NO12G01550, NO12G01550 (gene) Nannochloropsis oceanica

Overview
NameNO12G01550
Unique NameNO12G01550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2524
Alignment locationchr12:473857..476380 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:473857..476380 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO12G01550 vs. NCBI_GenBank
Match: XP_005856110.1 (hypothetical protein NGA_0333000, partial [Nannochloropsis gaditana CCMP526] >EKU20246.1 hypothetical protein NGA_0333000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 85.5 bits (210), Expect = 3.600e-13
Identity = 92/315 (29.21%), Postives = 148/315 (46.98%), Query Frame = 0 
Query:   21 TNSTRTSCRRPLLRTRPLPPSPPPSPHRGTIVSTTNHFP---SATVSVTELQEVLGDYQHIKQQLARLRKQVFMTELKGLAEISALVSENGEEGFKSKRRPQHGV---NLVAKTQMKVGKEAEEAMVWMLKAEVEEMNQSLKQREEEHEEEKTHLQAYCIELEDHVATAMEQXXXXXXXXXXXXXXXXXXXXXXXQEIFRLQEQIEELAEALKTHERLTMAHNTEITKLRKGLLEEEAEKEEYKKRLENTKGLDEEMGRLRKALIQTEERV----AGMEEGAKHAKEKEMERRRVIREQRKVIENELMLEMERVE 326
            T +T   C R   R+R        +       S+ + FP       S  + Q+++ +Y+ + QQL   R +V   E K + E     +     G ++  R QH      + ++ + K G   E A     K + + M++ L+++EEEH+ EK  L+ YC +L+     A++                        QE FRLQ+QIEELA  L+   R+T   + EI  LR+ L   +A +E   ++   +  L EE+  LRK L Q    V    +G+ E A+ AK +   RRR +REQR++IE +L+LE+E +E
Sbjct:    1 TGATSQECEREDRRSRLXXXXXXXAACPTGSSSSKSDFPVDSPGHPSSNDAQDIVDNYRCVCQQLRAFRGRVLNHEEKAMVEEIGAEARATALGNRAIERHQHDEQEDTMRSRLRAKDGDIRERAQFSPCKEQDDVMDRFLRRQEEEHQYEKARLETYCGKLQRQARQALQAAKSAQRQALIAETDLEHECNSSRQENFRLQQQIEELARGLQAQRRVTAERDAEIISLRERLSMAQAREEALAQQATRSTALKEEVESLRKCLEQANGMVLFKKSGVSEEAERAKVE--ARRRHLREQRRLIEKDLLLEIETLE 313
[Close]
BLAST of NO12G01550 vs. NCBI_GenBank
Match: EWM25887.1 (hypothetical protein Naga_100054g18 [Nannochloropsis gaditana])

HSP 1 Score: 85.5 bits (210), Expect = 3.600e-13
Identity = 92/315 (29.21%), Postives = 148/315 (46.98%), Query Frame = 0 
Query:   21 TNSTRTSCRRPLLRTRPLPPSPPPSPHRGTIVSTTNHFP---SATVSVTELQEVLGDYQHIKQQLARLRKQVFMTELKGLAEISALVSENGEEGFKSKRRPQHGV---NLVAKTQMKVGKEAEEAMVWMLKAEVEEMNQSLKQREEEHEEEKTHLQAYCIELEDHVATAMEQXXXXXXXXXXXXXXXXXXXXXXXQEIFRLQEQIEELAEALKTHERLTMAHNTEITKLRKGLLEEEAEKEEYKKRLENTKGLDEEMGRLRKALIQTEERV----AGMEEGAKHAKEKEMERRRVIREQRKVIENELMLEMERVE 326
            T +T   C R   R+R        +       S+ + FP       S  + Q+++ +Y+ + QQL   R +V   E K + E     +     G ++  R QH      + ++ + K G   E A     K + + M++ L+++EEEH+ EK  L+ YC +L+     A++                        QE FRLQ+QIEELA  L+   R+T   + EI  LR+ L   +A +E   ++   +  L EE+  LRK L Q    V    +G+ E A+ AK +   RRR +REQR++IE +L+LE+E +E
Sbjct:    2 TGATSQECEREDRRSRLXXXXXXXAACPTGSSSSKSDFPVDSPGHPSSNDAQDIVDNYRCVCQQLRAFRGRVLNHEEKAMVEEIGAEARATALGNRAIERHQHDEQEDTMRSRLRAKDGDIRERAQFSPCKEQDDVMDRFLRRQEEEHQYEKARLETYCGKLQRQARQALQAAKSAQRQALIAETDLEHECNSSRQENFRLQQQIEELARGLQAQRRVTAERDAEIISLRERLSMAQAREEALAQQATRSTALKEEVESLRKCLEQANGMVLFKKSGVSEEAERAKVE--ARRRHLREQRRLIEKDLLLEIETLE 314
The following BLAST results are available for this feature:
BLAST of NO12G01550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005856110.13.600e-1329.21hypothetical protein NGA_0333000, partial [Nannoch... [more]
EWM25887.13.600e-1329.21hypothetical protein Naga_100054g18 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01550.1NO12G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592101gene_5314Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01550.1NO12G01550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01550 ID=NO12G01550|Name=NO12G01550|organism=Nannochloropsis oceanica|type=gene|length=2524bp
TTTCTCTCTGTCTGTCCCTTTCTTTTTGTGCTTTTTTTTTGTGGATACCA
ATATATGCCAGTATTGATCCCTTTCTTCTCCTTCCCAAAAAACAGTTGAA
ATACATGTAGTGGCGTTCCATCTTCACGAACCCGTTTCTTTTCTGCCTTT
CTTTCCTGCACAAGATCGCTCATACGTACACAATCAAGTAGTAGATTCAG
TCACTCCTCCTCTCTTAACACTCCTTCTTCCCCCATTCCCCGGTCTCTGT
TTTCCCCGTTTTATTTCGAGGACAACTCAGACCAATCCGAAATTATGTAT
GCAGGCGTCGCCGCGTCCATGTTCTCTGTCCCCATCTTATCTGCATAGGC
AGCTCTCATCCCCAAAGCTGTCGCCACAGTAGTCAGGTGCGAAACATTGC
TTTTAATCGCCTCAACTCCCAAAAAATTGCCCTCCCTTTGTTCCTGCTGC
CGGTGCAGTCGCTGTTTCCCTCCACCGCACCCGGTCGGTGCCGAGCTCGC
CTTCAGCAAGACTGTGAGATCATTTAACCGGTCCTTGAGCAGGCCGATCT
CGCTCCTGATGGGCGAAAGAGCGGCGTTCGTCAGCTGCTGGTGCCGACGC
AAGGACTCCTCAAAGCTATCTGTGAGCTCGTCCAGGGCAATATCGTTTGC
CGCTAGCTTTTCCTCCAGCAATCGCAGCTTCTCCTGCAGTTTTTCCAAAG
CAAAACTATTCTTATTCTTTTGCTCCACGAGCTCCATAGCCTCGGCCAGG
GCTTTGTGCAGGTCCTCGCGCTCCGCCCGGTCGAGTAGCTTCTTATGCTC
GGGTCTCAGGACGACAGATTTACGTCGGCTTAAACACTTTCCCAAATTGC
TCGGCAGCAAGATACTCAAAGTCGTTACAACCATGGCTGTGCTAGCCACC
ATAAGCAAGACCTGCTTAGATGGAGAAGACATAATTGCGGATCACTTGTG
TGTCGACTTGGCCCGGGGGGGACGACAGGACTTGAAGCGTGTCGTCAGTA
ACTTCTTCTTGCGTCGTCGAGCGTCTTCCTTGCGTCTTGGACACGACAAG
GCTATGTATTTGTGAAAGGAGAGGGCAATGCAGGATTCGATTGAAAAATT
GTGTGGGCTAAAGTAAGCAGAGGGGAGGGCCAGTAGTGCATGGGTTTGAC
GACGTCGGATGGCATGGCGTCAAAAGGCGACCCTGATCTGATCTGACGAC
TTGGACTCCCGTGACGAAATCGCTCTCACATGCCCGCCACTTCTAACTTC
ACGGTCACATGCACGCACACGCACACCACCAATGTCACTTTATAGTTATG
GCATCTCGTGGCCCAAGCACTAACAGTACCCGGACAAGCTGTCGACGACC
GCTCCTCCGCACCCGGCCGCTCCCGCCATCCCCTCCTCCGTCTCCTCACC
GTGGCACTATCGTGAGCACCACCAATCATTTCCCGAGTGCAACCGTATCC
GTCACGGAGCTGCAGGAGGTTTTGGGTGACTATCAACATATTAAGCAACA
GTTAGCGCGTTTGCGGAAGCAGGTGTTCATGACGGAGCTTAAGGGCTTGG
CAGAGATCTCGGCTTTGGTCTCCGAGAATGGGGAGGAGGGTTTTAAAAGT
AAACGACGGCCGCAACATGGCGTAAATCTGGTAGCGAAAACACAAATGAA
AGTAGGAAAGGAGGCTGAAGAAGCCATGGTGTGGATGCTCAAGGCAGAGG
TGGAAGAGATGAATCAGTCGCTAAAACAACGGGAGGAGGAACATGAGGAA
GAAAAGACACATTTACAAGCGTATTGCATTGAGCTGGAGGATCATGTAGC
CACGGCGATGGAGCAGGCAGAGCTCGCACAGgtagtgtttttaattgcgc
tatcatttttgctatggctaaatacacgcagtcacttcctctccccaact
ctcctctcatccctcccccttgttgtagGCACAAGCACAGGCAGCGCAAG
AAGAGCTGGAACACGATCGCGAAAACTCCCGTCAAGAAATTTTCCGCCTT
CAAGAACAGATCGAGGAACTAGCAGAAGCCCTTAAAACCCACGAACGGCT
TACGATGGCACACAATACAGAGATAACGAAGTTGCGAAAAGGGCTACTCG
AGGAGGAAGCTGAGAAAGAGGAATACAAGAAACGGCTGGAAAATACCAAG
GGTCTCGATGAAGAGATGGGAAGGCTACGAAAAGCGTTGATACAAACAGA
AGAAAGGGTGGCGGGGATGGAGGAAGGGGCAAAGCATGCGAAGGAGAAGG
AGATGGAGAGGAGGAGGGTTATCAGGGAGCAACGGAAAGTGATAGAGAAT
GAATTGATGCTAGAGATGGAGAGGGTGGAGCAGGATATGGCAGCGGCAGC
AGTCAGAAATGGAGGAGGATCAGAAGCAGCAACAGGCATAAGTATTTGAG
AGATGTGCGGGATATGTCAGATATGTCAGTGGGAAGGAGGAAAAGAATGA
GCGATAGAACGAATGATACTCTGACTGTGACTTAAACAAACAAAACAAAT
CGAGTATATCGTCGAGAAGACAAG
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protein sequence of NO12G01550.1

>NO12G01550.1-protein ID=NO12G01550.1-protein|Name=NO12G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MHAHAHHQCHFIVMASRGPSTNSTRTSCRRPLLRTRPLPPSPPPSPHRGT
IVSTTNHFPSATVSVTELQEVLGDYQHIKQQLARLRKQVFMTELKGLAEI
SALVSENGEEGFKSKRRPQHGVNLVAKTQMKVGKEAEEAMVWMLKAEVEE
MNQSLKQREEEHEEEKTHLQAYCIELEDHVATAMEQAELAQAQAQAAQEE
LEHDRENSRQEIFRLQEQIEELAEALKTHERLTMAHNTEITKLRKGLLEE
EAEKEEYKKRLENTKGLDEEMGRLRKALIQTEERVAGMEEGAKHAKEKEM
ERRRVIREQRKVIENELMLEMERVEQDMAAAAVRNGGGSEAATGISI*
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Synonyms
Publications