NO12G00990, NO12G00990 (gene) Nannochloropsis oceanica

Overview
NameNO12G00990
Unique NameNO12G00990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1809
Alignment locationchr12:314594..316402 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:314594..316402 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR003ncniR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010013NSK010013Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00990.1NO12G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|665154gene_10878Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00990.1NO12G00990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00990 ID=NO12G00990|Name=NO12G00990|organism=Nannochloropsis oceanica|type=gene|length=1809bp
ATGGCCGCTATGTTTGCCGCCTTCAAGAACAACGGGGGCAACGAGGAAGC
GGAGGAGGAGGTTCAACCCCTAAATCGCTTTCGCACCATGACTCGGCCGC
AGGTCAACCACACCACTAGCGACGACGAAGATGACGATAACGACCTCTAC
GAGCTGAGATTGGACATGCCGCCCATGCCGATCGTGGGCAAGCTCCCCGC
CATTCACGCGGAGCAGCAGCAGCAGCAGCAGCAGCCATTCCCCTCATCCT
CCCCCTTTTCGCCTTCCTTCTTCCTTGCCCCTGCTATCCCGCGTCCGCAG
CGCCGCAACGAGCCTATGAGCTCGGCAAAAATCAATGAGGCGGAAGAGGA
AGGCCAGGCCAGCAAGCGCGTCCGTGGCATGATAGTAGAACATGAGGGGG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGGGGAAGTGCCGGTGGAGATGGGAAAGACC
AGGATCAGGAAAGAGCTGCCATGATGGTAGCGGAAGGCGAAAGGGACGAG
GGTATGGAACAGGAGGAAGATACTCAGGAGGAAGACTCGCCGGAGGAGGA
AGGAATGGAGAAGGAGGGAGAGGAGGAAGAGAAGATGGAAGTGTCCAAGA
CCCGAATGGAGGAGGGGTCAGATCCGATCTCCGCTCCTTCGGCTTTGGCT
ACTTTGAGTAGGAAAGAGGGATGGAAGGAGGGATTGAAGGAGGGAGGAAA
GGTAGAAGTTGTGGCCCGGGTTGCACCTCAGCAGCAGTATCAGCAAATCG
AGAAGCGAAAAGAGGAGGAGAAAGAATGGGTTGGAGGAGAACAGACACAG
CACCAGCAGTACCAGTACCTTCTTCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGAAAGAGAAGCGAGGTCAGCAAGGACAACGAGGACCCGCCC
CTCCGACAAAGAAAACCGAGAAGCAGCAGCAGCAGAAGCAGCAGCAGCAG
CAGCAGCATGAGCAGAAGGTAGAACGAAATATGGAAGAAACGAGGGAGGA
CGGGAAAGAGGACAGGAAGGAGGGAGGGGGGGAGGACGAGTTCGACGGGG
TTTATCGTAGTGAAATTAAGAGGCTCAAGGGGTTGGAAGAGGCGGAGGAA
AAGGTGTCGATGCTGTGGGTGGGTGCGTTGAAAGAAACAATGGACGTGAC
GACGCGGCTGATGAGGAATGATTGTTACGTGCAGCATATTGCGAGGATTG
AGGAACTGAAGGAGTCTGTGAGGGAGGTGCTGGGGCTGTATGGCCTGGAG
GCGGAGGAGCAGGAGGTGGGGGAGGTATGACAGGGGTTGTGTTTGGGTGA
TGTATATATATATATATAGAGAGAGAGAGGGTGGGGGGAAATAGAGAGCG
AGAAAGAGAGGGGGAAACAGAGAAAAGAAAAAACAAAGAGAGAGAGAGAA
AGAAGAAGAAGAAAAGAAGGAGTAGAAGGCTTTGAAAAGATGAGCAAGGA
GAAGATAACGAAGCAGTAAGATGGCGATGATAACAATGGTGAAGATGAAG
AACAAATAGAGGCAAGAGAAGCTCAAGGAGAATGAGAAGAAGAACAAGAA
AAAGAACAATAACAGGAGACCGAAAGGGCCTCGAGCGAGCAGTAGACTGA
TAGGGAATGAAAAGAGAGAATGGAAGGGCAGGGCAGGCAACATCACGTCA
TGGGCTGTGACACGTACATGTGTATATGCTGGTGTTTATCAAAAGAAGGA
CGACGAGTG
back to top

protein sequence of NO12G00990.1

>NO12G00990.1-protein ID=NO12G00990.1-protein|Name=NO12G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MAAMFAAFKNNGGNEEAEEEVQPLNRFRTMTRPQVNHTTSDDEDDDNDLY
ELRLDMPPMPIVGKLPAIHAEQQQQQQQPFPSSSPFSPSFFLAPAIPRPQ
RRNEPMSSAKINEAEEEGQASKRVRGMIVEHEGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGSAGGDGKDQDQERAAMMVAEGERDE
GMEQEEDTQEEDSPEEEGMEKEGEEEEKMEVSKTRMEEGSDPISAPSALA
TLSRKEGWKEGLKEGGKVEVVARVAPQQQYQQIEKRKEEEKEWVGGEQTQ
HQQYQYLLQQQQQQQQQQQQKEKRGQQGQRGPAPPTKKTEKQQQQKQQQQ
QQHEQKVERNMEETREDGKEDRKEGGGEDEFDGVYRSEIKRLKGLEEAEE
KVSMLWVGALKETMDVTTRLMRNDCYVQHIARIEELKESVREVLGLYGLE
AEEQEVGEV*
back to top
Synonyms
Publications