NO12G01620.1, NO12G01620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01620.1
Unique NameNO12G01620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length741
Alignment locationchr12:489732..490931 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:489732..490931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G01620.1 vs.
Match: XP_005856115.1 (chaperone -domain containing protein [Nannochloropsis gaditana CCMP526]; EKU20251.1 chaperone -domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 234.6 bits (597), Expect = 3.400e-58
Identity = 138/203 (67.98%), Postives = 153/203 (75.37%), Query Frame = 0
Query:   44 CSRYLSSPPRPSLPSLSNTDDEDGKQTQR-RRQWRELGGLSSTYSLSSRSSVNRSFSTTQWQQIRALHATRRKENIMVGGLVVAGSALVLQYGLKAYNQWQAKKAAETAAGGGMGAAEGGSGGGGLTSGMSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGK 246
            C  +LSS      P   +TD +  K+++  +R+W E   L  T S       +R  S  QWQQIRALHATRR+EN++VGGLVVAG AL LQYGL+AY QWQAKKAAE A     G   GG  GGG + GMSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKG+
Sbjct:   32 CGSWLSSLTSAIQPPSLSTDAQGEKRSKGIQRRW-ESRRLVRTMSHGGAGEDSRLMS--QWQQIRALHATRRQENLVVGGLVVAGGALALQYGLRAYKQWQAKKAAEGAEDKADGGKSGG--GGGFSGGMSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGR 229          
The following BLAST results are available for this feature:
BLAST of NO12G01620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856115.13.400e-5867.98chaperone -domain containing protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01620NO12G01620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01620.1NO12G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01620.1.cds1NO12G01620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01620.1.cds2NO12G01620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01620.1.cds3NO12G01620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01620.1.cds4NO12G01620.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01620.1.cds5NO12G01620.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01620.1 ID=NO12G01620.1|Name=NO12G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
ATGGCAGCAGCCTTGCGTAGAATGGCGTTTGTGACTGGGAGCAGTAGAAG
TCGGGGTCCGGTGGGCGGGAGTAGCAGCGCATTGGCGTGGTGCTCACCAC
ATGAACGAGGGATGATGATGAAAGGCGACTGTTCTCGCTACCTGTCCTCC
CCGCCGCGGCCCTCCCTACCCAGCTTAAGCAACACGGACGACGAAGATGG
CAAACAGACTCAAAGACGACGGCAATGGCGTGAGTTGGGAGGCCTCTCTA
GCACGTACAGTCTGAGTAGTCGCAGCAGCGTGAATCGCTCTTTTTCCACC
ACGCAATGGCAACAGATCCGTGCCTTGCATGCGACGCGGAGGAAAGAAAA
CATCATGGTTGGGGGCTTGGTCGTAGCGGGCAGCGCGCTGGTGTTGCAGT
ACGGACTGAAGGCTTATAACCAGTGGCAAGCGAAGAAGGCCGCTGAAACC
GCAGCAGGGGGCGGGATGGGCGCCGCCGAGGGAGGGAGTGGAGGGGGAGG
GCTGACCAGCGGCATGAGCTCTCTCTTTGCCAAGCGCTTTTATGAGGGCG
GATTTGAAGATAAAATGACGCGGCGTGAGGCGGCTTTAATTTTGGGGGTC
AGGGAAAGCGCATCGCCGCAGCGGATAAAAGAGGCACACCGGCGAATTCT
CATGTTGAACCACCCCGACACGGGAGGGTCCACGTACCTCGCGTCCAAGA
TCAACGAGGCCAAGGAACTGCTCCTCAAGGGCAAGACGTAA
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protein sequence of NO12G01620.1

>NO12G01620.1-protein ID=NO12G01620.1-protein|Name=NO12G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MAAALRRMAFVTGSSRSRGPVGGSSSALAWCSPHERGMMMKGDCSRYLSS
PPRPSLPSLSNTDDEDGKQTQRRRQWRELGGLSSTYSLSSRSSVNRSFST
TQWQQIRALHATRRKENIMVGGLVVAGSALVLQYGLKAYNQWQAKKAAET
AAGGGMGAAEGGSGGGGLTSGMSSLFAKRFYEGGFEDKMTRREAALILGV
RESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGKT*
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mRNA from alignment at chr12:489732..490931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01620.1 ID=NO12G01620.1|Name=NO12G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp|location=Sequence derived from alignment at chr12:489732..490931- (Nannochloropsis oceanica)
ATGGCAGCAGCCTTGCGTAGAATGGCGTTTGTGACTGGGAGCAGTAGAAG TCGGGGTCCGGTGGGCGGGAGTAGCAGCGCATTGGCGTGGTGCTCACCAC ATGAACGAGGGATGATGATGAAAGGCGACTGTTCTCGCTACCTGTCCTCC CCGCCGCGGCCCTCCCTACCCAGCTTAAGCAACACGGACGACGAAGATGG CAAACAGACTCAAAGGTTCGTGTGGAAATGGCGTGCGGGCGACGGGGTAT TCTCGGTAGTATGGGAATGTGGCTCGTGTTTACTTGCTCTCCCTTTTCCC TCCCACTAGACGACGGCAATGGCGTGAGTTGGGAGGCCTCTCTAGCACGT ACAGTCTGAGTAGTCGCAGCAGCGTGAATCGCTCTTTTTCCACCACGCAA TGGCAACAGATCCGTGCCTTGCATGCGACGCGGAGGAAAGAAAACATCAT GGTTGGGGGCTTGGTCGTAGCGGGCAGCGCGCTGGTGTTGCAGTACGGAC TGAAGGCGAGTACCTAGAGAACGGGAGACACGCGCAGAAATAGCACGACA CATAGTATGTGGGTCCATCAACTCACTTTGTCAATCAACTCACAGGCTTA TAACCAGTGGCAAGCGAAGAAGGCCGCTGAAACCGCAGCAGGGGGCGGGA TGGGCGCCGCCGAGGGAGGGAGTGGAGGGGGAGGGCTGACCAGCGGCATG AGCTCTCTCTTTGCCAAGCGCTTTTATGAGGGCGGATTTGAAGATAAAAT GACGCGGCGTGAGGCGGCTTTAATTTTGGGGGTCAGGTAAGCCCTTGCAT AGATAGTGGGTGTGCGGGAGAAGGAGAAGAAGAAACTGTCTGCCCTGTAG TTGGCTTATGCTTTGCTCAATATCTTTTTCTCCAACCACATCCCCCCCTC CGACACAAATTCAGGGAAAGCGCATCGCCGCAGCGGATAAAAGAGGCACA CCGGCGAATTCTCATGTTGAACCACCCCGACACGGGAGGGTCCACGTACC TCGCGTCCAAGATCAACGAGGTGAGAAGGACGGATGGAGGAAATTGGAAG GAGAAGAGATGAATGCGTGTGAAGAGAAGGCGGTTTGTATGTTTAGGGGC GTAGAGCTTATCCGCTGGTGGGCAAGTTTCTCACGAGTTTAAATTTACAC CTCCCTACACAATTTAGGCCAAGGAACTGCTCCTCAAGGGCAAGACGTAA
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Coding sequence (CDS) from alignment at chr12:489732..490931-

>NO12G01620.1 ID=NO12G01620.1|Name=NO12G01620.1|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at chr12:489732..490931- (Nannochloropsis oceanica)
ATGGCAGCAGCCTTGCGTAGAATGGCGTTTGTGACTGGGAGCAGTAGAAG
TCGGGGTCCGGTGGGCGGGAGTAGCAGCGCATTGGCGTGGTGCTCACCAC
ATGAACGAGGGATGATGATGAAAGGCGACTGTTCTCGCTACCTGTCCTCC
CCGCCGCGGCCCTCCCTACCCAGCTTAAGCAACACGGACGACGAAGATGG
CAAACAGACTCAAAGACGACGGCAATGGCGTGAGTTGGGAGGCCTCTCTA
GCACGTACAGTCTGAGTAGTCGCAGCAGCGTGAATCGCTCTTTTTCCACC
ACGCAATGGCAACAGATCCGTGCCTTGCATGCGACGCGGAGGAAAGAAAA
CATCATGGTTGGGGGCTTGGTCGTAGCGGGCAGCGCGCTGGTGTTGCAGT
ACGGACTGAAGGCTTATAACCAGTGGCAAGCGAAGAAGGCCGCTGAAACC
GCAGCAGGGGGCGGGATGGGCGCCGCCGAGGGAGGGAGTGGAGGGGGAGG
GCTGACCAGCGGCATGAGCTCTCTCTTTGCCAAGCGCTTTTATGAGGGCG
GATTTGAAGATAAAATGACGCGGCGTGAGGCGGCTTTAATTTTGGGGGTC
AGGGAAAGCGCATCGCCGCAGCGGATAAAAGAGGCACACCGGCGAATTCT
CATGTTGAACCACCCCGACACGGGAGGGTCCACGTACCTCGCGTCCAAGA
TCAACGAGGCCAAGGAACTGCTCCTCAAGGGCAAGACGTAA
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Synonyms
Publications