NO12G01630.1, NO12G01630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01630.1
Unique NameNO12G01630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1092
Alignment locationchr12:491507..492598 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:491507..492598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01630.1 vs.
Match: XP_005856128.1 (ferredoxin [Nannochloropsis gaditana CCMP526]; EKU20264.1 ferredoxin [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 378.6 bits (971), Expect = 2.100e-101
Identity = 196/278 (70.50%), Postives = 218/278 (78.42%), Query Frame = 0 
Query:   90 DSQNEEVDKIGFSISKTKRDGLSTPSDGGSTDADDRAAMQRNLRQAQQASKMMASGASAEQLSAYTGIKLVDLDEGFVPKLQETPSHMFVDRDESGALKQARFVYVDEYTCIGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHYVPFEELERLEGERPGIKINYKARLVGSD----TSSADLGMQDISGNNDLRCTNCPTRGCFNCPMWGVGENPEYKRKQDEIARKRQRRRAAKKGQGGGSSGGGDGKSGGSAGRRRVDL 364
            D   EE D  GFS+ + KR  ++ P        +D A +QR  RQA+QASKMMASGASA QLSAYTGIKLV+L+ GF PKLQETPSH FVDRDE G LKQARFVYVDEYTCIGCTNCAM AP TFYMDDEHGRARV+QQWKDRP+TIQTAIETCPVDCIHYVPFEELERLE ER G+ INYKARLVGSD    +S  D GMQ+ISGN D RC NCP+RGCFNCPM+GVGENPEY+RKQ +IA+KR+RRRA+K     G SG       G  GR+RVDL
Sbjct:    6 DKSGEE-DGTGFSVVR-KRGVVAGPGGYEDIGPEDIAELQRKQRQAEQASKMMASGASAAQLSAYTGIKLVELETGFTPKLQETPSHQFVDRDEEGTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRRASKDNSSEGGSG------SGGTGRKRVDL 275
The following BLAST results are available for this feature:
BLAST of NO12G01630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856128.12.100e-10170.50ferredoxin [Nannochloropsis gaditana CCMP526]; EKU... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01630NO12G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01630.1NO12G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01630.1.cds1NO12G01630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01630.1 ID=NO12G01630.1|Name=NO12G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1092bp
ATGGCCGGTGGCGAAGTGATGCGGCGGGCAGTACAACCACAGCCATTGTG
GCGAAACCCATGGCAAAGCCTGACTACAACTCACATCGGGTTCACTCTTC
TGCTGCTGCTTATCCCCGTGCATGTAGCTGAAGCTTTTGTCTTTCCGCCT
TGGGTTTTCGGGTCAACTTCGCCGGCAGCATTACGGAGAGGAACAATGCA
GCGGCAGCAGGAGTTCGTCCCCAGCAAAGTGTTCACCCTCCTTTGGGCAG
CTTCGGGGGATGACACGGATAGCCAGAATGAAGAAGTAGACAAAATCGGC
TTCTCCATCTCGAAGACGAAGCGGGATGGTCTTTCCACGCCCTCGGACGG
GGGAAGCACCGACGCCGATGACAGGGCGGCCATGCAGCGAAACCTGCGGC
AGGCCCAACAAGCGTCCAAGATGATGGCATCGGGTGCGAGTGCAGAGCAA
TTGAGTGCATATACGGGTATCAAATTAGTGGATTTGGACGAGGGCTTCGT
TCCCAAGCTGCAAGAGACGCCGTCGCACATGTTCGTGGACCGCGACGAGA
GTGGTGCGCTCAAGCAGGCAAGATTTGTGTATGTCGACGAGTACACGTGC
ATTGGCTGTACAAACTGTGCGATGGTGGCACCTGCAACGTTCTACATGGA
CGACGAGCACGGCCGGGCGCGTGTTTACCAGCAGTGGAAAGACCGTCCGA
AAACGATTCAAACTGCCATCGAGACTTGTCCGGTAGATTGCATTCATTAC
GTACCTTTTGAGGAGTTGGAGCGCTTGGAGGGGGAGAGGCCAGGGATCAA
GATCAATTACAAAGCCCGATTGGTGGGTTCGGATACGTCGAGCGCCGATT
TGGGCATGCAAGACATAAGTGGGAACAACGATTTGCGTTGCACCAACTGC
CCGACGCGTGGGTGTTTTAATTGTCCCATGTGGGGTGTGGGGGAAAATCC
GGAGTACAAACGGAAGCAGGATGAGATTGCCAGGAAACGACAGCGGCGGC
GGGCGGCCAAAAAAGGGCAGGGTGGGGGAAGTAGTGGCGGGGGAGACGGA
AAGAGTGGAGGCAGCGCGGGCAGGCGGCGTGTTGATTTATAA
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protein sequence of NO12G01630.1

>NO12G01630.1-protein ID=NO12G01630.1-protein|Name=NO12G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MAGGEVMRRAVQPQPLWRNPWQSLTTTHIGFTLLLLLIPVHVAEAFVFPP
WVFGSTSPAALRRGTMQRQQEFVPSKVFTLLWAASGDDTDSQNEEVDKIG
FSISKTKRDGLSTPSDGGSTDADDRAAMQRNLRQAQQASKMMASGASAEQ
LSAYTGIKLVDLDEGFVPKLQETPSHMFVDRDESGALKQARFVYVDEYTC
IGCTNCAMVAPATFYMDDEHGRARVYQQWKDRPKTIQTAIETCPVDCIHY
VPFEELERLEGERPGIKINYKARLVGSDTSSADLGMQDISGNNDLRCTNC
PTRGCFNCPMWGVGENPEYKRKQDEIARKRQRRRAAKKGQGGGSSGGGDG
KSGGSAGRRRVDL*
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mRNA from alignment at chr12:491507..492598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01630.1 ID=NO12G01630.1|Name=NO12G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1092bp|location=Sequence derived from alignment at chr12:491507..492598- (Nannochloropsis oceanica)
ATGGCCGGTGGCGAAGTGATGCGGCGGGCAGTACAACCACAGCCATTGTG
GCGAAACCCATGGCAAAGCCTGACTACAACTCACATCGGGTTCACTCTTC
TGCTGCTGCTTATCCCCGTGCATGTAGCTGAAGCTTTTGTCTTTCCGCCT
TGGGTTTTCGGGTCAACTTCGCCGGCAGCATTACGGAGAGGAACAATGCA
GCGGCAGCAGGAGTTCGTCCCCAGCAAAGTGTTCACCCTCCTTTGGGCAG
CTTCGGGGGATGACACGGATAGCCAGAATGAAGAAGTAGACAAAATCGGC
TTCTCCATCTCGAAGACGAAGCGGGATGGTCTTTCCACGCCCTCGGACGG
GGGAAGCACCGACGCCGATGACAGGGCGGCCATGCAGCGAAACCTGCGGC
AGGCCCAACAAGCGTCCAAGATGATGGCATCGGGTGCGAGTGCAGAGCAA
TTGAGTGCATATACGGGTATCAAATTAGTGGATTTGGACGAGGGCTTCGT
TCCCAAGCTGCAAGAGACGCCGTCGCACATGTTCGTGGACCGCGACGAGA
GTGGTGCGCTCAAGCAGGCAAGATTTGTGTATGTCGACGAGTACACGTGC
ATTGGCTGTACAAACTGTGCGATGGTGGCACCTGCAACGTTCTACATGGA
CGACGAGCACGGCCGGGCGCGTGTTTACCAGCAGTGGAAAGACCGTCCGA
AAACGATTCAAACTGCCATCGAGACTTGTCCGGTAGATTGCATTCATTAC
GTACCTTTTGAGGAGTTGGAGCGCTTGGAGGGGGAGAGGCCAGGGATCAA
GATCAATTACAAAGCCCGATTGGTGGGTTCGGATACGTCGAGCGCCGATT
TGGGCATGCAAGACATAAGTGGGAACAACGATTTGCGTTGCACCAACTGC
CCGACGCGTGGGTGTTTTAATTGTCCCATGTGGGGTGTGGGGGAAAATCC
GGAGTACAAACGGAAGCAGGATGAGATTGCCAGGAAACGACAGCGGCGGC
GGGCGGCCAAAAAAGGGCAGGGTGGGGGAAGTAGTGGCGGGGGAGACGGA
AAGAGTGGAGGCAGCGCGGGCAGGCGGCGTGTTGATTTATAA
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Coding sequence (CDS) from alignment at chr12:491507..492598-

>NO12G01630.1 ID=NO12G01630.1|Name=NO12G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at chr12:491507..492598- (Nannochloropsis oceanica)
ATGGCCGGTGGCGAAGTGATGCGGCGGGCAGTACAACCACAGCCATTGTG
GCGAAACCCATGGCAAAGCCTGACTACAACTCACATCGGGTTCACTCTTC
TGCTGCTGCTTATCCCCGTGCATGTAGCTGAAGCTTTTGTCTTTCCGCCT
TGGGTTTTCGGGTCAACTTCGCCGGCAGCATTACGGAGAGGAACAATGCA
GCGGCAGCAGGAGTTCGTCCCCAGCAAAGTGTTCACCCTCCTTTGGGCAG
CTTCGGGGGATGACACGGATAGCCAGAATGAAGAAGTAGACAAAATCGGC
TTCTCCATCTCGAAGACGAAGCGGGATGGTCTTTCCACGCCCTCGGACGG
GGGAAGCACCGACGCCGATGACAGGGCGGCCATGCAGCGAAACCTGCGGC
AGGCCCAACAAGCGTCCAAGATGATGGCATCGGGTGCGAGTGCAGAGCAA
TTGAGTGCATATACGGGTATCAAATTAGTGGATTTGGACGAGGGCTTCGT
TCCCAAGCTGCAAGAGACGCCGTCGCACATGTTCGTGGACCGCGACGAGA
GTGGTGCGCTCAAGCAGGCAAGATTTGTGTATGTCGACGAGTACACGTGC
ATTGGCTGTACAAACTGTGCGATGGTGGCACCTGCAACGTTCTACATGGA
CGACGAGCACGGCCGGGCGCGTGTTTACCAGCAGTGGAAAGACCGTCCGA
AAACGATTCAAACTGCCATCGAGACTTGTCCGGTAGATTGCATTCATTAC
GTACCTTTTGAGGAGTTGGAGCGCTTGGAGGGGGAGAGGCCAGGGATCAA
GATCAATTACAAAGCCCGATTGGTGGGTTCGGATACGTCGAGCGCCGATT
TGGGCATGCAAGACATAAGTGGGAACAACGATTTGCGTTGCACCAACTGC
CCGACGCGTGGGTGTTTTAATTGTCCCATGTGGGGTGTGGGGGAAAATCC
GGAGTACAAACGGAAGCAGGATGAGATTGCCAGGAAACGACAGCGGCGGC
GGGCGGCCAAAAAAGGGCAGGGTGGGGGAAGTAGTGGCGGGGGAGACGGA
AAGAGTGGAGGCAGCGCGGGCAGGCGGCGTGTTGATTTATAA
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Synonyms
Publications