NO12G00830, NO12G00830 (gene) Nannochloropsis oceanica

Overview
NameNO12G00830
Unique NameNO12G00830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1681
Alignment locationchr12:274939..276619 -

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Properties
Property NameValue
DescriptionKe2 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:274939..276619 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016272prefoldin complex
GO:0005575cellular_component
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002777PFD_beta-like
Homology
BLAST of NO12G00830 vs. NCBI_GenBank
Match: XP_005856039.1 (ke2 family protein [Nannochloropsis gaditana CCMP526] >EKU20332.1 ke2 family protein [Nannochloropsis gaditana CCMP526] >EWM25937.1 ke2 family protein [Nannochloropsis gaditana])

HSP 1 Score: 192.6 bits (488), Expect = 7.900e-46
Identity = 104/132 (78.79%), Postives = 119/132 (90.15%), Query Frame = 0
Query:    1 MSAGGIDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEELGSKIMGMQQELQAKTADAARAAAAGALKGVM 133
            MSA  +D+AL  YKALEA+TQELMARRQ+ +QQANENGMVQQEL+ LE+G+NV+KMMGPVLLRVE+EDAKQNV KRL+LIK +MEDFD KIQ KQK+AEELG+KIM MQQELQAKTADAA+AAA  ALKGVM
Sbjct:    1 MSASAMDEALASYKALEADTQELMARRQVTLQQANENGMVQQELDGLEAGENVYKMMGPVLLRVELEDAKQNVAKRLDLIKSTMEDFDQKIQGKQKDAEELGTKIMTMQQELQAKTADAAKAAAQDALKGVM 132          
BLAST of NO12G00830 vs. NCBI_GenBank
Match: GAY01588.1 (Hypothetical protein PINS_009430 [Pythium insidiosum])

HSP 1 Score: 99.0 bits (245), Expect = 1.200e-17
Identity = 59/127 (46.46%), Postives = 82/127 (64.57%), Query Frame = 0
Query:    6 IDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSM-------EDFDGKIQAKQKEAEELGSKIMGMQQELQAKTADAARAAAA 126
            +D  + +Y+AL+ E Q L  +RQ   QQANEN MV+QEL+ LE    V+K++GPVLL+ EV DAK NV+KRLE I   +       E  + KI+ K+K+A E+   I  MQ E+Q + A+AAR+ AA
Sbjct:  278 VDSEMARYRALQEEVQVLATQRQQFAQQANENSMVKQELDLLEDDAKVYKLIGPVLLKQEVGDAKTNVKKRLEFINNELFVLALFAEKVNSKIEQKEKDAVEIRKSIAQMQMEMQRRAAEAARSVAA 404          
BLAST of NO12G00830 vs. NCBI_GenBank
Match: XP_002902745.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55915.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 97.4 bits (241), Expect = 3.500e-17
Identity = 53/120 (44.17%), Postives = 80/120 (66.67%), Query Frame = 0
Query:    6 IDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEELGSKIMGMQQELQAKTADAARAAAA 126
            +D  + +Y+AL+ E Q L  +RQ   QQANEN MV++EL+ L+    V+K++GPVLL+ + ++AK NV KRLE I   +   + KI+AK+KEA  + + I  MQ E+Q + A+AA+ A A
Sbjct:    8 VDTEMARYRALQDEVQVLATQRQTYAQQANENDMVKKELDLLDDEAKVYKLVGPVLLKQDADEAKSNVNKRLEFINNELNKVNSKIEAKEKEAVGIRNNISNMQMEMQKRAAEAAKGAVA 127          
BLAST of NO12G00830 vs. NCBI_GenBank
Match: XP_009533790.1 (hypothetical protein PHYSODRAFT_317994 [Phytophthora sojae] >XP_009540146.1 hypothetical protein PHYSODRAFT_536504 [Phytophthora sojae] >EGZ04401.1 hypothetical protein PHYSODRAFT_536504 [Phytophthora sojae] >EGZ11045.1 hypothetical protein PHYSODRAFT_317994 [Phytophthora sojae])

HSP 1 Score: 96.7 bits (239), Expect = 5.900e-17
Identity = 53/120 (44.17%), Postives = 81/120 (67.50%), Query Frame = 0
Query:    6 IDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEELGSKIMGMQQELQAKTADAARAAAA 126
            ++  + +Y+AL+ E Q L  +RQ   QQANEN MV++EL+ L+    V+K++GPVLL+ +V++AK NV KRLE I   +   + KI+AK+KEA  + + I  MQ E+Q + A+AA+ A A
Sbjct:    8 VEAEMTRYRALQDEVQVLATQRQTYAQQANENDMVKKELDLLDDETKVYKLVGPVLLKQDVDEAKTNVNKRLEFINNELSKVNSKIEAKEKEAIGIRTNISNMQMEMQKRAAEAAKGAVA 127          
BLAST of NO12G00830 vs. NCBI_GenBank
Match: OQS01623.1 (hypothetical protein ACHHYP_00529 [Achlya hypogyna])

HSP 1 Score: 95.9 bits (237), Expect = 1.000e-16
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 0
Query:    7 DDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEELGSKIMGMQQELQAKTADAARAAAAGA 128
            D  +  Y+AL+ E   L  +RQL  QQ NEN MV+QEL+ L+ G  V+K++GPVLL+ +  +AK NV KRLE I+  ME  + K+QAK++EA ++   I  +Q ++Q   A+ A AAAA A
Sbjct:    8 DAEMAAYRALQEEVTVLANQRQLYAQQQNENSMVKQELDLLDDGAKVYKLVGPVLLKQDTAEAKSNVSKRLEFIQNEMEKVEKKLQAKEEEAVKIRQNIASIQMQMQKSAAEGANAAAAQA 128          
BLAST of NO12G00830 vs. NCBI_GenBank
Match: POM70098.1 (Prefoldin subunit 6 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 95.5 bits (236), Expect = 1.300e-16
Identity = 53/120 (44.17%), Postives = 80/120 (66.67%), Query Frame = 0
Query:    6 IDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEELGSKIMGMQQELQAKTADAARAAAA 126
            ++  + +Y+ L+ E Q L  +RQ   QQANEN MV++EL+ L+    V+K++GPVLL+ +VE+AK NV KRLE I   +   + KI+AK+KEA  + + I  MQ E+Q + A+AA+ A A
Sbjct:    8 VEAEMTRYRGLQDEVQVLATQRQTYAQQANENDMVKKELDLLDDEAKVYKLVGPVLLKQDVEEAKSNVNKRLEFINNELSKVNTKIEAKEKEAIGIRTNISNMQMEMQKRAAEAAKGAVA 127          
BLAST of NO12G00830 vs. NCBI_GenBank
Match: CBJ29752.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.1 bits (235), Expect = 1.700e-16
Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 0
Query:    6 IDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEELGSKIMGMQQELQAKTADAARAAAAGA 128
            +D  LKK + +++E Q L A R    QQANENGMV+QEL+ LE    VFK++GPVL++ ++E+AKQNV KRLELI+  M       + KQKE   +G +IM MQ  ++ + A+ AR    GA
Sbjct:   10 VDAELKKLQGVQSELQALAASRSQFYQQANENGMVKQELDLLEDEAPVFKLVGPVLIKQDLEEAKQNVAKRLELIEREMAKVSKAFEEKQKEEAAIGDEIMRMQGGMKERAAEEARKIMEGA 131          
BLAST of NO12G00830 vs. NCBI_GenBank
Match: XP_008915944.1 (hypothetical protein PPTG_19283 [Phytophthora parasitica INRA-310] >ETI54508.1 hypothetical protein F443_02646 [Phytophthora parasitica P1569] >ETK94405.1 hypothetical protein L915_02528 [Phytophthora parasitica] >ETL47781.1 hypothetical protein L916_02500 [Phytophthora parasitica] >ETM00895.1 hypothetical protein L917_02434 [Phytophthora parasitica] >ETM54072.1 hypothetical protein L914_02523 [Phytophthora parasitica] >ETM98706.1 hypothetical protein PPTG_19283 [Phytophthora parasitica INRA-310] >ETO83260.1 hypothetical protein F444_02647 [Phytophthora parasitica P1976] >ETP24339.1 hypothetical protein F441_02608 [Phytophthora parasitica CJ01A1] >ETP52313.1 hypothetical protein F442_02619 [Phytophthora parasitica P10297] >KUF98003.1 hypothetical protein AM588_10007300 [Phytophthora nicotianae] >KUG02164.1 prefoldin subunit 6 [Phytophthora nicotianae])

HSP 1 Score: 95.1 bits (235), Expect = 1.700e-16
Identity = 52/120 (43.33%), Postives = 81/120 (67.50%), Query Frame = 0
Query:    6 IDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEELGSKIMGMQQELQAKTADAARAAAA 126
            ++  + +Y++L+ E Q L  +RQ   QQANEN MV++EL+ L+    V+K++GPVLL+ +V++AK NV KRLE I   +   + KI+AK+KEA  + + I  MQ E+Q + A+AA+ A A
Sbjct:    8 VEAEMTRYRSLQDEVQVLATQRQTYAQQANENDMVKKELDLLDDEAKVYKLVGPVLLKQDVDEAKSNVNKRLEFINNELNKVNTKIEAKEKEAVGIRTNISNMQMEMQKRAAEAAKGAVA 127          
BLAST of NO12G00830 vs. NCBI_GenBank
Match: XP_024575282.1 (prefoldin subunit 6 [Plasmopara halstedii] >CEG38913.1 prefoldin subunit 6 [Plasmopara halstedii])

HSP 1 Score: 94.0 bits (232), Expect = 3.800e-16
Identity = 52/118 (44.07%), Postives = 80/118 (67.80%), Query Frame = 0
Query:    6 IDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEELGSKIMGMQQELQAKTADAARAA 124
            ++  + +Y+AL+ E Q L  +RQ+  QQANEN MV++EL  L+    VFK++GPVLL+ EV++AK NV KRLE I   ++  + KI+ K+KEA  + + I  +Q E+Q + A+AA+ A
Sbjct:    8 VEAEMTRYRALQDEVQVLARQRQMYAQQANENDMVKKELYLLDDEAKVFKLVGPVLLKQEVDEAKSNVNKRLEFINHELKKVNTKIEFKEKEAVSIRANISSLQMEMQKRAAEAAKGA 125          
BLAST of NO12G00830 vs. NCBI_GenBank
Match: OQS06724.1 (hypothetical protein THRCLA_20302 [Thraustotheca clavata])

HSP 1 Score: 93.2 bits (230), Expect = 6.600e-16
Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = 0
Query:    7 DDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEELGSKIMGMQQELQAKTADAARAAAAGA 128
            D  +  Y+AL+ E   L  +RQ+  QQ NEN MV+QEL+ L+    V+K++GPVLL+ +  +AK NV KRLE I+  ME  + K+QAK++EA ++   I  +Q ++Q   A++A AAAA A
Sbjct:    8 DAEMAAYRALQEEVTVLANQRQVYAQQQNENSMVKQELDLLDDNAKVYKLVGPVLLKQDTSEAKSNVSKRLEFIQNEMEKVEKKLQAKEEEAVKIRQNIASIQMQMQKNAAESAEAAAAQA 128          
The following BLAST results are available for this feature:
BLAST of NO12G00830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856039.17.900e-4678.79ke2 family protein [Nannochloropsis gaditana CCMP5... [more]
GAY01588.11.200e-1746.46Hypothetical protein PINS_009430 [Pythium insidios... [more]
XP_002902745.13.500e-1744.17conserved hypothetical protein [Phytophthora infes... [more]
XP_009533790.15.900e-1744.17hypothetical protein PHYSODRAFT_317994 [Phytophtho... [more]
OQS01623.11.000e-1645.45hypothetical protein ACHHYP_00529 [Achlya hypogyna... [more]
POM70098.11.300e-1644.17Prefoldin subunit 6 [Phytophthora palmivora var. p... [more]
CBJ29752.11.700e-1646.72conserved unknown protein [Ectocarpus siliculosus][more]
XP_008915944.11.700e-1643.33hypothetical protein PPTG_19283 [Phytophthora para... [more]
XP_024575282.13.800e-1644.07prefoldin subunit 6 [Plasmopara halstedii] >CEG389... [more]
OQS06724.16.600e-1643.80hypothetical protein THRCLA_20302 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009994NSK009994Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00830.3NO12G00830.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G00830.2NO12G00830.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G00830.1NO12G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610382gene_9992Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100469g4gene4583Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00830.3NO12G00830.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G00830.2NO12G00830.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G00830.1NO12G00830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00830 ID=NO12G00830|Name=NO12G00830|organism=Nannochloropsis oceanica|type=gene|length=1681bp
AGACTCGCGGCCAAGATTTTCATTCGCGAGCTAGGTAGACGACGCACGGG
CAAGAGTTATGAGTGCAGGCGGCATCGATGACGCCCTCAAGAAGTACAAG
GCCCTGGAGGCCGAGACGCAGGAGCTCATGGCCCGGAGGCAACTAGCAAT
GCAGCAAGCAAATGAGAATGGCATGGTGCAGCAGgtaggggagtggggag
aggatgaagggtgggaggatgaagaggaaggagaatgacgaggtatctga
tcatcggacaagatgcacgactttcgttttggaggtcgctgcaagcgatg
gagaggggaggactggagggagagacgggaggacgtatgggaaggaaata
agggacaacggtcttcgatcgagccgtgtttcgactccaagatgtagcgc
tgtgaggcggcttggcttagcagacatatacatggcgagcgggagaggcg
aagggagatgatagaagcactagttgggcaggccgagaagaaaaggacgg
gcaattgtgtttcttttgccgcatggattcaaccgtgtcgaacttacaag
tttctccaccagtgatggtgctaaatggaaatacggatacacctcgacac
tggtgtatctgtggcttggatggctgaagtcgttgccgccatgggcaggt
cttatgaccgtctgttggccagccctataattccttaatccactccctct
ctgagatgactgaagggggtaatagagatgagaagaacgataacgaatcc
aagcacaatttttaaaaggggaaggatgataagaatggaagcacgtggaa
tatcagtcaagccatcacctacaattccgattgtcccttcatcgtccact
cctccacttacacttatgcccagaaaatcacccacgcacaatttgtctga
aattctattcaaccctccttaacctcttcgtactgttattctcaccgcca
cccaaccgcccacaacatgaaaaatacagGAGTTAGAGGCCTTGGAAAGC
GGCGACAACGTCTTTAAAATGATGGGGCCCGTGCTGTTACGTGTGGAGGT
GGAGGACGCCAAGCAAAATGTGGAAAAGCGGTTGGAATTGATCAAGGGCT
CGATgttagttgaagggggaaagagggagagaaggaacgagggatggtgc
aatgggggcaacgcagtagtctacaaatgatctcgtttctcattttttct
cttgtatcattcagGGAGGACTTTGACGGAAAGATTCAGGCCAAGCAAAA
GGAGGCTGAGGAGCTCGGCAGCAAGgtaagctaatcttgtataaaactgt
gaaactacacgtgtacgtgtgcagagtagtgtgcgtgcatctgctttcga
ccaagagttgtgccctgctatcagtcaatctggcttccgcgcatttcgtt
ttgtcttggactggataaaggaggctaccagcgattcactctccactgtc
gtagatgttctcataatctcacaatgccaccctcctttcctccctccttc
ctttcctccctcctcctctctcccttcctagATCATGGGCATGCAACAAG
AATTACAAGCCAAGACAGCCGATGCCGCCCGGGCTGCAGCCGCGGGTGCC
TTGAAAGGGGTCATGGGTTAAAGGAATACAATGCATGCGTGTGTGTTTGC
ATGTGTGGGTGTACAAAGAACCAAAACGCCA
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protein sequence of NO12G00830.3

>NO12G00830.3-protein ID=NO12G00830.3-protein|Name=NO12G00830.3|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MSAGGIDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESG
DNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMLVEGGKRERRNEGWCN
GGNAVVYK*
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protein sequence of NO12G00830.2

>NO12G00830.2-protein ID=NO12G00830.2-protein|Name=NO12G00830.2|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MSAGGIDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESG
DNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMLVEGGKRERRNEGWCN
GGNAVVYK*
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protein sequence of NO12G00830.1

>NO12G00830.1-protein ID=NO12G00830.1-protein|Name=NO12G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MSAGGIDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESG
DNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMEDFDGKIQAKQKEAEE
LGSKIMGMQQELQAKTADAARAAAAGALKGVMG*
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Synonyms
Publications