NO12G01500, NO12G01500 (gene) Nannochloropsis oceanica

Overview
NameNO12G01500
Unique NameNO12G01500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2143
Alignment locationchr12:460829..462971 -

Link to JBrowse

Properties
Property NameValue
DescriptionUv excision repair protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:460829..462971 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0019538protein metabolic process
GO:0009056catabolic process
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO:0005515protein binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036353XPC-bd_sf
IPR029071Ubiquitin-rel_dom
IPR009060UBA-like
IPR015360XPC-bd
IPR015940UBA/transl_elong_EF1B_N_euk
IPR000626Ubiquitin-like
IPR006636STI1_HS-bd
Homology
[Close]
BLAST of NO12G01500 vs. NCBI_GenBank
Match: ETL78956.1 (UV excision repair protein Rad23 [Phytophthora parasitica])

HSP 1 Score: 110.2 bits (274), Expect = 2.000e-20
Identity = 155/457 (33.92%), Postives = 203/457 (44.42%), Query Frame = 0 
Query:   68 MKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAEHSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD---------------------------------QVEGLISMGFAEAHVRAALEATGGNPDAAYTLLESGGPIQPXXXXXXXXXXXXXXXXXXXXIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGTEAVXXXXXXXXXXXXXXXXXXXXVNPFAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQRNQLLSTLVGLPLEQVEQFSGQLIQALASGTAPGM-----------PGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAEAGGG 481
            MKL V+ +      ++ E +  +  +K K++ E      ++QK+I+ GKVLKD  T+    V E DF V MV+ P  PKP+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                      V+ L+ MGF E  VR+AL A   NP+ A   L +G P Q                       SLE LR  PQFD LR++VQSNP A+  VL  IG QSP+L ++I   QD F+ M+NEPI   EA                       P +G                               E Q    ++  +G+  EQ+   S Q++  L  G    M                            + EEAA +++L EMGFER + +Q +LACDKN  +AA+ L    ++ GG
Sbjct:    1 MKLTVKTLQGVAFPLDAELTDAVSAVKQKIE-ELQKFPVSQQKLIHAGKVLKDDSTLAEYNVKENDFLVVMVTKPKAPKPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQMSATVQQLVDMGFPEDQVRSALRAAFNNPERAVEYLMTGIPEQAQAPAQTAAPSTGAAAGGDEASNSLEALRNHPQFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPIGTREA--------------------GSAPSSGAGAAPFDLGMGGNGAMPTPQQIQQLVDSLTPEQQAQ--MAAQMGMTPEQLRGLS-QMLSNLPPGAMEQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLMDSGDSFGG 433
[Close]
BLAST of NO12G01500 vs. NCBI_GenBank
Match: OEU15151.1 (XPC-binding-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 109.4 bits (272), Expect = 3.400e-20
Identity = 135/250 (54.00%), Postives = 165/250 (66.00%), Query Frame = 0 
Query:   68 MKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAEHSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPDQVEGLISMGFAEAHVRAALEATGGNPDAAYTLLESG---GPIQPXXXXXXXXXXXXXXXXXXXXIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPI 315
            MKL V+ +   + VV+ EP+  + E+K  +++ +S    +  K+I+ GKVLKD  +IES G+ + DF V MV+   K        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    + V  L  MGF EA VR  L A+ GNPD A   L +G   G    XXXXXXXXXXXXXXXXXXXX  +L  LR+ PQF+ LR++VQSNP  +  VL  IGQQ P+L   I A Q+ F+ MMNEPI
Sbjct:    1 MKLTVKTLKGSKFVVDCEPTNTVLEVKGIIESTNSDLPASNLKLIHSGKVLKDVTSIESCGIKQDDFLVVMVTKAKKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFPEEVVSSLTGMGFPEAEVRHCLRASSGNPDVAVEFLTNGIPPGMQXXXXXXXXXXXXXXXXXXXXXXXETLSALRSHPQFNALRQLVQSNPAMLQTVLTQIGQQQPELLTEINANQEIFLQMMNEPI 250
[Close]
BLAST of NO12G01500 vs. NCBI_GenBank
Match: XP_012194230.1 (UV excision repair protein Rad23 [Saprolegnia parasitica CBS 223.65] >KDO34552.1 UV excision repair protein Rad23 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 108.6 bits (270), Expect = 5.700e-20
Identity = 173/460 (37.61%), Postives = 213/460 (46.30%), Query Frame = 0 
Query:   68 MKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAEHSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD-----------------QVEGLISMGFAEAHVRAALEATGGNPDAAYTLLESGGP----IQPXXXXXXXXXXXXXXXXXXXXIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGTEAVXXXXXXXXXXXXXXXXXXXXVNPFAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQRNQLLSTLVGLPLEQVEQFSGQLIQALASGTAP---------------------GMPGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEA-----EAGGG 481
            MKL V+ +      +E E +  +  +K K++ ++  A    QK+I+ GKVLKD   +    V E DF V MV+ P          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                      ++ L  MGF E  VR AL+A   NPD A   L +G P    I       XXXXXXXXXXXX     SLE LR  PQFD LRR++QSNP A+  VL  IG QSP+L ++I A Q+ F+ M+NEPI   EA                     ++   G                                    QL   +  L  EQ  Q + Q                                G PGAG         RI LT EEAA +N+LV+MGF+RNEA+Q +LACDKN  +AA+ L         +A GG
Sbjct:    1 MKLTVKTLQGVAFPIEAELTDTVLSVKAKIEQQNGSAVDL-QKLIHAGKVLKDESPLSEYNVKENDFLVVMVTKPKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVVGEALSATIQQLCDMGFPEDQVRLALQAAFNNPDRAVEYLMNGIPDTRQIPVGGAPAXXXXXXXXXXXXLAGTNSLEALRNHPQFDALRRLIQSNPAALPTVLQQIGGQSPELLRLIHANQEQFVRMLNEPI--AEAA-----------PADQGGFGDMDDMGGAMPTP------------------------------QQLQQLMASLSPEQQAQMAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAPGAG------APTRIHLTEEEAAAINRLVDMGFDRNEAVQAYLACDKNEALAANFLMDSMSGDYDDAAGG 410
[Close]
BLAST of NO12G01500 vs. NCBI_GenBank
Match: CCI46099.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 105.5 bits (262), Expect = 4.800e-19
Identity = 149/430 (34.65%), Postives = 199/430 (46.28%), Query Frame = 0 
Query:   68 MKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAEHSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVVA----------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPDQVEGLISMGFAEAHVRAALEATGGNPDAAYTLLESGGPIQPXXXXXXXXXXXXXXXXXXXXIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGTEAVXXXXXXXXXXXXXXXXXXXXVNPFAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQRNQLLSTLVGLPLEQVEQFSGQLIQ----ALASGTAPGMPGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVL 472
            M+L V+ +      +E E +  +  +KTK++ E      ++QK+I+ GK+LKD   +    + E DF V MVS P   +PT                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     V  L  MGF E  VR+ L+A  GNPD A   L +G P                       + SLE LR  PQF   R +V++NP A+  +L  IG Q+P+L ++I   Q  F+ M+NE      A                         A L                               AQ  Q+ + + GL  EQ+   S  L +    AL   +     GAG  A   G  RI L+ EEAA +++L +MGF+R+EA Q +LAC+KN  +AA++L
Sbjct:    1 MRLTVKTLQGNAFSIEAELTDTVAVVKTKIE-EAQEFQASQQKLIHAGKILKDDTVLSEYNIRENDFIVVMVSKPKGSRPTSAVPSNTTAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVRQLCDMGFPEEQVRSCLQAAFGNPDRAVEYLMNGIP-----ENLVNPTTAAVPSTGSPGVGSLEQLRNHPQFASFREVVRTNPAALPALLQQIGGQNPELLRLIHENQSQFLQMLNEESTAPAAESRQGGQDVAGGGQTLSADHIQRLLASL-----------------------------SPAQMAQMAAQM-GLSPEQLRDVSHMLGELPPGALEQLSRAYGGGAGSAAGETGGHRIMLSEEEAAAVDRLCDMGFDRSEAAQAYLACEKNEALAANLL 394
[Close]
BLAST of NO12G01500 vs. NCBI_GenBank
Match: EJK72575.1 (hypothetical protein THAOC_05883 [Thalassiosira oceanica])

HSP 1 Score: 105.1 bits (261), Expect = 6.300e-19
Identity = 121/282 (42.91%), Postives = 140/282 (49.65%), Query Frame = 0 
Query:  195 VEGLISMGFAEAHVRAALEATGGNPDAAYTLLESG-----GPIQPXXXXXXXXXXXXXXXXXXXXIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGTEAVXXXXXXXXXXXXXXXXXXXXVNPFAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQRNQLLSTLVGLPLEQVEQFSGQLIQALASGTAPGMPGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVL 472
            V  L ++GF +  V A L A+ GNPD A   L +G     G    XXXXXXXXXXXXXXXXXXXX   L  LR  PQFD LRR+VQSNPNA+ QVLA IGQQ P+L Q I A Q  F+AMMNEP+    A                                       XXXXXXXXXXXXX       A                              G  PGM G GG     G Q + L+ EE A +N+L EMGF+R EA Q +LACDKN  +AA++L
Sbjct:  235 VNNLKALGFPDEMVVACLRASNGNPDVAVEFLMNGIPPGIGGXXXXXXXXXXXXXXXXXXXXXXXXXXLAALRNHPQFDSLRRLVQSNPNALQQVLAQIGQQQPELLQAINANQQEFLAMMNEPVAEAPA------------------------------------GGGXXXXXXXXXXXXXDDGRRRRAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXGGMPPGMMGGGGEG---GPQVLRLSEEEMAAVNRLTEMGFDRTEAAQAYLACDKNEALAANLL 477
[Close]
BLAST of NO12G01500 vs. NCBI_GenBank
Match: XP_008914834.1 (UV excision repair protein Rad23 [Phytophthora parasitica INRA-310] >ETM99903.1 UV excision repair protein Rad23 [Phytophthora parasitica INRA-310])

HSP 1 Score: 105.1 bits (261), Expect = 6.300e-19
Identity = 173/473 (36.58%), Postives = 221/473 (46.72%), Query Frame = 0 
Query:   68 MKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAEHSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD-------------------------------------------------QVEGLISMGFAEAHVRAALEATGGNPDAAYTLLESGGPIQPXXXXXXXXXXXXXXXXXXXXIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGTEAVXXXXXXXXXXXXXXXXXXXXVNPFAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQRNQLLSTLVGLPLEQVEQFSGQLIQALASGTAPGM-----------PGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAEAGGG 481
            MKL V+ +      ++ E +  +  +K K++ E      ++QK+I+ GKVLKD  T+    V E DF V MV+ P  PKP+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                      V+ L+ MGF E  VR+AL A   NP+ A   L +G P Q   XXXXXXXXXXXXXXXXXX  SLE LR  PQFD LR++VQSNP A+  VL  IG QSP+L ++I   QD F+ M+NEPI   EA                       P +G                               E Q    ++  +G+  EQ+   S Q++  L  G    M                            + EEAA +++L EMGFER + +Q +LACDKN  +AA+ L    ++ GG
Sbjct:    1 MKLTVKTLQGVAFPLDAELTDAVSAVKQKIE-ELQKFPVSQQKLIHAGKVLKDDSTLAEYNVKENDFLVVMVTKPKAPKPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMSATVQQLVDMGFPEDQVRSALRAAFNNPERAVEYLMTGIPEQAQAXXXXXXXXXXXXXXXXXXXNSLEALRNHPQFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPIGTREA--------------------GSAPSSGAGAAPFDLGMGGNGAMPTPQQIQQLVDSLTPEQQAQ--MAAQMGMTPEQLRGLS-QMLSNLPPGAMEQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLMDSGDSFGG 449
[Close]
BLAST of NO12G01500 vs. NCBI_GenBank
Match: KUG01287.1 (UV excision repair protein RAD23 B [Phytophthora nicotianae])

HSP 1 Score: 104.4 bits (259), Expect = 1.100e-18
Identity = 171/457 (37.42%), Postives = 218/457 (47.70%), Query Frame = 0 
Query:   68 MKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAEHSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD---------------------------------QVEGLISMGFAEAHVRAALEATGGNPDAAYTLLESGGPIQPXXXXXXXXXXXXXXXXXXXXIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGTEAVXXXXXXXXXXXXXXXXXXXXVNPFAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQRNQLLSTLVGLPLEQVEQFSGQLIQALASGTAPGM-----------PGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAEAGGG 481
            MKL V+ +      ++ E +  +  +K K++ E      ++QK+I+ GKVLKD  T+    V E DF V MV+ P  P       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                      V+ L+ MGF E  VR+AL A   NP+ A   L +G P Q   XXXXXXXXXXXXXXXXXX  SLE LR  PQFD LR++VQSNP A+  VL  IG QSP+L ++I   QD F+ M+NEPI   EA                       P +G                               E Q    ++  +G+  EQ+   S Q++  L  G    M                            + EEAA +++L EMGFER + +Q +LACDKN  +AA+ L    ++ GG
Sbjct:    1 MKLTVKTLQGVAFPLDAELTDAVSAVKQKIE-ELQKFPVSQQKLIHAGKVLKDDSTLAEYNVKENDFLVVMVTKPKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEQMSATVQQLVDMGFPEDQVRSALRAAFNNPERAVEYLMTGIPEQAQAXXXXXXXXXXXXXXXXXXXNSLEALRNHPQFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPIGTREA--------------------GSAPSSGAGAAPFDLGMGGNGAMPTPQQIQQLVDSLTPEQQAQ--MAAQMGMTPEQLRGLS-QMLSNLPPGAMEQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLMDSGDSFGG 433
[Close]
BLAST of NO12G01500 vs. NCBI_GenBank
Match: ETK72284.1 (UV excision repair protein Rad23 [Phytophthora parasitica] >ETO60656.1 UV excision repair protein Rad23 [Phytophthora parasitica P1976])

HSP 1 Score: 103.2 bits (256), Expect = 2.400e-18
Identity = 107/297 (36.03%), Postives = 139/297 (46.80%), Query Frame = 0 
Query:  195 VEGLISMGFAEAHVRAALEATGGNPDAAYTLLESGGPIQPXXXXXXXXXXXXXXXXXXXXIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGTEAVXXXXXXXXXXXXXXXXXXXXVNPFAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQRNQLLSTLVGLPLEQVEQFSGQLIQALASGTAPGM-----------PGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAEAGGG 481
            V+ L+ MGF E  VR+AL A   NP+ A   L +G P Q   XXXXXXXXXXXXXXXXXX  SLE LR  PQFD LR++VQSNP A+  VL  IG QSP+L ++I   QD F+ M+NEPI   EA                       P +G                               E Q    ++  +G+  EQ+   S Q++  L  G    M                            + EEAA +++L EMGFER + +Q +LACDKN  +AA+ L    ++ GG
Sbjct:  160 VQQLVDMGFPEDQVRSALRAAFNNPERAVEYLMTGIPEQAQAXXXXXXXXXXXXXXXXXXXNSLEALRNHPQFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPIGTREA--------------------GSAPSSGAGAAPFDLGMGGNGAMPTPQQIQQLVDSLTPEQQAQ--MAAQMGMTPEQLRGLS-QMLSNLPPGAMEQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLMDSGDSFGG 433
[Close]
BLAST of NO12G01500 vs. NCBI_GenBank
Match: ETL25740.1 (UV excision repair protein Rad23 [Phytophthora parasitica] >ETP01771.1 UV excision repair protein Rad23 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 103.2 bits (256), Expect = 2.400e-18
Identity = 89/297 (29.97%), Postives = 121/297 (40.74%), Query Frame = 0 
Query:  195 VEGLISMGFAEAHVRAALEATGGNPDAAYTLLESGGPIQPXXXXXXXXXXXXXXXXXXXXIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGTEAVXXXXXXXXXXXXXXXXXXXXVNPFAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQRNQLLSTLVGLPLEQVEQFSGQLIQALASGTAPGM-----------PGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAEAGGG 481
            V+ L+ MGF E  VR+AL A   NP+ A   L +G P Q                       SLE LR  PQFD LR++VQSNP A+  VL  IG QSP+L ++I   QD F+ M+NEPI   EA                       P +G                               E Q    ++  +G+  EQ+   S Q++  L  G    M                            + EEAA +++L EMGFER + +Q +LACDKN  +AA+ L    ++ GG
Sbjct:  160 VQQLVDMGFPEDQVRSALRAAFNNPERAVEYLMTGIPEQAQAPAQMAAPSTGAAAGGDEAANSLEALRNHPQFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPIGTREA--------------------GSAPSSGAGAAPFDLGMGGNGAMPTPQQIQQLVDSLTPEQQAQ--MAAQMGMTPEQLRGLS-QMLSNLPPGAMEQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLMDSGDSFGG 433
[Close]
BLAST of NO12G01500 vs. NCBI_GenBank
Match: OQR93090.1 (hypothetical protein ACHHYP_02937 [Achlya hypogyna])

HSP 1 Score: 103.2 bits (256), Expect = 2.400e-18
Identity = 196/433 (45.27%), Postives = 235/433 (54.27%), Query Frame = 0 
Query:   68 MKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAEHSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPD----------------------QVEGLISMGFAEAHVRAALEATGGNPDAAYTLLESGGP-----IQPXXXXXXXXXXXXXXXXXXXXIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGTEAV--XXXXXXXXXXXXXXXXXXXXVNPFAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQRNQLLSTLVGLPLEQVEQFSGQLIQALASGTAPGMPGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVL 472
            MKL V+ +      +E EP+  +  +K K++A++  A    QK+I+ GKVLKD   +    + E DF V MV+ P   K      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           ++ L  MGF E  VR AL+A   NPD A   L +G P        XXXXXXXXXXXXXXXXXXXX  +LE LR  PQF+ LRR++Q+NP A+  VL  IG QSP+L ++I A Q+ F+ M+NEPI  T A                           A L    XXXXXXXXXXXXXXXXXXXXXXXXXX            G                       G PGAG         RI LT EEAA +N+L +MGF+RNEA+Q +LACDKN  +AA+ L
Sbjct:    1 MKLTVKTLQGVAFPLEAEPTDTVLSVKQKIEAQNGSAVDL-QKLIHAGKVLKDESPLSEYNIKENDFLVVMVTKPKPAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVVGEALSATIQQLCDMGFPENEVRLALQAAFNNPDRAVEYLMNGIPDTRHIPXXXXXXXXXXXXXXXXXXXXXXXNTLEALRNHPQFNALRRLIQANPAALPTVLQQIGGQSPELLRLIHANQEQFVRMLNEPITETTAPSDEGNFDMGDDMGGAMPTPQQLQQLMASLTPEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----------------------GAPGAG------APTRIHLTEEEAAAINRLCDMGFDRNEAVQAYLACDKNEALAANFL 403
The following BLAST results are available for this feature:
BLAST of NO12G01500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETL78956.12.000e-2033.92UV excision repair protein Rad23 [Phytophthora par... [more]
OEU15151.13.400e-2054.00XPC-binding-domain-containing protein [Fragilariop... [more]
XP_012194230.15.700e-2037.61UV excision repair protein Rad23 [Saprolegnia para... [more]
CCI46099.14.800e-1934.65unnamed protein product [Albugo candida][more]
EJK72575.16.300e-1942.91hypothetical protein THAOC_05883 [Thalassiosira oc... [more]
XP_008914834.16.300e-1936.58UV excision repair protein Rad23 [Phytophthora par... [more]
KUG01287.11.100e-1837.42UV excision repair protein RAD23 B [Phytophthora n... [more]
ETK72284.12.400e-1836.03UV excision repair protein Rad23 [Phytophthora par... [more]
ETL25740.12.400e-1829.97UV excision repair protein Rad23 [Phytophthora par... [more]
OQR93090.12.400e-1845.27hypothetical protein ACHHYP_02937 [Achlya hypogyna... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010071NSK010071Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01500.1NO12G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592084gene_5308Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100054g12gene4638Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01500.1NO12G01500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01500 ID=NO12G01500|Name=NO12G01500|organism=Nannochloropsis oceanica|type=gene|length=2143bp
CTCTCAGTGCTTTTCATCCTAAATTTCTCATCTCCAGACCTGAATCACGC
ACGGTATCCACACGTAATACACAAAAAGCTCCTATATAAATGTTCAGGAC
GCTTCAAAGATCACGTCCATGCAGTTTGATTGGACACGGGCCCTTATATG
TGACTTTTTGAGCGATCGACCGACCGGTACTGCATTCTGTGATCAGGCCA
GTAACGCTCTCGCCAACCGAGACTTCTCTTGCCTTCTTTCGCGTGGCCGG
GGCACCGTGGCTCTCTTCCCTTCCACATCACATCCGCACCCTTGCCTCAT
AGTCACAGAGTCAAGCAAGATGAAGCTGATGGTGAGGGACGTGGGGACTA
AGAGGATGGTGGTCGAGGTCGAACCTTCCCTAAAGATAGGTGAATTGAAA
ACCAAGCTCCAAGCCGAGCACAGTGTTGCTGATCCTGCACGCCAGAAGAT
GATTTACAAGGGAAAGGTATTGAAGGACGCCGACACCATCGAGTCCACGG
GTGTGACGGAGGCCGACTTCTACGTCTGCATGGTCTCGGCGCCGCCCAAG
gtatgttgtctaggacgagggagggggagcggggagggaactgaaacgga
gaggaggaatggggaaggcctcgcctggccacacacttagagtcaagaca
cttgcacgatctccttctctcttatatatacagCCCAAGCCGACTGTGGT
CGCCGCGCCAGCCCCTGCCCAGACAGCGGCCACGGCTGCTTCGACTGCGG
ATGCCACGGCGGCTACAGCCACTACAGCAGCCGCGTCGCCCGCTGCTCCA
CCCGCTGCGCCTGCATCCGTGGACCCTGATCAAGTGGAGGGTCTGATTTC
GATGGGTTTTGCAGAGGCACATGTCCGTGCCGCGTTGGAAGCGACGGGTG
GCAACCCAGATGCGGCCTACACGCTGTTGGAGAGCGGGGGCCCCATCCAA
CCACCTGCCCCTCCCGCTACGGCTGGTAGTGCCGCTCCTACTGCTAGCGG
TGCTCCAGGGGCGATTATGTCTCTGGAAGATCTCCGAGCGTCGCCGCAAT
TTGATCAGCTTCGTCGCATGGTTCAGAGTAATCCGAATGCGATTGACCAG
GTGTTGGCGGTCATTGGGCAGCAGAGCCCGCAGCTCTTTCAGGTCATTTT
GGCGCAACAAGACGCGTTTATTGCAATGATGAACGAACCAATCGAAGGCA
CAGAAGCAGTGGGAGCGGGAGCGGGTGCGGGTGCCGCAGGTGCTGGAGCG
GGAGGGGCGACGCAAGCGCAAGTGAATCCGTTTGCGGGCCTCGGAGCTAT
GGGGATGAGAGGGATGGAAGGAATGGGGGGCGAAAACGGGCCGTCCCCGC
AGCAGCTTGCGCAGATGTTGCAGTCCATGCCTGAGGCTCAGAGGAACCAA
CTTTTGTCCACGCTTGTGGGGCTGCCGCTTGAGCAAGTGGAACAGTTTAG
TGGTCAGCTGATCCAGGCGTTGGCGAGCGGGACGGCGCCGGGCATGCCGG
GGGCGGGGGGAGGAGCGATGCCCCCCGGGGCGCAGCGAATTGAGTTGACC
GCAGAAGAGGCAGCGAATTTGAACCAGTTGGTGGAGATGGGATTTGAACG
GAATGAGGCATTGCAGGTGTTTTTGGCCTGTGACAAGAACTTGGAGATGG
CGGCAAGTGTCTTGTTTCAGGAGGCGGAGGCTGGGGGAGGGAGTGGTGGT
CCGGGAAGGGGGGAAGGGGGAGAATCGGAGGGAGGGGACTCGGCTGGAAG
CGGGGGAGATCGACAGATGTACTGACTTAGTATTTTATTTGTTGATTTGT
TCAGAGGGAGGGAGGGAGGGAGGGAGGGGTGTTCGATGTATGAAAGCGAA
AGCACTCAGATATTAATGGTTTGGCCACTATGAGCACTTCCTCTTTGTGC
TGCGTGCGCACGAAGAAAGTGGAGGAAGTACTGAGGTGGAATGGCCCATA
CAGAAGGTCAGGGGCAGAAGATGGAACGTGGGTTGAAATAGAACACGAAG
AAAGTGGACTACGAGGATAGAATGTCAAGAAAAAAAGAAAAGACACAAGT
AGAAAGATGGTGGATAACAAGGTGACGACGAAGAGGAAGTAGTTGTAGAA
GAAGATGGATAACGAAAAGAGGATGGCGGAGCTCAAGTTCAGG
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protein sequence of NO12G01500.1

>NO12G01500.1-protein ID=NO12G01500.1-protein|Name=NO12G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MQFDWTRALICDFLSDRPTGTAFCDQASNALANRDFSCLLSRGRGTVALF
PSTSHPHPCLIVTESSKMKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAE
HSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVV
AAPAPAQTAATAASTADATAATATTAAASPAAPPAAPASVDPDQVEGLIS
MGFAEAHVRAALEATGGNPDAAYTLLESGGPIQPPAPPATAGSAAPTASG
APGAIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVIL
AQQDAFIAMMNEPIEGTEAVGAGAGAGAAGAGAGGATQAQVNPFAGLGAM
GMRGMEGMGGENGPSPQQLAQMLQSMPEAQRNQLLSTLVGLPLEQVEQFS
GQLIQALASGTAPGMPGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFER
NEALQVFLACDKNLEMAASVLFQEAEAGGGSGGPGRGEGGESEGGDSAGS
GGDRQMY*
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Synonyms
Publications