NO12G01630, NO12G01630 (gene) Nannochloropsis oceanica

Overview
NameNO12G01630
Unique NameNO12G01630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1092
Alignment locationchr12:491507..492598 -

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Properties
Property NameValue
DescriptionFerredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:491507..492598 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0009055electron transfer activity
Vocabulary: INTERPRO
TermDefinition
IPR0178964Fe4S_Fe-S-bd
IPR0010803Fe4S_ferredoxin
Homology
BLAST of NO12G01630 vs. NCBI_GenBank
Match: XP_005856128.1 (ferredoxin [Nannochloropsis gaditana CCMP526] >EKU20264.1 ferredoxin [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 315.5 bits (807), Expect = 2.200e-82
Identity = 160/219 (73.06%), Postives = 175/219 (79.91%), Query Frame = 0
Query:   90 DSQNEEVDKIGFSISKTKRDGLSTPSDGGSTDADDRAAMQRNLRQAQQASKMMASGASAEQLSAYTGIKLVDLDEGFVPKLQETPSHMFVDRDESGALKQARFVYVDEYTCIGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHYVPFEELERLEGERPGIKINYKARLVGSD----TSSADLGMQDISGNNDLRCTNCPTRG 305
            D   EE D  GFS+ + KR  ++ P        +D A +QR  RQA+QASKMMASGASA QLSAYTGIKLV+L+ GF PKLQETPSH FVDRDE G LKQARFVYVDEYTCIGCTNCAM AP TFYMDDEHGRARV+QQWKDRP+TIQTAIETCPVDCIHYVPFEELERLE ER G+ INYKARLVGSD    +S  D GMQ+ISGN D RC NCP+RG
Sbjct:    6 DKSGEE-DGTGFSVVR-KRGVVAGPGGYEDIGPEDIAELQRKQRQAEQASKMMASGASAAQLSAYTGIKLVELETGFTPKLQETPSHQFVDRDEEGTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRG 222          
BLAST of NO12G01630 vs. NCBI_GenBank
Match: EWM25866.1 (ferredoxin [Nannochloropsis gaditana])

HSP 1 Score: 315.5 bits (807), Expect = 2.200e-82
Identity = 160/219 (73.06%), Postives = 175/219 (79.91%), Query Frame = 0
Query:   90 DSQNEEVDKIGFSISKTKRDGLSTPSDGGSTDADDRAAMQRNLRQAQQASKMMASGASAEQLSAYTGIKLVDLDEGFVPKLQETPSHMFVDRDESGALKQARFVYVDEYTCIGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHYVPFEELERLEGERPGIKINYKARLVGSD----TSSADLGMQDISGNNDLRCTNCPTRG 305
            D   EE D  GFS+ + KR  ++ P        +D A +QR  RQA+QASKMMASGASA QLSAYTGIKLV+L+ GF PKLQETPSH FVDRDE G LKQARFVYVDEYTCIGCTNCAM AP TFYMDDEHGRARV+QQWKDRP+TIQTAIETCPVDCIHYVPFEELERLE ER G+ INYKARLVGSD    +S  D GMQ+ISGN D RC NCP+RG
Sbjct:   11 DKSGEE-DGTGFSVVR-KRGVVAGPGGYEDIGPEDIAELQRKQRQAEQASKMMASGASAAQLSAYTGIKLVELETGFTPKLQETPSHQFVDRDEEGTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRG 227          
BLAST of NO12G01630 vs. NCBI_GenBank
Match: GAX27249.1 (ferredoxin [Fistulifera solaris])

HSP 1 Score: 173.7 bits (439), Expect = 1.000e-39
Identity = 86/166 (51.81%), Postives = 108/166 (65.06%), Query Frame = 0
Query:  170 LQETPSHMFVD-RDESGALKQARFVYVDEYTCIGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHYVPFEELERLEGERPGIKINYKARLVGSDTSSADL-----------GMQDISGNNDLRCTNCPTRGCFNCPMWGVGENPEYKRKQ 324
            L    SH  V+  DE+G   + + VYVDE+TCIGCTNCAM+A +TFYM+ EHGRARV+QQW D  +TIQ AIETCPVDCIHYVP+EEL +LE ER  + IN+KARLV    +   L             Q ISGN+  RC NCP+RG          +NPEY++++
Sbjct:  185 LATVESHTRVEIDDETGEPVRLQMVYVDEHTCIGCTNCAMIAQSTFYMNPEHGRARVFQQWGDDDETIQIAIETCPVDCIHYVPYEELVKLEIERRDMNINFKARLVSQAENGNSLSHRVGGANRFTAPQKISGNSAPRCNNCPSRGXXXXXXXXXXKNPEYEKRE 350          
BLAST of NO12G01630 vs. NCBI_GenBank
Match: GAX27709.1 (ferredoxin [Fistulifera solaris])

HSP 1 Score: 173.3 bits (438), Expect = 1.400e-39
Identity = 86/166 (51.81%), Postives = 108/166 (65.06%), Query Frame = 0
Query:  170 LQETPSHMFVDRD-ESGALKQARFVYVDEYTCIGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHYVPFEELERLEGERPGIKINYKARLVGSDTSSADL-----------GMQDISGNNDLRCTNCPTRGCFNCPMWGVGENPEYKRKQ 324
            L    SH  V+ D E+G   + + VYVDE+TCIGCTNCAM+A +TFYM+ EHGRARV+QQW D  +TIQ AIETCPVDCIHYVP+EEL +LE ER  + IN+KARLV    +   L             Q ISGN+  RC NCP+RG          +NPEY++++
Sbjct:  195 LATVESHTRVEIDEETGEPVRLQMVYVDEHTCIGCTNCAMIAQSTFYMNPEHGRARVFQQWGDDDETIQIAIETCPVDCIHYVPYEELVKLEIERRDMNINFKARLVSQAENGNSLSHRVGGANRFTAPQKISGNSAPRCNNCPSRGXXXXXXXXXXKNPEYEKRE 360          
BLAST of NO12G01630 vs. NCBI_GenBank
Match: CBJ27569.1 (ferredoxin (cyanobacterial type ferredoxin family) [Ectocarpus siliculosus])

HSP 1 Score: 172.9 bits (437), Expect = 1.800e-39
Identity = 86/167 (51.50%), Postives = 109/167 (65.27%), Query Frame = 0
Query:  137 QASKMMASGASAEQLSAYTGIKLVDLDEGFVPK--LQETPSHMFVDRDESGALKQARFVYVDEYTCIGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHYVPFEELERLEGERPGIKINYKARLVGSDTSSADLGMQDISGNNDLRCTNCP 302
            + +K+ A  A+A     +     VD       +  L+  PS   V +DE+G   + RFVYVDEYTCIGCT+C   AP+TF+M++E GRARVYQQ +D    +QTAI TCPVDCIHYV F EL RLE ER GI IN+KA+LVG+D  +   GMQ ISG+  +RC NCP
Sbjct:  287 EEAKVRADQAAARAFEKFNQAAFVDSSAWRAEEELLKVAPSSSLVKKDENGVPLEDRFVYVDEYTCIGCTHCNHQAPSTFFMEEEFGRARVYQQGRDTADAVQTAILTCPVDCIHYVDFPELVRLEKEREGISINFKAKLVGNDHDNVANGMQRISGDGGMRCDNCP 453          
BLAST of NO12G01630 vs. NCBI_GenBank
Match: OSX71709.1 (hypothetical protein BU14_0507s0007 [Porphyra umbilicalis])

HSP 1 Score: 154.8 bits (390), Expect = 5.000e-34
Identity = 74/135 (54.81%), Postives = 91/135 (67.41%), Query Frame = 0
Query:  191 RFVYVDEYTCIGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHYVPFEELERLEGERPGIKINYKARLVGSD-TSSADLGMQ--DISGNNDLRCTNCPTRGCFNCPMWGVGENPEYKRK 323
            RFVYVDE  CIGCT+CA  A  TF++DDE GRAR ++Q  D P+T+  AI+TCPV+CI+YV F++L  LE ER G  IN  ARLVG D  S    G    D+     +RC +CP RGC  CP++GVG NPEY RK
Sbjct:    7 RFVYVDEVDCIGCTHCAATARHTFFIDDEWGRARAFRQDGDDPETVAEAIDTCPVNCIYYVSFDDLVTLEREREGQIINNAARLVGGDGVSEGPRGTSEADVMRTGGIRCEDCPGRGCAECPLYGVGRNPEYLRK 141          
BLAST of NO12G01630 vs. NCBI_GenBank
Match: XP_009042343.1 (hypothetical protein AURANDRAFT_72808, partial [Aureococcus anophagefferens] >EGB02960.1 hypothetical protein AURANDRAFT_72808, partial [Aureococcus anophagefferens])

HSP 1 Score: 152.1 bits (383), Expect = 3.200e-33
Identity = 75/154 (48.70%), Postives = 96/154 (62.34%), Query Frame = 0
Query:  175 SHMFVDRDESG------ALKQARFVYVDEYTCIGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHYVPFEELERLEGERPGIKI--NYKARLVGSD-----TSSADLGMQDISGNNDLRCTNCPTRGCFNCPMWGVGE 316
            SH  +D DE G      +      VYVDE TC+GCT CA +AP TF M D+HGRAR + Q  D  +TI+ AI TCPV CIHYVP++EL  LE  R  + +  N+K RLVG++        A   +Q+IS N+ LRC NCPT  C +CPM+GVG+
Sbjct:  545 SHELIDEDEDGDPVSLCSSFTYTAVYVDEATCVGCTMCATIAPQTFLMTDDHGRARSFNQEGDDEETIREAISTCPVSCIHYVPWDELVALERNREAVMLSYNFKGRLVGNEGLGIAADGAGEALQEISTNSALRCNNCPTNECRDCPMFGVGD 698          
BLAST of NO12G01630 vs. NCBI_GenBank
Match: EJK65860.1 (hypothetical protein THAOC_13242 [Thalassiosira oceanica])

HSP 1 Score: 152.1 bits (383), Expect = 3.200e-33
Identity = 91/218 (41.74%), Postives = 122/218 (55.96%), Query Frame = 0
Query:  122 ADDRAAMQRNLRQAQQASKMMASGASAEQLSAYTGIKL-----VDLDE-------------GFVPKLQE------TPSHMFVDRDE-SGALKQARFVYVDEYTCIGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHYVPFEELERLEGERPGIKINYKARLVGSDTSSADL-------------GMQDISGNNDLRCTNCP 302
            AD+ + M +   +A +A +M   G SAE +S+  GI       +D D              GF  +L E        SH  V+ DE +    + + VYVDE +CIGCTNCA +A +TF+M+ EHGRARV+QQW D  +T+Q AI+TCPV+CIHYVP++EL+ LE ER G  IN KARLV    +++ +             G Q ISGN   RC NCP
Sbjct:  100 ADEVSFMAKEAERADKARQMNELGYSAESISSTLGIATDEGMEIDQDNEVFQAFKEETAKTGFGLQLDEEVDMELVESHTTVEWDEDTDEPVRLQMVYVDEVSCIGCTNCACIAQSTFFMEGEHGRARVFQQWGDDDETVQVAIDTCPVNCIHYVPYDELKSLEIERRGQNINNKARLVSQAENASGIGPQATYGGAGAFTGQQKISGNMGSRCNNCP 317          
BLAST of NO12G01630 vs. NCBI_GenBank
Match: XP_005715466.1 (unnamed protein product [Chondrus crispus] >CDF35647.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 136.7 bits (343), Expect = 1.400e-28
Identity = 77/208 (37.02%), Postives = 109/208 (52.40%), Query Frame = 0
Query:  116 DGGSTDADDRAAMQRNLRQAQQASKMMASGASAEQLSAYTGIK-LVDLDEGFVPKLQETPSHMFVDRDESGALKQARFVYVDEYTCIGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHYVPFEELERLEGERPGIKINYKARLV-GSDTSSADLG--MQDISGNNDLRCTNCPTRGCFNCPMWGVGENPEY 320
            DG S + + +   Q          + +    + +    +  ++ +   D      L    S   V+ DE G   + R+VYV+E  CIGCT+CA  A  TF+M+ E GRARV+ Q  D    ++ AI TCPV+CI+YV + +L  LE  R    IN  ARLV GSD S +  G     +  +  +RC +CP RGC  CP++GVGENPEY
Sbjct:   73 DGSSAEGNGKPPAQEGSSAPPSLDESLIGSTALDSEEYFERLREITQADTTLSNPLGLKKSFEIVELDEDGMGPRDRYVYVEERDCIGCTHCATTATGTFFMESEWGRARVFNQSGDTEGDVEVAIGTCPVNCIYYVDWNDLVALENMRDDQVINNTARLVGGSDPSGSRKGTTKTKVMDSGIMRCEDCPGRGCPQCPLFGVGENPEY 280          
BLAST of NO12G01630 vs. NCBI_GenBank
Match: KOO35815.1 (ferredoxin [Chrysochromulina sp. CCMP291])

HSP 1 Score: 136.0 bits (341), Expect = 2.400e-28
Identity = 73/156 (46.79%), Postives = 92/156 (58.97%), Query Frame = 0
Query:  174 PSHMFVDRDESGALK-QARFVYVDEYTCIGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHYVPFEELERLEGERPGIKINYKARLVGSDTSSADLG------MQDISGNN---DLRCTNCPTRGCFNCPMWGVGENPEY 320
            PSHM ++ DE        R  YVDE TCIGC NCA VA  TF+M+D+ G+ARVYQQ  D  + I  AI+TCPV+CIHYV  E+L  LE ER   + +      GS   +   G       + +  NN    +RC NCP+RGC  CPM+GVG+NP Y
Sbjct:   30 PSHMRLELDEETKKPVLPRMTYVDEQTCIGCKNCACVAKNTFFMEDDFGKARVYQQGGDTVEDIAIAIDTCPVNCIHYVSHEDLVILEQERMAREGDVTINNYGSFKQAWTGGALAVPKTKALFYNNPAMGMRCNNCPSRGCRECPMFGVGQNPIY 185          
The following BLAST results are available for this feature:
BLAST of NO12G01630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856128.12.200e-8273.06ferredoxin [Nannochloropsis gaditana CCMP526] >EKU... [more]
EWM25866.12.200e-8273.06ferredoxin [Nannochloropsis gaditana][more]
GAX27249.11.000e-3951.81ferredoxin [Fistulifera solaris][more]
GAX27709.11.400e-3951.81ferredoxin [Fistulifera solaris][more]
CBJ27569.11.800e-3951.50ferredoxin (cyanobacterial type ferredoxin family)... [more]
OSX71709.15.000e-3454.81hypothetical protein BU14_0507s0007 [Porphyra umbi... [more]
XP_009042343.13.200e-3348.70hypothetical protein AURANDRAFT_72808, partial [Au... [more]
EJK65860.13.200e-3341.74hypothetical protein THAOC_13242 [Thalassiosira oc... [more]
XP_005715466.11.400e-2837.02unnamed protein product [Chondrus crispus] >CDF356... [more]
KOO35815.12.400e-2846.79ferredoxin [Chrysochromulina sp. CCMP291][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010081NSK010081Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01630.1NO12G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100054g21gene4647Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01630.1NO12G01630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01630 ID=NO12G01630|Name=NO12G01630|organism=Nannochloropsis oceanica|type=gene|length=1092bp
ATGGCCGGTGGCGAAGTGATGCGGCGGGCAGTACAACCACAGCCATTGTG
GCGAAACCCATGGCAAAGCCTGACTACAACTCACATCGGGTTCACTCTTC
TGCTGCTGCTTATCCCCGTGCATGTAGCTGAAGCTTTTGTCTTTCCGCCT
TGGGTTTTCGGGTCAACTTCGCCGGCAGCATTACGGAGAGGAACAATGCA
GCGGCAGCAGGAGTTCGTCCCCAGCAAAGTGTTCACCCTCCTTTGGGCAG
CTTCGGGGGATGACACGGATAGCCAGAATGAAGAAGTAGACAAAATCGGC
TTCTCCATCTCGAAGACGAAGCGGGATGGTCTTTCCACGCCCTCGGACGG
GGGAAGCACCGACGCCGATGACAGGGCGGCCATGCAGCGAAACCTGCGGC
AGGCCCAACAAGCGTCCAAGATGATGGCATCGGGTGCGAGTGCAGAGCAA
TTGAGTGCATATACGGGTATCAAATTAGTGGATTTGGACGAGGGCTTCGT
TCCCAAGCTGCAAGAGACGCCGTCGCACATGTTCGTGGACCGCGACGAGA
GTGGTGCGCTCAAGCAGGCAAGATTTGTGTATGTCGACGAGTACACGTGC
ATTGGCTGTACAAACTGTGCGATGGTGGCACCTGCAACGTTCTACATGGA
CGACGAGCACGGCCGGGCGCGTGTTTACCAGCAGTGGAAAGACCGTCCGA
AAACGATTCAAACTGCCATCGAGACTTGTCCGGTAGATTGCATTCATTAC
GTACCTTTTGAGGAGTTGGAGCGCTTGGAGGGGGAGAGGCCAGGGATCAA
GATCAATTACAAAGCCCGATTGGTGGGTTCGGATACGTCGAGCGCCGATT
TGGGCATGCAAGACATAAGTGGGAACAACGATTTGCGTTGCACCAACTGC
CCGACGCGTGGGTGTTTTAATTGTCCCATGTGGGGTGTGGGGGAAAATCC
GGAGTACAAACGGAAGCAGGATGAGATTGCCAGGAAACGACAGCGGCGGC
GGGCGGCCAAAAAAGGGCAGGGTGGGGGAAGTAGTGGCGGGGGAGACGGA
AAGAGTGGAGGCAGCGCGGGCAGGCGGCGTGTTGATTTATAA
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protein sequence of NO12G01630.1

>NO12G01630.1-protein ID=NO12G01630.1-protein|Name=NO12G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MAGGEVMRRAVQPQPLWRNPWQSLTTTHIGFTLLLLLIPVHVAEAFVFPP
WVFGSTSPAALRRGTMQRQQEFVPSKVFTLLWAASGDDTDSQNEEVDKIG
FSISKTKRDGLSTPSDGGSTDADDRAAMQRNLRQAQQASKMMASGASAEQ
LSAYTGIKLVDLDEGFVPKLQETPSHMFVDRDESGALKQARFVYVDEYTC
IGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHY
VPFEELERLEGERPGIKINYKARLVGSDTSSADLGMQDISGNNDLRCTNC
PTRGCFNCPMWGVGENPEYKRKQDEIARKRQRRRAAKKGQGGGSSGGGDG
KSGGSAGRRRVDL*
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Synonyms
Publications