NO12G00920, NO12G00920 (gene) Nannochloropsis oceanica

Overview
NameNO12G00920
Unique NameNO12G00920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1193
Alignment locationchr12:298161..299353 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:298161..299353 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO12G00920 vs. NCBI_GenBank
Match: XP_005854167.1 (hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526] >XP_005854270.1 hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >EKU22088.1 hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >EKU22190.1 hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 282.7 bits (722), Expect = 1.300e-72
Identity = 129/186 (69.35%), Postives = 153/186 (82.26%), Query Frame = 0
Query:  122 MNVGFNDLLLLELPDSFYAIAKTNQGPYSCTEPVRTAYTKKFKSEEVHRYCDFDHYVYYAATDQALLDFVVPCSSCTHVLVTNGDNGYAPSFLEETRRQLTDLAIVAFIHMNRPQIPAIRIGGLDLGAVLMRVNVLDEGRKVFLTSLPVGAGPKEVHDADYWMVSNALDRGFSFSVLKDEVLMYHH 308
            MNVGF+DL L+ELPD+FY   K      +CT+ VRT Y ++F ++EVHRYCDFDHYVYYAATD+AL  FV+PC SCTHVLVTNGDNGYAPSFL+ET RQ  DLAIV F H N+ Q P + +GGLDLGAVLMRV VLD GR++FL+SLPV AGPKEVHDADYWMV NAL+RG SF+V K+++LMYH+
Sbjct:    1 MNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLQETVRQSADLAIVGFTHRNQAQTPVLGVGGLDLGAVLMRVGVLDHGRRLFLSSLPVDAGPKEVHDADYWMVVNALERGLSFAVCKNQLLMYHN 186          
BLAST of NO12G00920 vs. NCBI_GenBank
Match: EWM25935.1 (hypothetical protein Naga_100134g8 [Nannochloropsis gaditana])

HSP 1 Score: 275.4 bits (703), Expect = 2.100e-70
Identity = 141/230 (61.30%), Postives = 167/230 (72.61%), Query Frame = 0
Query:    1 MPPVWGFKPLIAGTLLLILSPIFLMKSFWSGEGGYLGTHRLGRGVDGRKSIPWVPKTDGAPSDPAHVRVVIRTQAREELQLRSLIYSLRAQGQRKKGVQVDFVLVPTEPASLHVYQHLRDEMNVGFNDLLLLELPDSFYAIAKTNQGPYSCTEPVRTAYTKKFKSEEVHRYCDFDHYVYYAATDQALLDFVVPCSSCTHVLVTNGDNGYAPSFLEETRRQLTDLAIVAFI 231
            MPP  GF   +A  L+LI+SP+  M++        LGT  L R  + + SIPWV   +G P +PAHVRVVIRT ARE+LQLRSLIY LRAQ + + G + DFVLVPTEPASL  YQ L +EMNVGF+DL L+ELPD+FY   K      +CT+ VRT Y ++F ++EVHRYCDFDHYVYYAATD+AL  FV+PC SCTHVLVTNGDNGYAPSFL ET RQ  DLAIV  I
Sbjct:    1 MPPPRGFLSFVAVALVLIMSPMLFMRNPAETYMNLLGTRGLRR--EAKMSIPWV--IEGEPREPAHVRVVIRTHAREQLQLRSLIYGLRAQSEGQAGFKADFVLVPTEPASLQTYQRLCNEMNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADLAIVGGI 226          
BLAST of NO12G00920 vs. NCBI_GenBank
Match: EWM29236.1 (hypothetical protein Naga_100119g17 [Nannochloropsis gaditana])

HSP 1 Score: 148.7 bits (374), Expect = 3.000e-32
Identity = 95/268 (35.45%), Postives = 132/268 (49.25%), Query Frame = 0
Query:   66 HVRVVIRTQAREELQLRSLIYSLRAQGQRKKG------VQVDFVLVPTEPASLHV--------YQHLRD----------EMNVGFNDLLLLELPDSFYAIAKTNQGPYSCTEPVRTAYTKKFKSEEVHRYCDFDHYVYYAATDQALLDFVVPCSSCTHVLVTNGDNGYAPSFLEETRRQLTDLAIVAFI-HMNRPQIPAIRIGGLDLGAVL-MRVNVLDEGRKVFLTSLPVGAGPKEVHDADYWMVSNALDRGFSFSVLKDEVLMYHH 308
            HVRV+IR    +E    SLI+++RAQ Q  +         VDF LV TE   L V        ++ +RD           ++    D+ + +   SFYA+A     PY C+      Y  K     V  +CD+D++ YY ATD  +LD +  C+ CTHVLVTN DN Y P FL        DL    FI H  R  +   R G +DLG VL  +  V+  G   F+ SLP  AGP+E HD DYW V   L+ G + + L  +++ +H+
Sbjct:  180 HVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGG--FIASLPPDAGPQETHDNDYWFVHRGLELG-ATTALVHKLMFFHN 444          
BLAST of NO12G00920 vs. NCBI_GenBank
Match: EWM20344.1 (hypothetical protein Naga_100252g10 [Nannochloropsis gaditana])

HSP 1 Score: 99.8 bits (247), Expect = 1.600e-17
Identity = 78/316 (24.68%), Postives = 136/316 (43.04%), Query Frame = 0
Query:   49 KSIPWV-------PKTDGAPSDPAHVRVVIRTQAREELQLRSLIYSLRAQGQRKKG-----VQVDFVLVPTEPASLHVYQHLRDE--MNVG--FNDLLLLELPDSFYAIAKTNQGPYSCTEPVRTAYTKKFKSEEVHRYCDFDHYVYYAATDQALLDFVVPCSSCTHVLVTNGDNGYAPSFLEE----------------------------------TRRQLT-------DLAIVAFIHMNRPQIPAIRIGGLDLGAVLMRVNVLDEGRKVFLTSLPVGAGPKEVHDADYWMVSNALDRGFSFSVLKDEVLMYHH 308
            +S PW+       P    A +   HVR +IR    +   ++ +++SL  Q Q         + +DF LVPTE   + V   +     +N    F  +  L+L  +F+ +A     P+ C++        +     + + C +D++V+Y ATD A+ + +  C+ CTH ++TNGDN Y P++L+E                                  TRR L        D+    F         A  +G +DLG +L    +L   +  F+ SLP G+  ++ H+AD+   + AL  G    V+ +++L +H+
Sbjct:   67 ESKPWLGSQGLRAPSVSNATNIHHHVRFIIRVHHEQADLVKGMVHSLLYQQQLSVSFPYPTLSMDFALVPTEVRGIPVVDSIARYFWLNTAEPFPHVYALDLDQTFFDVAAERAAPFKCSKEEAREVANRAGKAAMIKICRYDNHVFYQATDVAVAE-LCRCTWCTHAVITNGDNCYHPNYLKETLLELDPPSDAQYGTVQERSDSSSGLKGQIRDKKTRRMLAWERGEQWDMVTTDFTTSGILSRGAWGLGFVDLGGILFSKRILMSAQG-FIASLPSGSRAEQAHNADWLFAARALRLGARAHVV-NQLLFFHN 379          
The following BLAST results are available for this feature:
BLAST of NO12G00920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005854167.11.300e-7269.35hypothetical protein NGA_0179802 [Nannochloropsis ... [more]
EWM25935.12.100e-7061.30hypothetical protein Naga_100134g8 [Nannochloropsi... [more]
EWM29236.13.000e-3235.45hypothetical protein Naga_100119g17 [Nannochlorops... [more]
EWM20344.11.600e-1724.68hypothetical protein Naga_100252g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR003ncniR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010002NSK010002Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00920.1NO12G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100134g8gene4592Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00920.1NO12G00920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00920 ID=NO12G00920|Name=NO12G00920|organism=Nannochloropsis oceanica|type=gene|length=1193bp
ATGCCGCCAGTCTGGGGCTTTAAGCCCTTGATAGCGGGCACCCTGCTCCT
CATCCTGTCGCCCATCTTCCTGATGAAGAGCTTTTGGAGCGGCGAAGGCG
GTTACTTGGGGACCCACCGCTTGGGGCGAGGCGTGGACGGGAGGAAATCG
ATTCCGTGGGTTCCTAAAACCGATGgtatgtctcgctaggagtggcaaaa
agtgaagtaacttttatgcctcattcaataaatctcaaatcgcggattcc
tttcttccaccctttcctttcagGCGCTCCTTCGGATCCAGCGCATGTGC
GGGTGGTAATACGGACGCAGGCACGAGAAGAGCTTCAGTTGCGATCACTT
ATTTACAGCCTCCGTGCGCAAGGCCAGAGAAAAAAAGGAGTACAGGTTGA
CTTTGTGTTGGTGCCCACAGAGCCAGCCTCTCTGCATGTGTACCAACATC
TCCGCGATGgtgcgtgcgtgcagctcctctgtgcatgtgtgcaagcgcat
gccccattcctcgtcgcggcggttcaccccaactaaagccccgcctcctc
tttccggccccagctgcgtcattctttctcaccacataaacaaaatacct
ctcactttcttaaaatcatgtaaattacagAAATGAACGTGGGCTTTAAC
GACCTCCTTCTGCTAGAGCTCCCCGACTCCTTCTACGCCATAGCCAAAAC
CAACCAAGGTCCCTATAGCTGCACCGAGCCCGTCCGTACGGCCTACACCA
AAAAATTCAAAAGCGAGGAAGTTCACCGTTATTGCGACTTCGACCACTAC
GTTTACTATGCAGCCACTGATCAAGCTTTGCTAGACTTTGTGGTTCCCTG
CAGTAGTTGTACACATGTTCTGGTCACCAATGGAGACAACGGATATGCCC
CGTCTTTTCTTGAAGAAACTCGACGGCAACTGACCGACCTGGCCATTGTG
GCTTTCATACACATGAATAGACCACAAATACCTGCGATAAGGATAGGAGG
GTTAGATTTGGGAGCGGTTTTGATGCGCGTGAATGTCTTAGATGAAGGGA
GGAAAGTGTTCTTAACGTCGTTGCCGGTGGGCGCGGGGCCCAAGGAAGTG
CACGATGCAGATTATTGGATGGTTTCAAATGCTTTAGACAGGGGGTTCAG
TTTTTCGGTATTGAAGGATGAAGTTTTGATGTACCATCATTGA
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protein sequence of NO12G00920.1

>NO12G00920.1-protein ID=NO12G00920.1-protein|Name=NO12G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MPPVWGFKPLIAGTLLLILSPIFLMKSFWSGEGGYLGTHRLGRGVDGRKS
IPWVPKTDGAPSDPAHVRVVIRTQAREELQLRSLIYSLRAQGQRKKGVQV
DFVLVPTEPASLHVYQHLRDEMNVGFNDLLLLELPDSFYAIAKTNQGPYS
CTEPVRTAYTKKFKSEEVHRYCDFDHYVYYAATDQALLDFVVPCSSCTHV
LVTNGDNGYAPSFLEETRRQLTDLAIVAFIHMNRPQIPAIRIGGLDLGAV
LMRVNVLDEGRKVFLTSLPVGAGPKEVHDADYWMVSNALDRGFSFSVLKD
EVLMYHH*
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Synonyms
Publications