NO12G01600, NO12G01600 (gene) Nannochloropsis oceanica

Overview
NameNO12G01600
Unique NameNO12G01600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length306
Alignment locationchr12:487699..488004 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:487699..488004 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO12G01600 vs. NCBI_GenBank
Match: PID63640.1 (hypothetical protein CSB44_01380 [Gammaproteobacteria bacterium])

HSP 1 Score: 100.1 bits (248), Expect = 4.100e-18
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYR 91
            +YGIR Y  GS L  H D + TH  S I+NV Q+G+   WPL +HDHQ   H+++++PGE +FYE    +HG   P     YAN+FVHY+
Sbjct:   33 VYGIREYLRGSILKMHRDRVETHIASVILNVDQQGVRTPWPLFMHDHQFRTHAVLLEPGEMLFYEGARLLHGRPEPFDGERYANVFVHYK 122          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: PID63305.1 (proline hydroxylase, partial [Gammaproteobacteria bacterium])

HSP 1 Score: 97.4 bits (241), Expect = 2.600e-17
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYR 91
            +YGIR Y  GS L  H D + TH  S I+NV Q+G+   W L +HDHQ   H+++++PGE +FYE    +HG   P     YAN+FVHY+
Sbjct:  111 VYGIREYLRGSILKMHRDRVETHIASVILNVDQQGVRTPWSLFMHDHQFRTHAVLLEPGEMLFYEGARLLHGRSEPFDGERYANVFVHYK 200          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: WP_085759061.1 (hypothetical protein [Oceanicoccus sagamiensis] >ARN74895.1 hypothetical protein BST96_12680 [Oceanicoccus sagamiensis])

HSP 1 Score: 97.1 bits (240), Expect = 3.500e-17
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTEGW 96
            +YG+R Y  G+ L  H D   TH +SAIINV Q  + ++WPL  +DH G  H I ++PGE +FYES    HG  TPL    +ANLF+H +P  GW
Sbjct:  291 IYGVRSYKKGANLSMHVDRYRTHIISAIINVDQ-AVTKKWPLHAYDHFGRLHRIYLKPGEMIFYESARVPHGRPTPLNGKNFANLFIHAQPV-GW 383          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: WP_020560752.1 (hypothetical protein [Thiothrix flexilis])

HSP 1 Score: 95.1 bits (235), Expect = 1.300e-16
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRP 92
            +YGIR Y  G+ L  H D I TH VS IINVAQ+ + ++W L I DH+G  H + MQPG+ +FYES    HG   PL+   YAN+F H  P
Sbjct:  379 IYGIREYQRGATLKMHVDRIDTHQVSMIINVAQQ-VDQDWFLHIADHKGKIHKVTMQPGDVIFYESARLQHGRPEPLEGEYYANIFAHTAP 468          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: OEU14567.1 (hypothetical protein FRACYDRAFT_241115 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 95.1 bits (235), Expect = 1.300e-16
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPL--KNG--TYANLFVHYRP 92
            MYG+R+Y  G+RL+ H D ++THAVS I+N+AQ+ +   WP++I DH    H + M+ G+ V+YES   +H    PL  K G   + NLF HYRP
Sbjct:  400 MYGMRQYEQGARLLSHVDRLTTHAVSLIVNIAQDNLANPWPVEIFDHADRLHEVNMKAGDIVYYESAKNLHSRNRPLTCKEGGCHFVNLFTHYRP 494          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: OEU17997.1 (hypothetical protein FRACYDRAFT_238428 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 94.4 bits (233), Expect = 2.200e-16
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTEGW 96
            +YGIR Y  G+ L  H D +     S I+NVAQ+ + E+WPL+++D  G   +I M+PG+ + YES S IHG   PLK   YAN+F+H+ P EGW
Sbjct:  213 LYGIREYTEGAVLSPHVDRVPL-VSSGIVNVAQD-VDEDWPLEVYDRNGHAVNITMKPGDMILYESHSLIHGRPFPLKGRYYANVFIHFEPFEGW 305          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: WP_007020737.1 (hypothetical protein [Neptuniibacter caesariensis] >EAR62427.1 hypothetical protein MED92_15358 [Oceanospirillum sp. MED92])

HSP 1 Score: 94.4 bits (233), Expect = 2.200e-16
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHY 90
            +YGIR Y  G+ L  H D ++TH VS I+N+ Q+   E+WPL I DH   +H I MQPG+ + YE    +HG  TPLK   +AN+FVHY
Sbjct:  351 VYGIREYHQGAVLEMHRDRLNTHEVSLILNI-QQKTQEDWPLTIEDHFYRQHQITMQPGQMLLYEGCRLLHGRPTPLKGSIFANIFVHY 438          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: WP_011469744.1 (hypothetical protein [Saccharophagus degradans] >ABD82528.1 2OG-Fe(II) oxygenase [Saccharophagus degradans 2-40])

HSP 1 Score: 94.0 bits (232), Expect = 2.900e-16
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRP 92
            +YGIR Y  G++L  H D + TH +SAIIN+AQ+ + E+WPL I D+    H I+++PGE VFYE    +HG   P    ++AN+F H++P
Sbjct:  387 VYGIREYHRGAKLKMHRDRLETHIISAIINIAQD-VDEDWPLVIEDNAYRVHHILLKPGEMVFYEGGRLLHGRPIPFNGDSFANIFCHFKP 476          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: XP_002295853.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64570.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 94.0 bits (232), Expect = 2.900e-16
Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRP--TEGWYYK 99
            +YG+R+Y AG+RL+ H D I+THA           + + W ++++DH    H + M+PG  V+YES   +HG  TPL  G YANLF HYRP     WY K
Sbjct:  349 LYGMRQYEAGARLLTHVDRINTHA---------GNLTQPWTVEVYDHADRLHEVQMEPGSIVYYESAKALHGRNTPLAGGYYANLFTHYRPIGDPEWYLK 439          
BLAST of NO12G01600 vs. NCBI_GenBank
Match: WP_101343985.1 (proline hydroxylase [Colwellia echini])

HSP 1 Score: 94.0 bits (232), Expect = 2.900e-16
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 0
Query:    1 MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGVEHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRP 92
            +YGIR Y  G+ L  H D I TH +S I+NV Q+ + ++WPL+I D+   +H ++++PGE +FYE     HG  TPLK  +YAN+F H+ P
Sbjct:  390 VYGIRVYFDGAVLKMHRDRIETHIISVILNVDQD-VKQDWPLEIEDNYYRKHQVMLKPGEMIFYEGARLSHGRPTPLKGNSYANIFCHFLP 479          
The following BLAST results are available for this feature:
BLAST of NO12G01600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PID63640.14.100e-1846.67hypothetical protein CSB44_01380 [Gammaproteobacte... [more]
PID63305.12.600e-1745.56proline hydroxylase, partial [Gammaproteobacteria ... [more]
WP_085759061.13.500e-1747.37hypothetical protein [Oceanicoccus sagamiensis] >A... [more]
WP_020560752.11.300e-1649.45hypothetical protein [Thiothrix flexilis][more]
OEU14567.11.300e-1645.26hypothetical protein FRACYDRAFT_241115 [Fragilario... [more]
OEU17997.12.200e-1646.32hypothetical protein FRACYDRAFT_238428 [Fragilario... [more]
WP_007020737.12.200e-1648.31hypothetical protein [Neptuniibacter caesariensis]... [more]
WP_011469744.12.900e-1645.05hypothetical protein [Saccharophagus degradans] >A... [more]
XP_002295853.12.900e-1643.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
WP_101343985.12.900e-1645.05proline hydroxylase [Colwellia echini][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01600.1NO12G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01600.1NO12G01600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01600 ID=NO12G01600|Name=NO12G01600|organism=Nannochloropsis oceanica|type=gene|length=306bp
ATGTACGGCATCCGTCGCTACCCTGCCGGAAGCCGGCTAATGAAACACGG
TGACATGATCTCGACACACGCCGTCAGCGCCATTATAAATGTGGCTCAAG
AAGGGATACTTGAGGAATGGCCATTGCAAATCCACGACCATCAGGGAGTA
GAGCATTCGATTGTAATGCAGCCCGGAGAGGCGGTTTTCTACGAAAGCGT
GTCTTGCATTCATGGCCACGAGACGCCGTTGAAGAATGGGACGTACGCGA
ATTTGTTTGTGCATTACCGTCCAACGGAGGGGTGGTACTACAAGTACAAG
TACTGA
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protein sequence of NO12G01600.1

>NO12G01600.1-protein ID=NO12G01600.1-protein|Name=NO12G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MYGIRRYPAGSRLMKHGDMISTHAVSAIINVAQEGILEEWPLQIHDHQGV
EHSIVMQPGEAVFYESVSCIHGHETPLKNGTYANLFVHYRPTEGWYYKYK
Y*
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Synonyms
Publications