NO12G01620, NO12G01620 (gene) Nannochloropsis oceanica

Overview
NameNO12G01620
Unique NameNO12G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1200
Alignment locationchr12:489732..490931 -

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Properties
Property NameValue
DescriptionChaperone-domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:489732..490931 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
IPR001623DnaJ_domain
Homology
BLAST of NO12G01620 vs. NCBI_GenBank
Match: XP_005856115.1 (chaperone -domain containing protein [Nannochloropsis gaditana CCMP526] >EKU20251.1 chaperone -domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 203.0 bits (515), Expect = 1.100e-48
Identity = 143/203 (70.44%), Postives = 155/203 (76.35%), Query Frame = 0
Query:   44 CSRYLSSPPRPSLPXXXXXXXXXXKQTQR-RRQWRELGGLSSTYSLSSRSSVNRSFSTTQWQQIRALHATRRKENIMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGK 246
            C  +LSS      P          K+++  +R+W E   L  T S       +R  S  QWQQIRALHATRR+EN++VGGLVVAG AL LQYGL+AY QWQAKK    XXXXXXXXXXXXXXXXXXXXXX   FAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKG+
Sbjct:   32 CGSWLSSLTSAIQPPSLSTDAQGEKRSKGIQRRW-ESRRLVRTMSHGGAGEDSRLMS--QWQQIRALHATRRQENLVVGGLVVAGGALALQYGLRAYKQWQAKK--AAXXXXXXXXXXXXXXXXXXXXXXXXXFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGR 229          
BLAST of NO12G01620 vs. NCBI_GenBank
Match: XP_009841251.1 (hypothetical protein H257_14986 [Aphanomyces astaci] >ETV69394.1 hypothetical protein H257_14986 [Aphanomyces astaci])

HSP 1 Score: 137.9 bits (346), Expect = 4.300e-29
Identity = 81/146 (55.48%), Postives = 99/146 (67.81%), Query Frame = 0
Query:  104 QQIRALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLF---AKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGK 246
            QQ R+LHATR ++N ++VG L VA +AL  +Y L+AY  +QAKK                          SS+F    + FY+G FEDKMTRREAALILGVRESASP RI+ AHR++L+ NHPDTGGST+L+SKINEAKELLL GK
Sbjct:   33 QQRRSLHATRSQDNALVVGSLGVAAAALGGKYLLEAYEGYQAKK--------------ASSPSGTGASSSSSVFNMSYRNFYDGPFEDKMTRREAALILGVRESASPDRIRNAHRKLLIANHPDTGGSTFLSSKINEAKELLLGGK 164          
BLAST of NO12G01620 vs. NCBI_GenBank
Match: XP_012196083.1 (hypothetical protein SPRG_02142 [Saprolegnia parasitica CBS 223.65] >KDO33334.1 hypothetical protein SPRG_02142 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 135.2 bits (339), Expect = 2.800e-28
Identity = 76/161 (47.20%), Postives = 105/161 (65.22%), Query Frame = 0
Query:   88 LSSRSSVNRSFSTTQW--QQIRALHATRRKENI-MVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGK 246
            L   S++ RS +  Q   QQ R LHATR+++++ +VGG  VA +AL  +Y L++Y +++A K                           ++  + FY+G FEDKMTRREAALILGVRE+ASP RI+ AHR++L+ NHPDTGGST+L++KINEAKE+LL GK
Sbjct:   11 LRRSSALPRSLAPIQLVPQQARYLHATRKQDSLAIVGGAGVAVAALSAKYLLQSYQEYKANKAAAATEAPAGKNEGKAAASERGSFFNFNMSYRNFYDGPFEDKMTRREAALILGVRENASPDRIRNAHRKLLISNHPDTGGSTFLSTKINEAKEMLLNGK 171          
BLAST of NO12G01620 vs. NCBI_GenBank
Match: OQR91727.1 (hypothetical protein ACHHYP_04444 [Achlya hypogyna])

HSP 1 Score: 134.8 bits (338), Expect = 3.600e-28
Identity = 75/143 (52.45%), Postives = 101/143 (70.63%), Query Frame = 0
Query:  104 QQIRALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGK 246
            QQ R LHATR +++ ++VGG  VA +A+ ++Y L++Y Q+QA K    XXXX                   ++  + FY+G FEDKMTRREAALILGVRE+A+P RI+ AHR++L+ NHPDTGGST+L++KINEAKE+LL GK
Sbjct:   24 QQSRYLHATRPQDSALIVGGAGVAVAAMSVKYLLQSYQQYQAAKAAAPXXXXKGKSDAKGTSSERGSFFNFNMSYRNFYDGPFEDKMTRREAALILGVRENANPDRIRNAHRKLLIANHPDTGGSTFLSTKINEAKEMLLNGK 166          
BLAST of NO12G01620 vs. NCBI_GenBank
Match: XP_008874563.1 (hypothetical protein H310_10090 [Aphanomyces invadans] >ETV96786.1 hypothetical protein H310_10090 [Aphanomyces invadans])

HSP 1 Score: 132.5 bits (332), Expect = 1.800e-27
Identity = 78/146 (53.42%), Postives = 98/146 (67.12%), Query Frame = 0
Query:  104 QQIRALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLF---AKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGK 246
            QQ R+LHATRR+EN I+VG L VA +AL  +Y L+AY  ++A K                          SS+F    + FY+G FE+KMTRREAALILGVRESAS  RI+ AHR++L+ NHPDTGGST++++KINEAKELLL GK
Sbjct:   51 QQRRSLHATRRQENAIVVGSLGVAAAALGGKYLLEAYEGYKANK---------------AASGTDKSSASSSMFNMSYRNFYDGPFEEKMTRREAALILGVRESASADRIRNAHRKLLIANHPDTGGSTFISTKINEAKELLLGGK 181          
BLAST of NO12G01620 vs. NCBI_GenBank
Match: CBJ29706.1 (Mitochondrial import inner membrane translocase TIM14 homolog [Ectocarpus siliculosus])

HSP 1 Score: 131.7 bits (330), Expect = 3.100e-27
Identity = 93/184 (50.54%), Postives = 118/184 (64.13%), Query Frame = 0
Query:   79 LGGLSSTYSLSSRSSVNRSFSTTQ--WQQIRALHATRRKE-NIMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXS--------------SLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGK 246
            LG L +T S +  S  N   +  Q    Q R +H +RR E ++++ G  +A SA+V +YGL  Y ++QA              XXXXXXXXXXXXXX                 F KR Y+GGFE+KMTR+EAALILGVRESA+ QRIK++HRRILM+NHPD GGS Y+A+KINEAKE+LLKG+
Sbjct:   25 LGRLGATSSSNRESGANDRHARAQALVSQARDIHVSRRNESSVLITGAGIAVSAMVARYGLMEYQKYQAAHPEITEEADSGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGAFGKRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGR 208          
BLAST of NO12G01620 vs. NCBI_GenBank
Match: GAX96430.1 (Hypothetical protein PINS_004317 [Pythium insidiosum])

HSP 1 Score: 130.2 bits (326), Expect = 8.900e-27
Identity = 76/160 (47.50%), Postives = 102/160 (63.75%), Query Frame = 0
Query:   87 SLSSRSSVNRSFSTTQWQQIRALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGK 246
            S   + +  RS    Q   IR LH+T ++E+ I++ GL VAG+A+  +Y L+A+  +QA+                           SS   + FY+G FEDKMTRREAALILGVRESAS +RI+ AHR++L+LNHPDTGGST+LA+KIN+AKELLL G+
Sbjct:  145 SRKDQETTERSPLLVQSSAIRQLHSTPQRESAILLAGLGVAGAAMGAKYLLQAWEAYQAR---------------------PKSEKVSSWKYRNFYDGPFEDKMTRREAALILGVRESASEERIRNAHRKLLILNHPDTGGSTFLATKINQAKELLLSGQ 283          
BLAST of NO12G01620 vs. NCBI_GenBank
Match: CCI48484.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 129.8 bits (325), Expect = 1.200e-26
Identity = 70/139 (50.36%), Postives = 94/139 (67.63%), Query Frame = 0
Query:  107 RALHATRRKENI-MVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKG 245
            R +H TR+++++ ++GGL +A SA+ ++Y +KAY  ++ +                            S   K FYEG FE++MTRREAALILGVRESASP+RI+ AHR++L+LNHPDTGGSTYLASKINEAK+LLL G
Sbjct:   35 RHIHMTRQQDSVFLLGGLGIAASAMGIKYVIKAYEAYKLRPKTPSL----------------------SWNYKSFYEGPFEERMTRREAALILGVRESASPKRIQNAHRKLLILNHPDTGGSTYLASKINEAKQLLLSG 151          
BLAST of NO12G01620 vs. NCBI_GenBank
Match: XP_024575323.1 (mitochondrial import inner membrane translocase subunit tim14-1-like [Plasmopara halstedii] >CEG38954.1 mitochondrial import inner membrane translocase subunit tim14-1-like [Plasmopara halstedii])

HSP 1 Score: 129.8 bits (325), Expect = 1.200e-26
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 0
Query:  101 TQWQQIRALHATRRKEN-IMVGGLVVAGSALVLQYGLKAYNQWQAKKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKG 245
            TQ   +RA HA+ ++EN  ++ GL VAG+AL  +Y L+ +N ++++                           SS   + FY+G FE+KMTRREAALILGVRESAS +RI+ AHR++L+LNHPDTGGST+LA+KIN+AKELLL G
Sbjct:   33 TQTLSLRAFHASPQRENTALIAGLGVAGAALSAKYALQVWNAYKSR---------------------PKSEQISSWKYRNFYDGPFEEKMTRREAALILGVRESASEERIRNAHRKLLILNHPDTGGSTFLATKINQAKELLLNG 156          
BLAST of NO12G01620 vs. NCBI_GenBank
Match: GAX26886.1 (DnaJ homolog subfamily C member 19 [Fistulifera solaris])

HSP 1 Score: 127.9 bits (320), Expect = 4.400e-26
Identity = 88/154 (57.14%), Postives = 113/154 (73.38%), Query Frame = 0
Query:  106 IRALHATRRKEN---IMVGGLVVAGSALVLQYGLKAYNQWQA---KKXXXXXXXXXXXXXXXXXXXXXXXXXXSSLFAK--------RFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGK 246
            I + H++   E    I++G   V+ ++     G+KAYN+W+A   ++      XXXXXXXXXXXXXXXXX    ++FAK        ++YEGGFE++MTRREAALILGVRES+SP RIKEAHR++L+LNHPDTGGSTY+A K+NEAKELLLKGK
Sbjct:   71 IASFHSSSANEKAVAIILGLGAVSAASYAAASGIKAYNEWKASLPEEPPEIEKXXXXXXXXXXXXXXXXXGDRENIFAKWFGASVGAKYYEGGFEEEMTRREAALILGVRESSSPARIKEAHRKLLVLNHPDTGGSTYIAGKLNEAKELLLKGK 224          
The following BLAST results are available for this feature:
BLAST of NO12G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856115.11.100e-4870.44chaperone -domain containing protein [Nannochlorop... [more]
XP_009841251.14.300e-2955.48hypothetical protein H257_14986 [Aphanomyces astac... [more]
XP_012196083.12.800e-2847.20hypothetical protein SPRG_02142 [Saprolegnia paras... [more]
OQR91727.13.600e-2852.45hypothetical protein ACHHYP_04444 [Achlya hypogyna... [more]
XP_008874563.11.800e-2753.42hypothetical protein H310_10090 [Aphanomyces invad... [more]
CBJ29706.13.100e-2750.54Mitochondrial import inner membrane translocase TI... [more]
GAX96430.18.900e-2747.50Hypothetical protein PINS_004317 [Pythium insidios... [more]
CCI48484.11.200e-2650.36unnamed protein product [Albugo candida][more]
XP_024575323.11.200e-2648.97mitochondrial import inner membrane translocase su... [more]
GAX26886.14.400e-2657.14DnaJ homolog subfamily C member 19 [Fistulifera so... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010080NSK010080Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01620.1NO12G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671412gene_5319Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100054g20gene4646Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01620.1NO12G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01620 ID=NO12G01620|Name=NO12G01620|organism=Nannochloropsis oceanica|type=gene|length=1200bp
ATGGCAGCAGCCTTGCGTAGAATGGCGTTTGTGACTGGGAGCAGTAGAAG
TCGGGGTCCGGTGGGCGGGAGTAGCAGCGCATTGGCGTGGTGCTCACCAC
ATGAACGAGGGATGATGATGAAAGGCGACTGTTCTCGCTACCTGTCCTCC
CCGCCGCGGCCCTCCCTACCCAGCTTAAGCAACACGGACGACGAAGATGG
CAAACAGACTCAAAGgttcgtgtggaaatggcgtgcgggcgacggggtat
tctcggtagtatgggaatgtggctcgtgtttacttgctctcccttttccc
tcccactagACGACGGCAATGGCGTGAGTTGGGAGGCCTCTCTAGCACGT
ACAGTCTGAGTAGTCGCAGCAGCGTGAATCGCTCTTTTTCCACCACGCAA
TGGCAACAGATCCGTGCCTTGCATGCGACGCGGAGGAAAGAAAACATCAT
GGTTGGGGGCTTGGTCGTAGCGGGCAGCGCGCTGGTGTTGCAGTACGGAC
TGAAGgcgagtacctagagaacgggagacacgcgcagaaatagcacgaca
catagtatgtgggtccatcaactcactttgtcaatcaactcacagGCTTA
TAACCAGTGGCAAGCGAAGAAGGCCGCTGAAACCGCAGCAGGGGGCGGGA
TGGGCGCCGCCGAGGGAGGGAGTGGAGGGGGAGGGCTGACCAGCGGCATG
AGCTCTCTCTTTGCCAAGCGCTTTTATGAGGGCGGATTTGAAGATAAAAT
GACGCGGCGTGAGGCGGCTTTAATTTTGGGGGTCAGgtaagcccttgcat
agatagtgggtgtgcgggagaaggagaagaagaaactgtctgccctgtag
ttggcttatgctttgctcaatatctttttctccaaccacatccccccctc
cgacacaaattcagGGAAAGCGCATCGCCGCAGCGGATAAAAGAGGCACA
CCGGCGAATTCTCATGTTGAACCACCCCGACACGGGAGGGTCCACGTACC
TCGCGTCCAAGATCAACGAGgtgagaaggacggatggaggaaattggaag
gagaagagatgaatgcgtgtgaagagaaggcggtttgtatgtttaggggc
gtagagcttatccgctggtgggcaagtttctcacgagtttaaatttacac
ctccctacacaatttagGCCAAGGAACTGCTCCTCAAGGGCAAGACGTAA
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protein sequence of NO12G01620.1

>NO12G01620.1-protein ID=NO12G01620.1-protein|Name=NO12G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MAAALRRMAFVTGSSRSRGPVGGSSSALAWCSPHERGMMMKGDCSRYLSS
PPRPSLPSLSNTDDEDGKQTQRRRQWRELGGLSSTYSLSSRSSVNRSFST
TQWQQIRALHATRRKENIMVGGLVVAGSALVLQYGLKAYNQWQAKKAAET
AAGGGMGAAEGGSGGGGLTSGMSSLFAKRFYEGGFEDKMTRREAALILGV
RESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGKT*
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Synonyms
Publications