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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:460829..462971 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01500.1 vs.
Match: EWM25859.1 (uv excision repair protein [Nannochloropsis gaditana]) HSP 1 Score: 498.8 bits (1283), Expect = 2.000e-137 Identity = 311/441 (70.52%), Postives = 337/441 (76.42%), Query Frame = 0
Query: 68 MKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAEHSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVVAAPAPAQTAATAASTADATAATATTAAASPAAPPAAPASVDPDQVEGLISMGFAEAHVRAALEATGGNPDAAYTLLESGGPIQPPAPPATAGSAAPTASGAPGAIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGTEAVGAGAGAGAAGAGAGGATQAQVNPFAGLGAMGMRGMEGMG---GENGPSPQQLAQMLQSMPEAQRNQLLSTLVGLPLEQVEQFSGQLIQALASGTAPGMPGAGG--GAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAEAGG-GSGGPGRGEGGESEGGDSAGSGG 503
MKL V+DVG K+MVVEVEP++KIGELKTKLQAE + ADPARQKMI+KGKVLKD DTIESTGVTE DFYVCMVSA PKPK T VAAPAPA T A A + T T TT AA P AP+ D QVEGL+SMGFAEA+VRAALEATGG+PDAAY LLESG PIQPP P AT + S A +I SLE RA PQFDQLRR+VQSNP AIDQVL IGQQSPQL QVILAQQD F+AMMNEPIEG A +GA Q NPFA LG +G GMEG G G+NGPSPQQLAQ+LQ+MPE QRNQLL+ LVGLP EQV+QFSGQLI+ALASG APG+ G GG GA PPG+QRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAE GG G GG G G +GG GSGG
Sbjct: 1 MKLTVKDVGGKKMVVEVEPAMKIGELKTKLQAEQNGADPARQKMIHKGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPAPAATTAPATPSVGTTPETTTTGT---AATPPAPSPADAAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSA----TSAASNSITSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTA------SGAQQLQQQQQPSQQGNPFAALGGLG--GMEGAGGAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAETGGAGFGGAGGAGGSGGDGGSGGGSGG 426
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01500.1 ID=NO12G01500.1|Name=NO12G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2010bp CTCTCAGTGCTTTTCATCCTAAATTTCTCATCTCCAGACCTGAATCACGC ACGGTATCCACACGTAATACACAAAAAGCTCCTATATAAATGTTCAGGAC GCTTCAAAGATCACGTCCATGCAGTTTGATTGGACACGGGCCCTTATATG TGACTTTTTGAGCGATCGACCGACCGGTACTGCATTCTGTGATCAGGCCA GTAACGCTCTCGCCAACCGAGACTTCTCTTGCCTTCTTTCGCGTGGCCGG GGCACCGTGGCTCTCTTCCCTTCCACATCACATCCGCACCCTTGCCTCAT AGTCACAGAGTCAAGCAAGATGAAGCTGATGGTGAGGGACGTGGGGACTA AGAGGATGGTGGTCGAGGTCGAACCTTCCCTAAAGATAGGTGAATTGAAA ACCAAGCTCCAAGCCGAGCACAGTGTTGCTGATCCTGCACGCCAGAAGAT GATTTACAAGGGAAAGGTATTGAAGGACGCCGACACCATCGAGTCCACGG GTGTGACGGAGGCCGACTTCTACGTCTGCATGGTCTCGGCGCCGCCCAAG CCCAAGCCGACTGTGGTCGCCGCGCCAGCCCCTGCCCAGACAGCGGCCAC GGCTGCTTCGACTGCGGATGCCACGGCGGCTACAGCCACTACAGCAGCCG CGTCGCCCGCTGCTCCACCCGCTGCGCCTGCATCCGTGGACCCTGATCAA GTGGAGGGTCTGATTTCGATGGGTTTTGCAGAGGCACATGTCCGTGCCGC GTTGGAAGCGACGGGTGGCAACCCAGATGCGGCCTACACGCTGTTGGAGA GCGGGGGCCCCATCCAACCACCTGCCCCTCCCGCTACGGCTGGTAGTGCC GCTCCTACTGCTAGCGGTGCTCCAGGGGCGATTATGTCTCTGGAAGATCT CCGAGCGTCGCCGCAATTTGATCAGCTTCGTCGCATGGTTCAGAGTAATC CGAATGCGATTGACCAGGTGTTGGCGGTCATTGGGCAGCAGAGCCCGCAG CTCTTTCAGGTCATTTTGGCGCAACAAGACGCGTTTATTGCAATGATGAA CGAACCAATCGAAGGCACAGAAGCAGTGGGAGCGGGAGCGGGTGCGGGTG CCGCAGGTGCTGGAGCGGGAGGGGCGACGCAAGCGCAAGTGAATCCGTTT GCGGGCCTCGGAGCTATGGGGATGAGAGGGATGGAAGGAATGGGGGGCGA AAACGGGCCGTCCCCGCAGCAGCTTGCGCAGATGTTGCAGTCCATGCCTG AGGCTCAGAGGAACCAACTTTTGTCCACGCTTGTGGGGCTGCCGCTTGAG CAAGTGGAACAGTTTAGTGGTCAGCTGATCCAGGCGTTGGCGAGCGGGAC GGCGCCGGGCATGCCGGGGGCGGGGGGAGGAGCGATGCCCCCCGGGGCGC AGCGAATTGAGTTGACCGCAGAAGAGGCAGCGAATTTGAACCAGTTGGTG GAGATGGGATTTGAACGGAATGAGGCATTGCAGGTGTTTTTGGCCTGTGA CAAGAACTTGGAGATGGCGGCAAGTGTCTTGTTTCAGGAGGCGGAGGCTG GGGGAGGGAGTGGTGGTCCGGGAAGGGGGGAAGGGGGAGAATCGGAGGGA GGGGACTCGGCTGGAAGCGGGGGAGATCGACAGATGTACTGACTTAGTAT TTTATTTGTTGATTTGTTCAGAGGGAGGGAGGGAGGGAGGGAGGGGTGTT CGATGTATGAAAGCGAAAGCACTCAGATATTAATGGTTTGGCCACTATGA GCACTTCCTCTTTGTGCTGCGTGCGCACGAAGAAAGTGGAGGAAGTACTG AGGTGGAATGGCCCATACAGAAGGTCAGGGGCAGAAGATGGAACGTGGGT TGAAATAGAACACGAAGAAAGTGGACTACGAGGATAGAATGTCAAGAAAA AAAGAAAAGACACAAGTAGAAAGATGGTGGATAACAAGGTGACGACGAAG AGGAAGTAGTTGTAGAAGAAGATGGATAACGAAAAGAGGATGGCGGAGCT CAAGTTCAGG back to topprotein sequence of NO12G01500.1 >NO12G01500.1-protein ID=NO12G01500.1-protein|Name=NO12G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp MQFDWTRALICDFLSDRPTGTAFCDQASNALANRDFSCLLSRGRGTVALF PSTSHPHPCLIVTESSKMKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAE HSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVV AAPAPAQTAATAASTADATAATATTAAASPAAPPAAPASVDPDQVEGLIS MGFAEAHVRAALEATGGNPDAAYTLLESGGPIQPPAPPATAGSAAPTASG APGAIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVIL AQQDAFIAMMNEPIEGTEAVGAGAGAGAAGAGAGGATQAQVNPFAGLGAM GMRGMEGMGGENGPSPQQLAQMLQSMPEAQRNQLLSTLVGLPLEQVEQFS GQLIQALASGTAPGMPGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFER NEALQVFLACDKNLEMAASVLFQEAEAGGGSGGPGRGEGGESEGGDSAGS GGDRQMY* back to topmRNA from alignment at chr12:460829..462971- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01500.1 ID=NO12G01500.1|Name=NO12G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2143bp|location=Sequence derived from alignment at chr12:460829..462971- (Nannochloropsis oceanica) CTCTCAGTGCTTTTCATCCTAAATTTCTCATCTCCAGACCTGAATCACGC
ACGGTATCCACACGTAATACACAAAAAGCTCCTATATAAATGTTCAGGAC
GCTTCAAAGATCACGTCCATGCAGTTTGATTGGACACGGGCCCTTATATG
TGACTTTTTGAGCGATCGACCGACCGGTACTGCATTCTGTGATCAGGCCA
GTAACGCTCTCGCCAACCGAGACTTCTCTTGCCTTCTTTCGCGTGGCCGG
GGCACCGTGGCTCTCTTCCCTTCCACATCACATCCGCACCCTTGCCTCAT
AGTCACAGAGTCAAGCAAGATGAAGCTGATGGTGAGGGACGTGGGGACTA
AGAGGATGGTGGTCGAGGTCGAACCTTCCCTAAAGATAGGTGAATTGAAA
ACCAAGCTCCAAGCCGAGCACAGTGTTGCTGATCCTGCACGCCAGAAGAT
GATTTACAAGGGAAAGGTATTGAAGGACGCCGACACCATCGAGTCCACGG
GTGTGACGGAGGCCGACTTCTACGTCTGCATGGTCTCGGCGCCGCCCAAG
GTATGTTGTCTAGGACGAGGGAGGGGGAGCGGGGAGGGAACTGAAACGGA
GAGGAGGAATGGGGAAGGCCTCGCCTGGCCACACACTTAGAGTCAAGACA
CTTGCACGATCTCCTTCTCTCTTATATATACAGCCCAAGCCGACTGTGGT
CGCCGCGCCAGCCCCTGCCCAGACAGCGGCCACGGCTGCTTCGACTGCGG
ATGCCACGGCGGCTACAGCCACTACAGCAGCCGCGTCGCCCGCTGCTCCA
CCCGCTGCGCCTGCATCCGTGGACCCTGATCAAGTGGAGGGTCTGATTTC
GATGGGTTTTGCAGAGGCACATGTCCGTGCCGCGTTGGAAGCGACGGGTG
GCAACCCAGATGCGGCCTACACGCTGTTGGAGAGCGGGGGCCCCATCCAA
CCACCTGCCCCTCCCGCTACGGCTGGTAGTGCCGCTCCTACTGCTAGCGG
TGCTCCAGGGGCGATTATGTCTCTGGAAGATCTCCGAGCGTCGCCGCAAT
TTGATCAGCTTCGTCGCATGGTTCAGAGTAATCCGAATGCGATTGACCAG
GTGTTGGCGGTCATTGGGCAGCAGAGCCCGCAGCTCTTTCAGGTCATTTT
GGCGCAACAAGACGCGTTTATTGCAATGATGAACGAACCAATCGAAGGCA
CAGAAGCAGTGGGAGCGGGAGCGGGTGCGGGTGCCGCAGGTGCTGGAGCG
GGAGGGGCGACGCAAGCGCAAGTGAATCCGTTTGCGGGCCTCGGAGCTAT
GGGGATGAGAGGGATGGAAGGAATGGGGGGCGAAAACGGGCCGTCCCCGC
AGCAGCTTGCGCAGATGTTGCAGTCCATGCCTGAGGCTCAGAGGAACCAA
CTTTTGTCCACGCTTGTGGGGCTGCCGCTTGAGCAAGTGGAACAGTTTAG
TGGTCAGCTGATCCAGGCGTTGGCGAGCGGGACGGCGCCGGGCATGCCGG
GGGCGGGGGGAGGAGCGATGCCCCCCGGGGCGCAGCGAATTGAGTTGACC
GCAGAAGAGGCAGCGAATTTGAACCAGTTGGTGGAGATGGGATTTGAACG
GAATGAGGCATTGCAGGTGTTTTTGGCCTGTGACAAGAACTTGGAGATGG
CGGCAAGTGTCTTGTTTCAGGAGGCGGAGGCTGGGGGAGGGAGTGGTGGT
CCGGGAAGGGGGGAAGGGGGAGAATCGGAGGGAGGGGACTCGGCTGGAAG
CGGGGGAGATCGACAGATGTACTGACTTAGTATTTTATTTGTTGATTTGT
TCAGAGGGAGGGAGGGAGGGAGGGAGGGGTGTTCGATGTATGAAAGCGAA
AGCACTCAGATATTAATGGTTTGGCCACTATGAGCACTTCCTCTTTGTGC
TGCGTGCGCACGAAGAAAGTGGAGGAAGTACTGAGGTGGAATGGCCCATA
CAGAAGGTCAGGGGCAGAAGATGGAACGTGGGTTGAAATAGAACACGAAG
AAAGTGGACTACGAGGATAGAATGTCAAGAAAAAAAGAAAAGACACAAGT
AGAAAGATGGTGGATAACAAGGTGACGACGAAGAGGAAGTAGTTGTAGAA
GAAGATGGATAACGAAAAGAGGATGGCGGAGCTCAAGTTCAGG back to topCoding sequence (CDS) from alignment at chr12:460829..462971- >NO12G01500.1 ID=NO12G01500.1|Name=NO12G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at chr12:460829..462971- (Nannochloropsis oceanica) ATGCAGTTTGATTGGACACGGGCCCTTATATGTGACTTTTTGAGCGATCG ACCGACCGGTACTGCATTCTGTGATCAGGCCAGTAACGCTCTCGCCAACC GAGACTTCTCTTGCCTTCTTTCGCGTGGCCGGGGCACCGTGGCTCTCTTC CCTTCCACATCACATCCGCACCCTTGCCTCATAGTCACAGAGTCAAGCAA GATGAAGCTGATGGTGAGGGACGTGGGGACTAAGAGGATGGTGGTCGAGG TCGAACCTTCCCTAAAGATAGGTGAATTGAAAACCAAGCTCCAAGCCGAG CACAGTGTTGCTGATCCTGCACGCCAGAAGATGATTTACAAGGGAAAGGT ATTGAAGGACGCCGACACCATCGAGTCCACGGGTGTGACGGAGGCCGACT TCTACGTCTGCATGGTCTCGGCGCCGCCCAAGCCCAAGCCGACTGTGGTC GCCGCGCCAGCCCCTGCCCAGACAGCGGCCACGGCTGCTTCGACTGCGGA TGCCACGGCGGCTACAGCCACTACAGCAGCCGCGTCGCCCGCTGCTCCAC CCGCTGCGCCTGCATCCGTGGACCCTGATCAAGTGGAGGGTCTGATTTCG ATGGGTTTTGCAGAGGCACATGTCCGTGCCGCGTTGGAAGCGACGGGTGG CAACCCAGATGCGGCCTACACGCTGTTGGAGAGCGGGGGCCCCATCCAAC CACCTGCCCCTCCCGCTACGGCTGGTAGTGCCGCTCCTACTGCTAGCGGT GCTCCAGGGGCGATTATGTCTCTGGAAGATCTCCGAGCGTCGCCGCAATT TGATCAGCTTCGTCGCATGGTTCAGAGTAATCCGAATGCGATTGACCAGG TGTTGGCGGTCATTGGGCAGCAGAGCCCGCAGCTCTTTCAGGTCATTTTG GCGCAACAAGACGCGTTTATTGCAATGATGAACGAACCAATCGAAGGCAC AGAAGCAGTGGGAGCGGGAGCGGGTGCGGGTGCCGCAGGTGCTGGAGCGG GAGGGGCGACGCAAGCGCAAGTGAATCCGTTTGCGGGCCTCGGAGCTATG GGGATGAGAGGGATGGAAGGAATGGGGGGCGAAAACGGGCCGTCCCCGCA GCAGCTTGCGCAGATGTTGCAGTCCATGCCTGAGGCTCAGAGGAACCAAC TTTTGTCCACGCTTGTGGGGCTGCCGCTTGAGCAAGTGGAACAGTTTAGT GGTCAGCTGATCCAGGCGTTGGCGAGCGGGACGGCGCCGGGCATGCCGGG GGCGGGGGGAGGAGCGATGCCCCCCGGGGCGCAGCGAATTGAGTTGACCG CAGAAGAGGCAGCGAATTTGAACCAGTTGGTGGAGATGGGATTTGAACGG AATGAGGCATTGCAGGTGTTTTTGGCCTGTGACAAGAACTTGGAGATGGC GGCAAGTGTCTTGTTTCAGGAGGCGGAGGCTGGGGGAGGGAGTGGTGGTC CGGGAAGGGGGGAAGGGGGAGAATCGGAGGGAGGGGACTCGGCTGGAAGC GGGGGAGATCGACAGATGTACTGA back to top
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