NO12G00830.3, NO12G00830.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00830.3
Unique NameNO12G00830.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length886
Alignment locationchr12:274939..276619 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:274939..276619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G00830.3 vs.
Match: XP_005856039.1 (ke2 family protein [Nannochloropsis gaditana CCMP526]; EKU20332.1 ke2 family protein [Nannochloropsis gaditana CCMP526]; EWM25937.1 ke2 family protein [Nannochloropsis gaditana])

HSP 1 Score: 125.6 bits (314), Expect = 9.700e-26
Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = 0 
Query:    1 MSAGGIDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESGDNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSM 85
            MSA  +D+AL  YKALEA+TQELMARRQ+ +QQANENGMVQQEL+ LE+G+NV+KMMGPVLLRVE+EDAKQNV KRL+LIK +M
Sbjct:    1 MSASAMDEALASYKALEADTQELMARRQVTLQQANENGMVQQELDGLEAGENVYKMMGPVLLRVELEDAKQNVAKRLDLIKSTM 84
The following BLAST results are available for this feature:
BLAST of NO12G00830.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856039.19.700e-2676.19ke2 family protein [Nannochloropsis gaditana CCMP5... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00830NO12G00830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00830.3NO12G00830.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00830.3.cds1NO12G00830.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00830.3.cds2NO12G00830.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00830.3 ID=NO12G00830.3|Name=NO12G00830.3|organism=Nannochloropsis oceanica|type=mRNA|length=886bp
AGACTCGCGGCCAAGATTTTCATTCGCGAGCTAGGTAGACGACGCACGGG
CAAGAGTTATGAGTGCAGGCGGCATCGATGACGCCCTCAAGAAGTACAAG
GCCCTGGAGGCCGAGACGCAGGAGCTCATGGCCCGGAGGCAACTAGCAAT
GCAGCAAGCAAATGAGAATGGCATGGTGCAGCAGGAGTTAGAGGCCTTGG
AAAGCGGCGACAACGTCTTTAAAATGATGGGGCCCGTGCTGTTACGTGTG
GAGGTGGAGGACGCCAAGCAAAATGTGGAAAAGCGGTTGGAATTGATCAA
GGGCTCGATGTTAGTTGAAGGGGGAAAGAGGGAGAGAAGGAACGAGGGAT
GGTGCAATGGGGGCAACGCAGTAGTCTACAAATGATCTCGTTTCTCATTT
TTTCTCTTGTATCATTCAGGGAGGACTTTGACGGAAAGATTCAGGCCAAG
CAAAAGGAGGCTGAGGAGCTCGGCAGCAAGGTAAGCTAATCTTGTATAAA
ACTGTGAAACTACACGTGTACGTGTGCAGAGTAGTGTGCGTGCATCTGCT
TTCGACCAAGAGTTGTGCCCTGCTATCAGTCAATCTGGCTTCCGCGCATT
TCGTTTTGTCTTGGACTGGATAAAGGAGGCTACCAGCGATTCACTCTCCA
CTGTCGTAGATGTTCTCATAATCTCACAATGCCACCCTCCTTTCCTCCCT
CCTTCCTTTCCTCCCTCCTCCTCTCTCCCTTCCTAGATCATGGGCATGCA
ACAAGAATTACAAGCCAAGACAGCCGATGCCGCCCGGGCTGCAGCCGCGG
GTGCCTTGAAAGGGGTCATGGGTTAAAGGAATACAATGCATGCGTGTGTG
TTTGCATGTGTGGGTGTACAAAGAACCAAAACGCCA
back to top

protein sequence of NO12G00830.3

>NO12G00830.3-protein ID=NO12G00830.3-protein|Name=NO12G00830.3|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MSAGGIDDALKKYKALEAETQELMARRQLAMQQANENGMVQQELEALESG
DNVFKMMGPVLLRVEVEDAKQNVEKRLELIKGSMLVEGGKRERRNEGWCN
GGNAVVYK*
back to top

mRNA from alignment at chr12:274939..276619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00830.3 ID=NO12G00830.3|Name=NO12G00830.3|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp|location=Sequence derived from alignment at chr12:274939..276619- (Nannochloropsis oceanica)
AGACTCGCGGCCAAGATTTTCATTCGCGAGCTAGGTAGACGACGCACGGG
CAAGAGTTATGAGTGCAGGCGGCATCGATGACGCCCTCAAGAAGTACAAG
GCCCTGGAGGCCGAGACGCAGGAGCTCATGGCCCGGAGGCAACTAGCAAT
GCAGCAAGCAAATGAGAATGGCATGGTGCAGCAGGTAGGGGAGTGGGGAG
AGGATGAAGGGTGGGAGGATGAAGAGGAAGGAGAATGACGAGGTATCTGA
TCATCGGACAAGATGCACGACTTTCGTTTTGGAGGTCGCTGCAAGCGATG
GAGAGGGGAGGACTGGAGGGAGAGACGGGAGGACGTATGGGAAGGAAATA
AGGGACAACGGTCTTCGATCGAGCCGTGTTTCGACTCCAAGATGTAGCGC
TGTGAGGCGGCTTGGCTTAGCAGACATATACATGGCGAGCGGGAGAGGCG
AAGGGAGATGATAGAAGCACTAGTTGGGCAGGCCGAGAAGAAAAGGACGG
GCAATTGTGTTTCTTTTGCCGCATGGATTCAACCGTGTCGAACTTACAAG
TTTCTCCACCAGTGATGGTGCTAAATGGAAATACGGATACACCTCGACAC
TGGTGTATCTGTGGCTTGGATGGCTGAAGTCGTTGCCGCCATGGGCAGGT
CTTATGACCGTCTGTTGGCCAGCCCTATAATTCCTTAATCCACTCCCTCT
CTGAGATGACTGAAGGGGGTAATAGAGATGAGAAGAACGATAACGAATCC
AAGCACAATTTTTAAAAGGGGAAGGATGATAAGAATGGAAGCACGTGGAA
TATCAGTCAAGCCATCACCTACAATTCCGATTGTCCCTTCATCGTCCACT
CCTCCACTTACACTTATGCCCAGAAAATCACCCACGCACAATTTGTCTGA
AATTCTATTCAACCCTCCTTAACCTCTTCGTACTGTTATTCTCACCGCCA
CCCAACCGCCCACAACATGAAAAATACAGGAGTTAGAGGCCTTGGAAAGC
GGCGACAACGTCTTTAAAATGATGGGGCCCGTGCTGTTACGTGTGGAGGT
GGAGGACGCCAAGCAAAATGTGGAAAAGCGGTTGGAATTGATCAAGGGCT
CGATGTTAGTTGAAGGGGGAAAGAGGGAGAGAAGGAACGAGGGATGGTGC
AATGGGGGCAACGCAGTAGTCTACAAATGATCTCGTTTCTCATTTTTTCT
CTTGTATCATTCAGGGAGGACTTTGACGGAAAGATTCAGGCCAAGCAAAA
GGAGGCTGAGGAGCTCGGCAGCAAGGTAAGCTAATCTTGTATAAAACTGT
GAAACTACACGTGTACGTGTGCAGAGTAGTGTGCGTGCATCTGCTTTCGA
CCAAGAGTTGTGCCCTGCTATCAGTCAATCTGGCTTCCGCGCATTTCGTT
TTGTCTTGGACTGGATAAAGGAGGCTACCAGCGATTCACTCTCCACTGTC
GTAGATGTTCTCATAATCTCACAATGCCACCCTCCTTTCCTCCCTCCTTC
CTTTCCTCCCTCCTCCTCTCTCCCTTCCTAGATCATGGGCATGCAACAAG
AATTACAAGCCAAGACAGCCGATGCCGCCCGGGCTGCAGCCGCGGGTGCC
TTGAAAGGGGTCATGGGTTAAAGGAATACAATGCATGCGTGTGTGTTTGC
ATGTGTGGGTGTACAAAGAACCAAAACGCCA
back to top

Coding sequence (CDS) from alignment at chr12:274939..276619-

>NO12G00830.3 ID=NO12G00830.3|Name=NO12G00830.3|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at chr12:274939..276619- (Nannochloropsis oceanica)
ATGAGTGCAGGCGGCATCGATGACGCCCTCAAGAAGTACAAGGCCCTGGA
GGCCGAGACGCAGGAGCTCATGGCCCGGAGGCAACTAGCAATGCAGCAAG
CAAATGAGAATGGCATGGTGCAGCAGGAGTTAGAGGCCTTGGAAAGCGGC
GACAACGTCTTTAAAATGATGGGGCCCGTGCTGTTACGTGTGGAGGTGGA
GGACGCCAAGCAAAATGTGGAAAAGCGGTTGGAATTGATCAAGGGCTCGA
TGTTAGTTGAAGGGGGAAAGAGGGAGAGAAGGAACGAGGGATGGTGCAAT
GGGGGCAACGCAGTAGTCTACAAATGA
back to top
Synonyms
Publications