NO12G01620, NO12G01620 (gene) Nannochloropsis oceanica

Overview
NameNO12G01620
Unique NameNO12G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1200
Alignment locationchr12:489732..490931 -

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Properties
Property NameValue
DescriptionChaperone-domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:489732..490931 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
IPR001623DnaJ_domain
Homology
[Close]
BLAST of NO12G01620 vs. NCBI_GenBank
Match: OWZ23498.1 (hypothetical protein PHMEG_0001628 [Phytophthora megakarya])

HSP 1 Score: 127.9 bits (320), Expect = 4.400e-26
Identity = 71/144 (49.31%), Postives = 95/144 (65.97%), Query Frame = 0 
Query:  102 QWQQIRALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKG 245
            Q   IRA HA+ ++EN +++GGL VAG+AL  +Y L+ Y  ++ +                           SS   + FY+G FE+KMTRREAALILGVRESAS +RI+ AHR++L+LNHPDTGGST+LA+KIN+AKE+LL G
Sbjct:   37 QDSSIRAFHASPQRENSLLIGGLGVAGAALSAKYVLQVYEAYKNR---------------------PKSEKTSSWKYRNFYDGPFEEKMTRREAALILGVRESASEERIRNAHRKLLILNHPDTGGSTFLATKINQAKEMLLGG 159
[Close]
BLAST of NO12G01620 vs. NCBI_GenBank
Match: GAX11090.1 (DnaJ homolog subfamily C member 19 [Fistulifera solaris])

HSP 1 Score: 127.5 bits (319), Expect = 5.800e-26
Identity = 85/146 (58.22%), Postives = 108/146 (73.97%), Query Frame = 0 
Query:  111 ATRRKENIMVGGLVVAGSALVLQYGLKAYNQWQA---KKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAK--------RFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGK 246
            A  +   I++G   V+ ++     G+KAYN+W+A   ++        XXXXXXXXXXXXXXXX   ++FAK        ++YEGGFE++MTRREAALILGVRES+SP RIKEAHR++L+LNHPDTGGSTY+A K+NEAKELLLKGK
Sbjct:   76 ANEKAVAIILGLGAVSAASYAASSGIKAYNEWKASLPEEPPVIEKEEXXXXXXXXXXXXXXXXDRENIFAKWFGAGVGAKYYEGGFEEEMTRREAALILGVRESSSPARIKEAHRKLLVLNHPDTGGSTYIAGKLNEAKELLLKGK 221
[Close]
BLAST of NO12G01620 vs. NCBI_GenBank
Match: POM68053.1 (DnaJ like subfamily C member 19 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 126.3 bits (316), Expect = 1.300e-25
Identity = 70/147 (47.62%), Postives = 96/147 (65.31%), Query Frame = 0 
Query:   99 STTQWQQIRALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKG 245
            S  +   IR+ HA+ ++EN +++GGL VAG+AL  +Y L+ Y  ++ +                           SS   + FY+G FE+KMTRREAALILGVRESAS +RI+ AHR++L+LNHPDTGGST+LA+KIN+AKE+LL G
Sbjct:   23 SDRECPSIRSFHASPQRENSLLIGGLGVAGAALSAKYVLQVYEAYKNR---------------------PKSEKSSSWKYRNFYDGPFEEKMTRREAALILGVRESASEERIRNAHRKLLILNHPDTGGSTFLATKINQAKEMLLGG 148
[Close]
BLAST of NO12G01620 vs. NCBI_GenBank
Match: CCA19955.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 124.8 bits (312), Expect = 3.800e-25
Identity = 71/163 (43.56%), Postives = 104/163 (63.80%), Query Frame = 0 
Query:   83 SSTYSLSSRSSVNRSFSTTQWQQIRALHATRRKENI-MVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKG 245
            S+    S +S ++ S+ +      R +H TR+++++ ++GGL +A SA+ ++Y +KAY  ++ +                            S   K FYEG FE++MTRREAALILGVRE+ASP+RI+ AHR++L+LNHPDTGGST++ASKINEAK+LLL G
Sbjct:   17 STALETSRKSQMHPSYISA-----RHIHMTRQQDSVLLLGGLGIAASAMGIKYVIKAYEAYKLRPKSPSL----------------------SWNYKSFYEGPFEERMTRREAALILGVRENASPKRIQNAHRQLLILNHPDTGGSTFIASKINEAKQLLLSG 152
[Close]
BLAST of NO12G01620 vs. NCBI_GenBank
Match: XP_009527166.1 (hypothetical protein PHYSODRAFT_498997 [Phytophthora sojae] >EGZ18108.1 hypothetical protein PHYSODRAFT_498997 [Phytophthora sojae])

HSP 1 Score: 124.8 bits (312), Expect = 3.800e-25
Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = 0 
Query:  107 RALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKG 245
            RA HA+ ++EN ++V GL VAG+AL  +Y L+    W+A K                          SS   + FY+G FE+KMTRREAALILGVRESAS +RI+ AHR++L+LNHPDTGGST+LA+KIN+AKE+LL G
Sbjct:   42 RAFHASAQRENTVLVAGLGVAGAALGAKYALQV---WEAYK-----------------NRPKSEKAASSWKYRNFYDGPFEEKMTRREAALILGVRESASEERIRNAHRKLLILNHPDTGGSTFLATKINQAKEMLLGG 160
[Close]
BLAST of NO12G01620 vs. NCBI_GenBank
Match: XP_008899242.1 (hypothetical protein PPTG_06942 [Phytophthora parasitica INRA-310] >ETI55482.1 hypothetical protein F443_01840 [Phytophthora parasitica P1569] >ETK95286.1 hypothetical protein L915_01765 [Phytophthora parasitica] >ETL48688.1 hypothetical protein L916_01731 [Phytophthora parasitica] >ETM01734.1 hypothetical protein L917_01693 [Phytophthora parasitica] >ETM54975.1 hypothetical protein L914_01744 [Phytophthora parasitica] >ETN15728.1 hypothetical protein PPTG_06942 [Phytophthora parasitica INRA-310] >ETO84215.1 hypothetical protein F444_01847 [Phytophthora parasitica P1976] >ETP25294.1 hypothetical protein F441_01803 [Phytophthora parasitica CJ01A1] >ETP53263.1 hypothetical protein F442_01781 [Phytophthora parasitica P10297])

HSP 1 Score: 124.8 bits (312), Expect = 3.800e-25
Identity = 76/157 (48.41%), Postives = 99/157 (63.06%), Query Frame = 0 
Query:   89 SSRSSVNRSFSTTQWQQIRALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKG 245
            SSR   N     TQ   +RA HA+ ++EN +++ GL VAG+AL  +Y L+    W+A K                          SS   + FY+G FE+KMTRREAALILGVRESAS +RI+ AHR++L+LNHPDTGGST+LA+KIN+AKE+LL G
Sbjct:   25 SSRDRQNAPL-PTQSLALRAFHASPQRENSVLIAGLGVAGAALSAKYVLQV---WEAYK------------------NRPKSEKVSSWKYRNFYDGPFEEKMTRREAALILGVRESASEERIRNAHRKLLILNHPDTGGSTFLATKINQAKEMLLGG 159
[Close]
BLAST of NO12G01620 vs. NCBI_GenBank
Match: OQS06127.1 (hypothetical protein THRCLA_20434 [Thraustotheca clavata])

HSP 1 Score: 124.8 bits (312), Expect = 3.800e-25
Identity = 93/156 (59.62%), Postives = 115/156 (73.72%), Query Frame = 0 
Query:   92 SSVNRSFSTTQ-WQQIRALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGK 246
            SS+ RS S  Q   Q R LHATR +++ ++VGG  VA +AL  +Y L++Y +     XXXXXXXXXXXXXXXXX          ++  + FY+G FEDKMTRREAALILGVRESASP RI+ AHR++L+ NHPDTGGST+L++KINEAKELLL GK
Sbjct:   12 SSLPRSLSALQVSSQHRYLHATRSQDSALIVGGAGVAVAALSAKYLLQSYQEXXXXXXXXXXXXXXXXXXXXXXSFFNF-----NMSYRNFYDGPFEDKMTRREAALILGVRESASPDRIRNAHRKLLIANHPDTGGSTFLSTKINEAKELLLGGK 162
[Close]
BLAST of NO12G01620 vs. NCBI_GenBank
Match: POM75464.1 (DnaJ like subfamily C member 19 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 124.8 bits (312), Expect = 3.800e-25
Identity = 69/147 (46.94%), Postives = 95/147 (64.63%), Query Frame = 0 
Query:   99 STTQWQQIRALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKG 245
            S  +   IR+ H + ++EN +++GGL VAG+AL  +Y L+ Y  ++ +                           SS   + FY+G FE+KMTRREAALILGVRESAS +RI+ AHR++L+LNHPDTGGST+LA+KIN+AKE+LL G
Sbjct:   23 SDRECPSIRSFHVSPQRENSLLIGGLGVAGAALSAKYVLQVYEAYKNR---------------------PKSEKSSSWKYRNFYDGPFEEKMTRREAALILGVRESASEERIRNAHRKLLILNHPDTGGSTFLATKINQAKEMLLGG 148
[Close]
BLAST of NO12G01620 vs. NCBI_GenBank
Match: KUF80111.1 (DnaJ subfamily C member 15 [Phytophthora nicotianae] >KUG01068.1 DnaJ subfamily C member 15 [Phytophthora nicotianae])

HSP 1 Score: 124.0 bits (310), Expect = 6.400e-25
Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 0 
Query:   89 SSRSSVNRSFSTTQWQQIRALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKG 245
            SSR   N     TQ   +RA HA+ ++EN +++ GL VAG+AL  +Y L+    W+A K                          SS   + FY+G FE+KMTRREAALILGVRESAS +RI+ AHR++L+LNHPDTGGST++A+KIN+AKE+LL G
Sbjct:   25 SSRDRQNAPL-PTQSLALRAFHASPQRENSVLIAGLGVAGAALSAKYVLQV---WEAYK------------------NRPKSEKVSSWKYRNFYDGPFEEKMTRREAALILGVRESASEERIRNAHRKLLILNHPDTGGSTFMATKINQAKEMLLGG 159
[Close]
BLAST of NO12G01620 vs. NCBI_GenBank
Match: OEU22464.1 (hypothetical protein FRACYDRAFT_267288 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 117.5 bits (293), Expect = 6.000e-23
Identity = 53/68 (77.94%), Postives = 64/68 (94.12%), Query Frame = 0 
Query:  179 RFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGKT 247
            ++Y+GGFED MTRREAALILGVRES+SP R+K+AHR +L+LNHPDTGGST+LA K+NEAKELLLKGK+
Sbjct:  235 KYYDGGFEDTMTRREAALILGVRESSSPARVKDAHRNLLILNHPDTGGSTFLAGKLNEAKELLLKGKS 302
The following BLAST results are available for this feature:
BLAST of NO12G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OWZ23498.14.400e-2649.31hypothetical protein PHMEG_0001628 [Phytophthora m... [more]
GAX11090.15.800e-2658.22DnaJ homolog subfamily C member 19 [Fistulifera so... [more]
POM68053.11.300e-2547.62DnaJ like subfamily C member 19 [Phytophthora palm... [more]
CCA19955.13.800e-2543.56conserved hypothetical protein [Albugo laibachii N... [more]
XP_009527166.13.800e-2551.08hypothetical protein PHYSODRAFT_498997 [Phytophtho... [more]
XP_008899242.13.800e-2548.41hypothetical protein PPTG_06942 [Phytophthora para... [more]
OQS06127.13.800e-2559.62hypothetical protein THRCLA_20434 [Thraustotheca c... [more]
POM75464.13.800e-2546.94DnaJ like subfamily C member 19 [Phytophthora palm... [more]
KUF80111.16.400e-2547.77DnaJ subfamily C member 15 [Phytophthora nicotiana... [more]
OEU22464.16.000e-2377.94hypothetical protein FRACYDRAFT_267288 [Fragilario... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010080NSK010080Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01620.1NO12G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671412gene_5319Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100054g20gene4646Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01620.1NO12G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01620 ID=NO12G01620|Name=NO12G01620|organism=Nannochloropsis oceanica|type=gene|length=1200bp
ATGGCAGCAGCCTTGCGTAGAATGGCGTTTGTGACTGGGAGCAGTAGAAG
TCGGGGTCCGGTGGGCGGGAGTAGCAGCGCATTGGCGTGGTGCTCACCAC
ATGAACGAGGGATGATGATGAAAGGCGACTGTTCTCGCTACCTGTCCTCC
CCGCCGCGGCCCTCCCTACCCAGCTTAAGCAACACGGACGACGAAGATGG
CAAACAGACTCAAAGgttcgtgtggaaatggcgtgcgggcgacggggtat
tctcggtagtatgggaatgtggctcgtgtttacttgctctcccttttccc
tcccactagACGACGGCAATGGCGTGAGTTGGGAGGCCTCTCTAGCACGT
ACAGTCTGAGTAGTCGCAGCAGCGTGAATCGCTCTTTTTCCACCACGCAA
TGGCAACAGATCCGTGCCTTGCATGCGACGCGGAGGAAAGAAAACATCAT
GGTTGGGGGCTTGGTCGTAGCGGGCAGCGCGCTGGTGTTGCAGTACGGAC
TGAAGgcgagtacctagagaacgggagacacgcgcagaaatagcacgaca
catagtatgtgggtccatcaactcactttgtcaatcaactcacagGCTTA
TAACCAGTGGCAAGCGAAGAAGGCCGCTGAAACCGCAGCAGGGGGCGGGA
TGGGCGCCGCCGAGGGAGGGAGTGGAGGGGGAGGGCTGACCAGCGGCATG
AGCTCTCTCTTTGCCAAGCGCTTTTATGAGGGCGGATTTGAAGATAAAAT
GACGCGGCGTGAGGCGGCTTTAATTTTGGGGGTCAGgtaagcccttgcat
agatagtgggtgtgcgggagaaggagaagaagaaactgtctgccctgtag
ttggcttatgctttgctcaatatctttttctccaaccacatccccccctc
cgacacaaattcagGGAAAGCGCATCGCCGCAGCGGATAAAAGAGGCACA
CCGGCGAATTCTCATGTTGAACCACCCCGACACGGGAGGGTCCACGTACC
TCGCGTCCAAGATCAACGAGgtgagaaggacggatggaggaaattggaag
gagaagagatgaatgcgtgtgaagagaaggcggtttgtatgtttaggggc
gtagagcttatccgctggtgggcaagtttctcacgagtttaaatttacac
ctccctacacaatttagGCCAAGGAACTGCTCCTCAAGGGCAAGACGTAA
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protein sequence of NO12G01620.1

>NO12G01620.1-protein ID=NO12G01620.1-protein|Name=NO12G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MAAALRRMAFVTGSSRSRGPVGGSSSALAWCSPHERGMMMKGDCSRYLSS
PPRPSLPSLSNTDDEDGKQTQRRRQWRELGGLSSTYSLSSRSSVNRSFST
TQWQQIRALHATRRKENIMVGGLVVAGSALVLQYGLKAYNQWQAKKAAET
AAGGGMGAAEGGSGGGGLTSGMSSLFAKRFYEGGFEDKMTRREAALILGV
RESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGKT*
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Synonyms
Publications