NO12G01500.1, NO12G01500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01500.1
Unique NameNO12G01500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2010
Alignment locationchr12:460829..462971 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:460829..462971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G01500.1 vs.
Match: EWM25859.1 (uv excision repair protein [Nannochloropsis gaditana])

HSP 1 Score: 498.8 bits (1283), Expect = 2.000e-137
Identity = 311/441 (70.52%), Postives = 337/441 (76.42%), Query Frame = 0
Query:   68 MKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAEHSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVVAAPAPAQTAATAASTADATAATATTAAASPAAPPAAPASVDPDQVEGLISMGFAEAHVRAALEATGGNPDAAYTLLESGGPIQPPAPPATAGSAAPTASGAPGAIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVILAQQDAFIAMMNEPIEGTEAVGAGAGAGAAGAGAGGATQAQVNPFAGLGAMGMRGMEGMG---GENGPSPQQLAQMLQSMPEAQRNQLLSTLVGLPLEQVEQFSGQLIQALASGTAPGMPGAGG--GAMPPGAQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAEAGG-GSGGPGRGEGGESEGGDSAGSGG 503
            MKL V+DVG K+MVVEVEP++KIGELKTKLQAE + ADPARQKMI+KGKVLKD DTIESTGVTE DFYVCMVSA PKPK T VAAPAPA T A A  +   T  T TT     AA P AP+  D  QVEGL+SMGFAEA+VRAALEATGG+PDAAY LLESG PIQPP P AT  +     S A  +I SLE  RA PQFDQLRR+VQSNP AIDQVL  IGQQSPQL QVILAQQD F+AMMNEPIEG  A      +GA           Q NPFA LG +G  GMEG G   G+NGPSPQQLAQ+LQ+MPE QRNQLL+ LVGLP EQV+QFSGQLI+ALASG APG+ G GG  GA PPG+QRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAE GG G GG G   G   +GG   GSGG
Sbjct:    1 MKLTVKDVGGKKMVVEVEPAMKIGELKTKLQAEQNGADPARQKMIHKGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPAPAATTAPATPSVGTTPETTTTGT---AATPPAPSPADAAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSA----TSAASNSITSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTA------SGAQQLQQQQQPSQQGNPFAALGGLG--GMEGAGGAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAETGGAGFGGAGGAGGSGGDGGSGGGSGG 426          
The following BLAST results are available for this feature:
BLAST of NO12G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25859.12.000e-13770.52uv excision repair protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01500NO12G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01500.1NO12G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01500.1.cds1NO12G01500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01500.1.cds2NO12G01500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01500.1 ID=NO12G01500.1|Name=NO12G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2010bp
CTCTCAGTGCTTTTCATCCTAAATTTCTCATCTCCAGACCTGAATCACGC
ACGGTATCCACACGTAATACACAAAAAGCTCCTATATAAATGTTCAGGAC
GCTTCAAAGATCACGTCCATGCAGTTTGATTGGACACGGGCCCTTATATG
TGACTTTTTGAGCGATCGACCGACCGGTACTGCATTCTGTGATCAGGCCA
GTAACGCTCTCGCCAACCGAGACTTCTCTTGCCTTCTTTCGCGTGGCCGG
GGCACCGTGGCTCTCTTCCCTTCCACATCACATCCGCACCCTTGCCTCAT
AGTCACAGAGTCAAGCAAGATGAAGCTGATGGTGAGGGACGTGGGGACTA
AGAGGATGGTGGTCGAGGTCGAACCTTCCCTAAAGATAGGTGAATTGAAA
ACCAAGCTCCAAGCCGAGCACAGTGTTGCTGATCCTGCACGCCAGAAGAT
GATTTACAAGGGAAAGGTATTGAAGGACGCCGACACCATCGAGTCCACGG
GTGTGACGGAGGCCGACTTCTACGTCTGCATGGTCTCGGCGCCGCCCAAG
CCCAAGCCGACTGTGGTCGCCGCGCCAGCCCCTGCCCAGACAGCGGCCAC
GGCTGCTTCGACTGCGGATGCCACGGCGGCTACAGCCACTACAGCAGCCG
CGTCGCCCGCTGCTCCACCCGCTGCGCCTGCATCCGTGGACCCTGATCAA
GTGGAGGGTCTGATTTCGATGGGTTTTGCAGAGGCACATGTCCGTGCCGC
GTTGGAAGCGACGGGTGGCAACCCAGATGCGGCCTACACGCTGTTGGAGA
GCGGGGGCCCCATCCAACCACCTGCCCCTCCCGCTACGGCTGGTAGTGCC
GCTCCTACTGCTAGCGGTGCTCCAGGGGCGATTATGTCTCTGGAAGATCT
CCGAGCGTCGCCGCAATTTGATCAGCTTCGTCGCATGGTTCAGAGTAATC
CGAATGCGATTGACCAGGTGTTGGCGGTCATTGGGCAGCAGAGCCCGCAG
CTCTTTCAGGTCATTTTGGCGCAACAAGACGCGTTTATTGCAATGATGAA
CGAACCAATCGAAGGCACAGAAGCAGTGGGAGCGGGAGCGGGTGCGGGTG
CCGCAGGTGCTGGAGCGGGAGGGGCGACGCAAGCGCAAGTGAATCCGTTT
GCGGGCCTCGGAGCTATGGGGATGAGAGGGATGGAAGGAATGGGGGGCGA
AAACGGGCCGTCCCCGCAGCAGCTTGCGCAGATGTTGCAGTCCATGCCTG
AGGCTCAGAGGAACCAACTTTTGTCCACGCTTGTGGGGCTGCCGCTTGAG
CAAGTGGAACAGTTTAGTGGTCAGCTGATCCAGGCGTTGGCGAGCGGGAC
GGCGCCGGGCATGCCGGGGGCGGGGGGAGGAGCGATGCCCCCCGGGGCGC
AGCGAATTGAGTTGACCGCAGAAGAGGCAGCGAATTTGAACCAGTTGGTG
GAGATGGGATTTGAACGGAATGAGGCATTGCAGGTGTTTTTGGCCTGTGA
CAAGAACTTGGAGATGGCGGCAAGTGTCTTGTTTCAGGAGGCGGAGGCTG
GGGGAGGGAGTGGTGGTCCGGGAAGGGGGGAAGGGGGAGAATCGGAGGGA
GGGGACTCGGCTGGAAGCGGGGGAGATCGACAGATGTACTGACTTAGTAT
TTTATTTGTTGATTTGTTCAGAGGGAGGGAGGGAGGGAGGGAGGGGTGTT
CGATGTATGAAAGCGAAAGCACTCAGATATTAATGGTTTGGCCACTATGA
GCACTTCCTCTTTGTGCTGCGTGCGCACGAAGAAAGTGGAGGAAGTACTG
AGGTGGAATGGCCCATACAGAAGGTCAGGGGCAGAAGATGGAACGTGGGT
TGAAATAGAACACGAAGAAAGTGGACTACGAGGATAGAATGTCAAGAAAA
AAAGAAAAGACACAAGTAGAAAGATGGTGGATAACAAGGTGACGACGAAG
AGGAAGTAGTTGTAGAAGAAGATGGATAACGAAAAGAGGATGGCGGAGCT
CAAGTTCAGG
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protein sequence of NO12G01500.1

>NO12G01500.1-protein ID=NO12G01500.1-protein|Name=NO12G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MQFDWTRALICDFLSDRPTGTAFCDQASNALANRDFSCLLSRGRGTVALF
PSTSHPHPCLIVTESSKMKLMVRDVGTKRMVVEVEPSLKIGELKTKLQAE
HSVADPARQKMIYKGKVLKDADTIESTGVTEADFYVCMVSAPPKPKPTVV
AAPAPAQTAATAASTADATAATATTAAASPAAPPAAPASVDPDQVEGLIS
MGFAEAHVRAALEATGGNPDAAYTLLESGGPIQPPAPPATAGSAAPTASG
APGAIMSLEDLRASPQFDQLRRMVQSNPNAIDQVLAVIGQQSPQLFQVIL
AQQDAFIAMMNEPIEGTEAVGAGAGAGAAGAGAGGATQAQVNPFAGLGAM
GMRGMEGMGGENGPSPQQLAQMLQSMPEAQRNQLLSTLVGLPLEQVEQFS
GQLIQALASGTAPGMPGAGGGAMPPGAQRIELTAEEAANLNQLVEMGFER
NEALQVFLACDKNLEMAASVLFQEAEAGGGSGGPGRGEGGESEGGDSAGS
GGDRQMY*
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mRNA from alignment at chr12:460829..462971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01500.1 ID=NO12G01500.1|Name=NO12G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2143bp|location=Sequence derived from alignment at chr12:460829..462971- (Nannochloropsis oceanica)
CTCTCAGTGCTTTTCATCCTAAATTTCTCATCTCCAGACCTGAATCACGC ACGGTATCCACACGTAATACACAAAAAGCTCCTATATAAATGTTCAGGAC GCTTCAAAGATCACGTCCATGCAGTTTGATTGGACACGGGCCCTTATATG TGACTTTTTGAGCGATCGACCGACCGGTACTGCATTCTGTGATCAGGCCA GTAACGCTCTCGCCAACCGAGACTTCTCTTGCCTTCTTTCGCGTGGCCGG GGCACCGTGGCTCTCTTCCCTTCCACATCACATCCGCACCCTTGCCTCAT AGTCACAGAGTCAAGCAAGATGAAGCTGATGGTGAGGGACGTGGGGACTA AGAGGATGGTGGTCGAGGTCGAACCTTCCCTAAAGATAGGTGAATTGAAA ACCAAGCTCCAAGCCGAGCACAGTGTTGCTGATCCTGCACGCCAGAAGAT GATTTACAAGGGAAAGGTATTGAAGGACGCCGACACCATCGAGTCCACGG GTGTGACGGAGGCCGACTTCTACGTCTGCATGGTCTCGGCGCCGCCCAAG GTATGTTGTCTAGGACGAGGGAGGGGGAGCGGGGAGGGAACTGAAACGGA GAGGAGGAATGGGGAAGGCCTCGCCTGGCCACACACTTAGAGTCAAGACA CTTGCACGATCTCCTTCTCTCTTATATATACAGCCCAAGCCGACTGTGGT CGCCGCGCCAGCCCCTGCCCAGACAGCGGCCACGGCTGCTTCGACTGCGG ATGCCACGGCGGCTACAGCCACTACAGCAGCCGCGTCGCCCGCTGCTCCA CCCGCTGCGCCTGCATCCGTGGACCCTGATCAAGTGGAGGGTCTGATTTC GATGGGTTTTGCAGAGGCACATGTCCGTGCCGCGTTGGAAGCGACGGGTG GCAACCCAGATGCGGCCTACACGCTGTTGGAGAGCGGGGGCCCCATCCAA CCACCTGCCCCTCCCGCTACGGCTGGTAGTGCCGCTCCTACTGCTAGCGG TGCTCCAGGGGCGATTATGTCTCTGGAAGATCTCCGAGCGTCGCCGCAAT TTGATCAGCTTCGTCGCATGGTTCAGAGTAATCCGAATGCGATTGACCAG GTGTTGGCGGTCATTGGGCAGCAGAGCCCGCAGCTCTTTCAGGTCATTTT GGCGCAACAAGACGCGTTTATTGCAATGATGAACGAACCAATCGAAGGCA CAGAAGCAGTGGGAGCGGGAGCGGGTGCGGGTGCCGCAGGTGCTGGAGCG GGAGGGGCGACGCAAGCGCAAGTGAATCCGTTTGCGGGCCTCGGAGCTAT GGGGATGAGAGGGATGGAAGGAATGGGGGGCGAAAACGGGCCGTCCCCGC AGCAGCTTGCGCAGATGTTGCAGTCCATGCCTGAGGCTCAGAGGAACCAA CTTTTGTCCACGCTTGTGGGGCTGCCGCTTGAGCAAGTGGAACAGTTTAG TGGTCAGCTGATCCAGGCGTTGGCGAGCGGGACGGCGCCGGGCATGCCGG GGGCGGGGGGAGGAGCGATGCCCCCCGGGGCGCAGCGAATTGAGTTGACC GCAGAAGAGGCAGCGAATTTGAACCAGTTGGTGGAGATGGGATTTGAACG GAATGAGGCATTGCAGGTGTTTTTGGCCTGTGACAAGAACTTGGAGATGG CGGCAAGTGTCTTGTTTCAGGAGGCGGAGGCTGGGGGAGGGAGTGGTGGT CCGGGAAGGGGGGAAGGGGGAGAATCGGAGGGAGGGGACTCGGCTGGAAG CGGGGGAGATCGACAGATGTACTGACTTAGTATTTTATTTGTTGATTTGT TCAGAGGGAGGGAGGGAGGGAGGGAGGGGTGTTCGATGTATGAAAGCGAA AGCACTCAGATATTAATGGTTTGGCCACTATGAGCACTTCCTCTTTGTGC TGCGTGCGCACGAAGAAAGTGGAGGAAGTACTGAGGTGGAATGGCCCATA CAGAAGGTCAGGGGCAGAAGATGGAACGTGGGTTGAAATAGAACACGAAG AAAGTGGACTACGAGGATAGAATGTCAAGAAAAAAAGAAAAGACACAAGT AGAAAGATGGTGGATAACAAGGTGACGACGAAGAGGAAGTAGTTGTAGAA GAAGATGGATAACGAAAAGAGGATGGCGGAGCTCAAGTTCAGG
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Coding sequence (CDS) from alignment at chr12:460829..462971-

>NO12G01500.1 ID=NO12G01500.1|Name=NO12G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at chr12:460829..462971- (Nannochloropsis oceanica)
ATGCAGTTTGATTGGACACGGGCCCTTATATGTGACTTTTTGAGCGATCG
ACCGACCGGTACTGCATTCTGTGATCAGGCCAGTAACGCTCTCGCCAACC
GAGACTTCTCTTGCCTTCTTTCGCGTGGCCGGGGCACCGTGGCTCTCTTC
CCTTCCACATCACATCCGCACCCTTGCCTCATAGTCACAGAGTCAAGCAA
GATGAAGCTGATGGTGAGGGACGTGGGGACTAAGAGGATGGTGGTCGAGG
TCGAACCTTCCCTAAAGATAGGTGAATTGAAAACCAAGCTCCAAGCCGAG
CACAGTGTTGCTGATCCTGCACGCCAGAAGATGATTTACAAGGGAAAGGT
ATTGAAGGACGCCGACACCATCGAGTCCACGGGTGTGACGGAGGCCGACT
TCTACGTCTGCATGGTCTCGGCGCCGCCCAAGCCCAAGCCGACTGTGGTC
GCCGCGCCAGCCCCTGCCCAGACAGCGGCCACGGCTGCTTCGACTGCGGA
TGCCACGGCGGCTACAGCCACTACAGCAGCCGCGTCGCCCGCTGCTCCAC
CCGCTGCGCCTGCATCCGTGGACCCTGATCAAGTGGAGGGTCTGATTTCG
ATGGGTTTTGCAGAGGCACATGTCCGTGCCGCGTTGGAAGCGACGGGTGG
CAACCCAGATGCGGCCTACACGCTGTTGGAGAGCGGGGGCCCCATCCAAC
CACCTGCCCCTCCCGCTACGGCTGGTAGTGCCGCTCCTACTGCTAGCGGT
GCTCCAGGGGCGATTATGTCTCTGGAAGATCTCCGAGCGTCGCCGCAATT
TGATCAGCTTCGTCGCATGGTTCAGAGTAATCCGAATGCGATTGACCAGG
TGTTGGCGGTCATTGGGCAGCAGAGCCCGCAGCTCTTTCAGGTCATTTTG
GCGCAACAAGACGCGTTTATTGCAATGATGAACGAACCAATCGAAGGCAC
AGAAGCAGTGGGAGCGGGAGCGGGTGCGGGTGCCGCAGGTGCTGGAGCGG
GAGGGGCGACGCAAGCGCAAGTGAATCCGTTTGCGGGCCTCGGAGCTATG
GGGATGAGAGGGATGGAAGGAATGGGGGGCGAAAACGGGCCGTCCCCGCA
GCAGCTTGCGCAGATGTTGCAGTCCATGCCTGAGGCTCAGAGGAACCAAC
TTTTGTCCACGCTTGTGGGGCTGCCGCTTGAGCAAGTGGAACAGTTTAGT
GGTCAGCTGATCCAGGCGTTGGCGAGCGGGACGGCGCCGGGCATGCCGGG
GGCGGGGGGAGGAGCGATGCCCCCCGGGGCGCAGCGAATTGAGTTGACCG
CAGAAGAGGCAGCGAATTTGAACCAGTTGGTGGAGATGGGATTTGAACGG
AATGAGGCATTGCAGGTGTTTTTGGCCTGTGACAAGAACTTGGAGATGGC
GGCAAGTGTCTTGTTTCAGGAGGCGGAGGCTGGGGGAGGGAGTGGTGGTC
CGGGAAGGGGGGAAGGGGGAGAATCGGAGGGAGGGGACTCGGCTGGAAGC
GGGGGAGATCGACAGATGTACTGA
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Synonyms
Publications