NO12G01530, NO12G01530 (gene) Nannochloropsis oceanica

Overview
NameNO12G01530
Unique NameNO12G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1428
Alignment locationchr12:468051..469478 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:468051..469478 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01530.1NO12G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592095gene_5311Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01530.1NO12G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01530 ID=NO12G01530|Name=NO12G01530|organism=Nannochloropsis oceanica|type=gene|length=1428bp
ATGCAGAACCGTGTGCTCCCCGCGGCCTTGGCTCGCTTGGCAGCCTCCAC
GACTTCAGCCACCCTCCTTCTCGTCCCTGCTTCATTCCTTCTGCTGCTGC
TGTTGCAATTCTTTCTACCAATTGTCGCAGCCGATTCGACGCTTTTCCCG
CCCCTGCCGCTGCTTAATCAGAATGTCCTCGTTCAAGTCTCCCTCCTTCT
CTCCCCCTCTCCTACACCCATACACCCCATCCCGCTAGACATTCGCTTCA
CGTGCGCATCGACCTCAGCAGCCTTCACTCTCAACAGCACTTACACGCTC
ACTTCTCTCTTTACCTCTTCACTGGCGCACGTAGACGCGCTGTCTTCAAA
GCAAAAGCAGGCGCAGCCCGCATGGACATTCGCCGCCGACAGACACCAGC
TTCAAACACTGCAGCCATGCTGGGTCACGGCGCATACCATTGACACGCCT
CGCCAGCGTCTTGGCTCGAAAGTCGTGTATCCTCCAGgtatgaagctaca
cagagggaaatacgcatatgcttgatggcaggaaggaagaggacccatca
gctgtcgtttgtctaaccccctcccttcctcacattttcccttccattcc
caccacgcacacacaacagCAACTGCCATGCAGCTCTCCATCGTCCTTAG
GATCCATCTTCCCTCACACACTTTGGCCTCCTCCTCCACCTTCTTTTCCT
CCCCTTCCTCTTCTTCTTTCTCCTTTTCCACCTTTTATAACTCCTGGCTG
TCCAAAATCCGGCAACAAACCTACTATTCCCGTACGCGGCTTTTAGAAAT
TCTCATCACATATTACTGGGTGAAAATTACGGCTAAGGACGCCCTCGTCT
TCTTATCCTTTCTCGGTCTTTTCATACAATGCTGTCTTGTGATTGGAGGG
GTGATGTTAGCGTTGGTGCGGAGAACTAAGGAAGAGACCGAGGAGAACAA
ATCGCCTCATGGACAGGAAACGTGCACGTCATTGGCATCCTTCTTCTATT
CTCCACTTACCCTTGCCTCGCAAAAATGCACCGCGCTCACAACACATCCA
CGACGCGTCAGCAGCAACAACAGCAGCAGCAGCAACTACAGTCACAATAG
ACATCAACCTCCCTCCCTCACCGCCATCTCTAGCAACAAGAAGAGGGAAA
GTAATATTACTGTTAGCAAACTCGCAGGAGACTCCTCGTCATTCCTCTTC
CTTGATGTACCGTTTTCGAGTCAATGGCAATGCGTGACGCACGATTGTCG
GGCGGCGCCCACCCTTCTGCAAGACAGAGATTTAGACGCCGTGGCTGCTG
CTGGTGGCTCTGGTAGAAAATTAAAGGGGAGGCACCATCAGGTGATTCCA
ACACCGAAGGAGGTAATGGCACGGCTATTTGCCGACGATCGAAAGGTTAA
AGGTATGGTGTTGTCGGCCAAGTCTTGA
back to top

protein sequence of NO12G01530.1

>NO12G01530.1-protein ID=NO12G01530.1-protein|Name=NO12G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MQNRVLPAALARLAASTTSATLLLVPASFLLLLLLQFFLPIVAADSTLFP
PLPLLNQNVLVQVSLLLSPSPTPIHPIPLDIRFTCASTSAAFTLNSTYTL
TSLFTSSLAHVDALSSKQKQAQPAWTFAADRHQLQTLQPCWVTAHTIDTP
RQRLGSKVVYPPATAMQLSIVLRIHLPSHTLASSSTFFSSPSSSSFSFST
FYNSWLSKIRQQTYYSRTRLLEILITYYWVKITAKDALVFLSFLGLFIQC
CLVIGGVMLALVRRTKEETEENKSPHGQETCTSLASFFYSPLTLASQKCT
ALTTHPRRVSSNNSSSSNYSHNRHQPPSLTAISSNKKRESNITVSKLAGD
SSSFLFLDVPFSSQWQCVTHDCRAAPTLLQDRDLDAVAAAGGSGRKLKGR
HHQVIPTPKEVMARLFADDRKVKGMVLSAKS*
back to top
Synonyms
Publications