NO12G01600, NO12G01600 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO12G01600 vs. NCBI_GenBank
Match: PID63640.1 (hypothetical protein CSB44_01380 [Gammaproteobacteria bacterium]) HSP 1 Score: 100.1 bits (248), Expect = 4.100e-18 Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 0 Query: 1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYR 91 +YGIR Y GS L H D + TH S I+NV Q+G+ WPL +HDHQ H+++++PGE +FYE +HG P YAN+FVHY+ Sbjct: 33 VYGIREYLRGSILKMHRDRVETHIASVILNVDQQGVRTPWPLFMHDHQFRTHAVLLEPGEMLFYEGARLLHGRPEPFDGERYANVFVHYK 122
BLAST of NO12G01600 vs. NCBI_GenBank
Match: PID63305.1 (proline hydroxylase, partial [Gammaproteobacteria bacterium]) HSP 1 Score: 97.4 bits (241), Expect = 2.600e-17 Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 0 Query: 1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYR 91 +YGIR Y GS L H D + TH S I+NV Q+G+ W L +HDHQ H+++++PGE +FYE +HG P YAN+FVHY+ Sbjct: 111 VYGIREYLRGSILKMHRDRVETHIASVILNVDQQGVRTPWSLFMHDHQFRTHAVLLEPGEMLFYEGARLLHGRSEPFDGERYANVFVHYK 200
BLAST of NO12G01600 vs. NCBI_GenBank
Match: WP_085759061.1 (hypothetical protein [Oceanicoccus sagamiensis] >ARN74895.1 hypothetical protein BST96_12680 [Oceanicoccus sagamiensis]) HSP 1 Score: 97.1 bits (240), Expect = 3.500e-17 Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 0 Query: 1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTEGW 96 +YG+R Y G+ L H D TH +SAIINV Q + ++WPL +DH G H I ++PGE +FYES HG TPL +ANLF+H +P GW Sbjct: 291 IYGVRSYKKGANLSMHVDRYRTHIISAIINVDQ-AVTKKWPLHAYDHFGRLHRIYLKPGEMIFYESARVPHGRPTPLNGKNFANLFIHAQPV-GW 383
BLAST of NO12G01600 vs. NCBI_GenBank
Match: WP_020560752.1 (hypothetical protein [Thiothrix flexilis]) HSP 1 Score: 95.1 bits (235), Expect = 1.300e-16 Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 0 Query: 1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRP 92 +YGIR Y G+ L H D I TH VS IINVAQ+ + ++W L I DH+G H + MQPG+ +FYES HG PL+ YAN+F H P Sbjct: 379 IYGIREYQRGATLKMHVDRIDTHQVSMIINVAQQ-VDQDWFLHIADHKGKIHKVTMQPGDVIFYESARLQHGRPEPLEGEYYANIFAHTAP 468
BLAST of NO12G01600 vs. NCBI_GenBank
Match: OEU14567.1 (hypothetical protein FRACYDRAFT_241115 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 95.1 bits (235), Expect = 1.300e-16 Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0 Query: 1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPL--KNG--TYANLFVHYRP 92 MYG+R+Y G+RL+ H D ++THAVS I+N+AQ+ + WP++I DH H + M+ G+ V+YES +H PL K G + NLF HYRP Sbjct: 400 MYGMRQYEQGARLLSHVDRLTTHAVSLIVNIAQDNLANPWPVEIFDHADRLHEVNMKAGDIVYYESAKNLHSRNRPLTCKEGGCHFVNLFTHYRP 494
BLAST of NO12G01600 vs. NCBI_GenBank
Match: OEU17997.1 (hypothetical protein FRACYDRAFT_238428 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 94.4 bits (233), Expect = 2.200e-16 Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 0 Query: 1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTEGW 96 +YGIR Y G+ L H D + S I+NVAQ+ + E+WPL+++D G +I M+PG+ + YES S IHG PLK YAN+F+H+ P EGW Sbjct: 213 LYGIREYTEGAVLSPHVDRVPL-VSSGIVNVAQD-VDEDWPLEVYDRNGHAVNITMKPGDMILYESHSLIHGRPFPLKGRYYANVFIHFEPFEGW 305
BLAST of NO12G01600 vs. NCBI_GenBank
Match: WP_007020737.1 (hypothetical protein [Neptuniibacter caesariensis] >EAR62427.1 hypothetical protein MED92_15358 [Oceanospirillum sp. MED92]) HSP 1 Score: 94.4 bits (233), Expect = 2.200e-16 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 0 Query: 1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHY 90 +YGIR Y G+ L H D ++TH VS I+N+ Q+ E+WPL I DH +H I MQPG+ + YE +HG TPLK +AN+FVHY Sbjct: 351 VYGIREYHQGAVLEMHRDRLNTHEVSLILNI-QQKTQEDWPLTIEDHFYRQHQITMQPGQMLLYEGCRLLHGRPTPLKGSIFANIFVHY 438
BLAST of NO12G01600 vs. NCBI_GenBank
Match: WP_011469744.1 (hypothetical protein [Saccharophagus degradans] >ABD82528.1 2OG-Fe(II) oxygenase [Saccharophagus degradans 2-40]) HSP 1 Score: 94.0 bits (232), Expect = 2.900e-16 Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 0 Query: 1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRP 92 +YGIR Y G++L H D + TH +SAIIN+AQ+ + E+WPL I D+ H I+++PGE VFYE +HG P ++AN+F H++P Sbjct: 387 VYGIREYHRGAKLKMHRDRLETHIISAIINIAQD-VDEDWPLVIEDNAYRVHHILLKPGEMVFYEGGRLLHGRPIPFNGDSFANIFCHFKP 476
BLAST of NO12G01600 vs. NCBI_GenBank
Match: XP_002295853.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64570.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 94.0 bits (232), Expect = 2.900e-16 Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 0 Query: 1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRP--TEGWYYK 99 +YG+R+Y AG+RL+ H D I+THA + + W ++++DH H + M+PG V+YES +HG TPL G YANLF HYRP WY K Sbjct: 349 LYGMRQYEAGARLLTHVDRINTHA---------GNLTQPWTVEVYDHADRLHEVQMEPGSIVYYESAKALHGRNTPLAGGYYANLFTHYRPIGDPEWYLK 439
BLAST of NO12G01600 vs. NCBI_GenBank
Match: WP_101343985.1 (proline hydroxylase [Colwellia echini]) HSP 1 Score: 94.0 bits (232), Expect = 2.900e-16 Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 0 Query: 1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRP 92 +YGIR Y G+ L H D I TH +S I+NV Q+ + ++WPL+I D+ +H ++++PGE +FYE HG TPLK +YAN+F H+ P Sbjct: 390 VYGIRVYFDGAVLKMHRDRIETHIISVILNVDQD-VKQDWPLEIEDNYYRKHQVMLKPGEMIFYEGARLSHGRPTPLKGNSYANIFCHFLP 479 The following BLAST results are available for this feature:
BLAST of NO12G01600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G01600 ID=NO12G01600|Name=NO12G01600|organism=Nannochloropsis oceanica|type=gene|length=306bpback to top protein sequence of NO12G01600.1 >NO12G01600.1-protein ID=NO12G01600.1-protein|Name=NO12G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bpback to top Synonyms
Publications
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