACCCCGAAGCAAGTAGAAG
ATTATGACATTGCTCTTTTGAACGCCGTAAAAACGGGGGATTTGGCACAA
TTGCAGGACATGGCTCAACAGGGCCGACAGATGGATGCGTGTAATAAATA
CGGAGAGAGCATCGTCCACATCTCGTGCCGAAGGGGCCAGGCGGAAACGT
TAAGGTTCTTGTTGGCTCACGGGGGGAAGGTGCACATGTGTGATGATTTG
GGAAGGACGCCATTGCATGACGCGTGTTGGGCGAAGGAGCCGGTGTTCGA
CTGTATATCAACAATCTTAGACGCGGACCCCGAGTTAATTCGTATGGTGG
ATTGTCGCGGAGCAAGTCCTTTGGCCTACATTCGGAGAGCGCATTGGAGG
GAATGGAAGGAGTTTTTCGACAGCAAGAAAGAGAAGTACTGGGCGCCGTT
GCCGGGGTCTTCGTGTGAGACGGAGTTGATAGTGAGGGGGGCACCGAAGA
TCGAGGATGGGGAGGAGGAGACGGGGCATGGCGTGAGACCGACGGGTACG
AATGGAAGAAGAGGGGACAGTCCCACCGCGCTGCACTCGGCATCGGCTGC
TAAACCTGTGACTGCATCGATGGCGGGGTCTTCATCGGAGGAGGAGGGGG
AGGAGGGAGGGGAGGAGGAGGGGGAGGAGGAGGGGGAGGAGGGAGGGGAG
GAGCAGGGGGAGGAGCAGCAGCAGCCTAAGAGGGTGAGTGCGAGGCAACT
GCAGAGGAAGCGGTCGCGCAGTCTTGAGAAAAGCCAGGTCGATGCTGGGG
TGTCTGTAACTTCCTTTTAG
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Synonyms
Publications