NO12G01250, NO12G01250 (gene) Nannochloropsis oceanica

Overview
NameNO12G01250
Unique NameNO12G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1442
Alignment locationchr12:394899..396340 +

Link to JBrowse

Properties
Property NameValue
DescriptionCS-like domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:394899..396340 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom
Homology
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BLAST of NO12G01250 vs. NCBI_GenBank
Match: EWM25917.1 (CS-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 567.8 bits (1462), Expect = 2.700e-158
Identity = 289/414 (69.81%), Postives = 338/414 (81.64%), Query Frame = 0 
Query:    1 MARLPPHIIIGFAAFSFHVQAFLLPSIFTLTTINRSRA-------LHSQRQGLSGDVIRPYQGSAGNGGDARQQFASSRPEWLAELIMAKESQILRFPYELRRLEWTPEDDEAVDGLLMQGKTEEAHSYFEEKKATSVPMYRQTLRYHWTQTETEIHVGVPVPKAVRGANMHLIVAEDALQLALTDTPSFGVIAGKFAGEIDPSTSGWQLKQKPDGSHSVSMTLKKQTQPGTHSLWYQLMQGEKLATCMQFRGQGGRDGEERYHWNQDLDYMNVFIPIPMEVRGKAVQLTIDAAGKSMELSYP-------VEAGEG-EGGRVRVGGEFSGLVSPDECSWVIDEDEKGVRCVCLSLRKRRREARESTWWSRCFREEENVVPPEMQGSLEEGQEKVREERERYERELNGEDGWGDE 400
            MAR P  ++IG AAF   +QAF + +   L +  R ++       L SQ++GL GDV+RPY  S G   DAR QF+++RP+WLAEL++AKESQILRFP+ELRR EWT EDDEAVD  LM+GK ++A +YFEEKKATSVPMYRQTLRYHWTQTET++HVGVPVPKAVRGAN+HLIVAEDA+Q+ALTDTPSFGVI+GKFAG IDPSTSGWQL QKPDGSH++SMTLKKQ+QPGTH+LWYQL+QGEKL  CM F+G     G+ RYHW+QDLDYMNVFIPIP  VRGK+VQ+TIDAAG+ ME+S+P       V   +G EGGR R+GGE SGLVSPDECSWVIDED +G RCVCLSLRKRRREA ESTWW RCF+EEE+VVPPEMQGSL+EG  + REERER ER L  EDGWG+E
Sbjct:    1 MARRPLFLVIGCAAFP-TLQAFNM-AYHPLASSRRGKSYSTAITRLQSQQRGLLGDVVRPYDNSGGE-TDARLQFSTTRPDWLAELMLAKESQILRFPHELRRFEWTAEDDEAVDEFLMRGKMQDAQAYFEEKKATSVPMYRQTLRYHWTQTETDVHVGVPVPKAVRGANLHLIVAEDAMQVALTDTPSFGVISGKFAGTIDPSTSGWQLVQKPDGSHAISMTLKKQSQPGTHALWYQLLQGEKLGACMLFKGSA---GQGRYHWSQDLDYMNVFIPIPEGVRGKSVQMTIDAAGRCMEVSHPQTSENPEVTGKQGDEGGRQRIGGELSGLVSPDECSWVIDEDGQGQRCVCLSLRKRRREASESTWWPRCFKEEESVVPPEMQGSLDEGLAQAREERERMERALGAEDGWGEE 408
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BLAST of NO12G01250 vs. NCBI_GenBank
Match: CBN80139.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 122.1 bits (305), Expect = 3.900e-24
Identity = 71/237 (29.96%), Postives = 125/237 (52.74%), Query Frame = 0 
Query:   92 YELRRLEWTPEDDEAVDGLLMQGKTEEAHSYFEEKKATSVPMYRQTLRYHWTQTETEIHVGVPVPKAVRGANMHLIVAEDALQLALTDTPSFGVIAGKFAGEIDPSTSGWQLKQKPDGSHSVSMTLKKQTQPGTHSLWYQLMQGEKLATCMQFRGQGGRDGEERYHWNQDLDYMNVFIPIPMEVRGKAVQLTIDAAGKSMELSYPVEAGEGEGGRVRVGGEFSGLVSPDECSWVIDE 329
            YE  +   T +  E +D L     TE  H+         +PM RQ  RY WTQTET   V +P+ KA R  +++L+V +D +Q+A+    SFG I G F G++D  +  +++  + +  + + + + K T PG +  W++L+QGE+ +  ++F+G+       RY W Q+ + + + IP+P +V  +   L +D AG  + +S+             + G+F GL+SP +  W++ E
Sbjct:   23 YERAKKRNTRKRQEDIDRL-----TELRHN------LRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPY-IHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGE-----TPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSF-----SNRPDFEPLEGKFKGLISPLDSVWMLGE 237
The following BLAST results are available for this feature:
BLAST of NO12G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25917.12.700e-15869.81CS-like domain protein [Nannochloropsis gaditana][more]
CBN80139.13.900e-2429.96expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR014ncniR014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010042NSK010042Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G01250.1NO12G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592003gene_5281Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100048g22gene4621Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G01250.1NO12G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G01250 ID=NO12G01250|Name=NO12G01250|organism=Nannochloropsis oceanica|type=gene|length=1442bp
ATGGCAAGACTCCCACCACATATCATCATCGGCTTTGCTGCTTTCTCCTT
CCACGTTCAAGCGTTCCTCTTGCCCTCCATCTTCACCCTCACCACCATCA
ACCGCAGCCGTGCCTTGCACAGCCAGCGACAAGGGTTGTCGGGTGATGTA
ATTAGGCCCTATCAAGGGAGTGCTGGAAATGGTGGAGATGCTCGGCAGCA
GTTTGCATgtgagtgaggagtgagttgggacgattatctataatgagtgg
caatgctaggtagctgcagggctggtactacgagacaatgccatgcacag
aaccaggaatttgagagaagaggtgatattaaattgtagaagcaatgcga
ggtccgtgcaaataaacggtatgagcatcttacccgctcacccgcttacc
gatcatctccctccccttcctacacactatctctcgctcctcaataacag
CTTCCCGGCCTGAATGGCTGGCCGAGTTGATCATGGCGAAAGAAAGTCAA
ATCCTCCGTTTTCCTTACGAGCTCCGCCGTCTCGAATGGACCCCCGAAGA
TGACGAAGCCGTCGACGGGCTGCTAATGCAAGGGAAAACGGAAGAGGCCC
ACTCGTATTTCGAGGAGAAGAAGGCAACAAGCGTGCCTATGTACCGTCAG
ACCCTCCGCTATCACTGGACGCAAACCGAAACTGAAATCCACGTAGGTGT
CCCCGTCCCCAAGGCCGTGCGGGGGGCCAACATGCATTTAATTGTGGCAG
AAGACGCATTACAGTTGGCTCTGACAGACACTCCGTCCTTTGGAGTCATT
GCGGGAAAGTTTGCCGGAGAGATCGACCCTTCTACCTCAGGATGGCAACT
GAAGCAGAAGCCCGATGGCAGCCATTCGGTGTCTATGACACTGAAAAAAC
AGACGCAGCCAGGCACGCATTCTCTGTGGTACCAACTAATGCAGGGGGAG
AAGCTGGCAACCTGTATGCAGTTTAGGGGCCAGGGAGGGAGGGACGGCGA
AGAGAGGTATCATTGGAATCAAGATTTGGACTACATGAATGTTTTCATCC
CGATCCCAATGGAGGTGAGGGGTAAAGCGGTCCAGCTCACGATTGATGCT
GCAGGCAAGAGTATGGAGCTGAGTTATCCCGTGGAGGCGGGAGAGGGAGA
GGGAGGGAGGGTGAGGGTAGGGGGGGAGTTTTCGGGTTTGGTAAGTCCAG
ATGAGTGTTCGTGGGTAATTGATGAGGATGAGAAGGGGGTGCGGTGTGTA
TGCCTTAGTTTGAGAAAGAGGAGGAGGGAGGCACGTGAGTCAACGTGGTG
GTCGAGGTGTTTTAGAGAGGAGGAGAATGTGGTTCCGCCCGAGATGCAAG
GTTCGTTGGAGGAGGGGCAGGAGAAGGTAAGGGAAGAGCGGGAGAGGTAC
GAGAGGGAATTGAATGGGGAGGATGGTTGGGGGGATGAGTAA
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protein sequence of NO12G01250.1

>NO12G01250.1-protein ID=NO12G01250.1-protein|Name=NO12G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MARLPPHIIIGFAAFSFHVQAFLLPSIFTLTTINRSRALHSQRQGLSGDV
IRPYQGSAGNGGDARQQFASSRPEWLAELIMAKESQILRFPYELRRLEWT
PEDDEAVDGLLMQGKTEEAHSYFEEKKATSVPMYRQTLRYHWTQTETEIH
VGVPVPKAVRGANMHLIVAEDALQLALTDTPSFGVIAGKFAGEIDPSTSG
WQLKQKPDGSHSVSMTLKKQTQPGTHSLWYQLMQGEKLATCMQFRGQGGR
DGEERYHWNQDLDYMNVFIPIPMEVRGKAVQLTIDAAGKSMELSYPVEAG
EGEGGRVRVGGEFSGLVSPDECSWVIDEDEKGVRCVCLSLRKRRREARES
TWWSRCFREEENVVPPEMQGSLEEGQEKVREERERYERELNGEDGWGDE*
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Synonyms
Publications