NO12G00600, NO12G00600 (gene) Nannochloropsis oceanica

Overview
NameNO12G00600
Unique NameNO12G00600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1848
Alignment locationchr12:219014..220861 -

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Properties
Property NameValue
DescriptionProtein of unknown function (DUF3464)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:219014..220861 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021855DUF3464
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO12G00600 vs. NCBI_GenBank
Match: XP_005856027.1 (hypothetical protein NGA_0514600 [Nannochloropsis gaditana CCMP526] >EKU20320.1 hypothetical protein NGA_0514600 [Nannochloropsis gaditana CCMP526] >EWM25966.1 Protein of unknown function DUF3464 [Nannochloropsis gaditana])

HSP 1 Score: 309.3 bits (791), Expect = 1.300e-80
Identity = 206/318 (64.78%), Postives = 229/318 (72.01%), Query Frame = 0
Query:    1 MPAASSRGPPAILVPILLILVLLPSFITAFLLPTLPFSSSFFPPSSILQSRRHSSTAPSSFSPLHPPSL--------PFRAAADDNKD----QPPTPKGFAKKQXXXXXXXXXXXXXXXXXXXXXXXEPDNPLAASQASLDELDRLSARQKRSYWEIQAEMEREMDMREIAEYKETQRLLDEGIVGNLPEQISNRMLKRLLPFTFVPVLGGIALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEVEGSFWGFTEFKANVLNLLDSLQKTRREESAKKKLEKYSGTQAPNRAKRRELDRLTK 307
            MPAA SR        +     L P+   AF     P S     PS  LQSRRH    PS+F P +P +L        P  AAA++ +         PKGF +K          XXXXXXXXXXXXXX          ASL ELDRL+ARQK++YWEIQ EMEREMDMREI EYKETQRLLDEG+VG LPE+ISNRMLKRLLPF   PVLGGI LFGF+LYLAKNTEIDVPPAFVAFSTQVPFLAAL GI+YSIMSTSW+PEVEGSFWGFTEFKANVLNLLDSLQKT+REESAK+K+EKYSG++ PNRAKRRELDRL+K
Sbjct:    1 MPAAKSRRSRLSYRCLGAFFALAPAPGAAF----APLSM----PSPFLQSRRH---VPSAFFP-NPSTLPTPFASVFPLHAAAEEQESGQGKSSSGPKGFGRK---TPAQEPSXXXXXXXXXXXXXXXXXXXXXXXXASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYSGSRGPNRAKRRELDRLSK 303          
BLAST of NO12G00600 vs. NCBI_GenBank
Match: CBN78153.1 (all0748 [Ectocarpus siliculosus])

HSP 1 Score: 99.4 bits (246), Expect = 2.100e-17
Identity = 62/172 (36.05%), Postives = 99/172 (57.56%), Query Frame = 0
Query:  132 DRLSARQKRSYWEIQAEMEREMDMREIAEYKETQRLLDEG--IVGNLPEQISNRMLKRLLPFTFVPVLGGIALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEVEGSFWGFTEFKANVLNLLDSLQKTRREESAKKKLEKYSGTQAPNRAKRREL 302
            D++SAR++    E + E ER    +E  +     +   EG    G++PE +SNRML R++PF  +P LGG+ +F     L+   +  +P   VA++TQ PF  ALAGI+Y+IMS SWD + EG+F+GF E K N  N+++ L+++      +  L       + NR +RR++
Sbjct:  142 DQVSARKEIERMEAE-ERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFVLPALGGVGVFVTVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQE-RMSMNRRQRRQM 311          
BLAST of NO12G00600 vs. NCBI_GenBank
Match: PSC76318.1 (hypothetical protein C2E20_0864 [Micractinium conductrix])

HSP 1 Score: 95.1 bits (235), Expect = 4.000e-16
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 0
Query:  166 RLLDEGIVGNLPEQISNRMLKRLLPFTFVPVLGGIALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEVEGSFWGFTEFKANVLNLLDSLQK 274
            R ++ G    +PE +++RMLKR++ F   PV GGI LF FF +L    EID+P      S+ + F   L GISY IMS SWDP  EGS  G+TEF+ANV  L+D  ++
Sbjct:  111 RNVEYGSTAAVPEVVTDRMLKRVILFMGTPVFGGIMLFPFFYWLKIKQEIDLPNWVAYVSSSLTFGGGLLGISYGIMSASWDPRREGSLLGWTEFQANVPLLMDRFKR 218          
BLAST of NO12G00600 vs. NCBI_GenBank
Match: PRW33988.1 (hypothetical protein C2E21_7297 [Chlorella sorokiniana])

HSP 1 Score: 92.0 bits (227), Expect = 3.300e-15
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 0
Query:  166 RLLDEGIVGNLPEQISNRMLKRLLPFTFVPVLGGIALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEVEGSFWGFTEFKANVLNLLDSLQK 274
            R ++ G    +PE +++RMLKR++ F   PV GGI LF  F YL     +D+P      ++ + F   L GI+Y IMS SWDP  EGS  G+TEF+ANV  LLD  ++
Sbjct:  116 RTVEYGSTAAVPEVVTDRMLKRVIIFMGTPVFGGILLFPLFYYLKVKQGLDLPNWVAYLTSSITFGGGLLGITYGIMSASWDPRREGSLLGWTEFQANVPLLLDRFRR 223          
BLAST of NO12G00600 vs. NCBI_GenBank
Match: XP_005849088.1 (hypothetical protein CHLNCDRAFT_143598 [Chlorella variabilis] >EFN56986.1 hypothetical protein CHLNCDRAFT_143598 [Chlorella variabilis])

HSP 1 Score: 91.7 bits (226), Expect = 4.400e-15
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0
Query:  176 LPEQISNRMLKRLLPFTFVPVLGGIALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEVEGSFWGFTEFKANVLNLLDSLQK 274
            +PE ++NRML+R++ F   PV GGI LF FF +L     +D+P      S+ + F   L GISY IMS SWDP  EGS  G+TEF+ANV  LLD  ++
Sbjct:   96 VPEVVTNRMLRRVILFMGTPVFGGILLFPFFYWLKIKQGVDLPNWVAYLSSSLTFGGGLLGISYGIMSASWDPRREGSLLGWTEFQANVPLLLDRFKR 193          
BLAST of NO12G00600 vs. NCBI_GenBank
Match: XP_002178809.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49507.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 91.7 bits (226), Expect = 4.400e-15
Identity = 58/176 (32.95%), Postives = 92/176 (52.27%), Query Frame = 0
Query:  148 EMEREMDMREIAEYKETQRLLD-----EGIVGNLPEQISNRMLKRLLPFTFVPVLGGIALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEVEGSFWGFTEFKANVLNLLDSLQKTRR------------EESAKKKLEKYSGTQAPNRAKRRELDRLTK 307
            +M R+   ++ AE ++ + LLD     +     +PE+++ RM  R+LPF  +P   G+ +F  F Y+A    ++  PA VA ST V  L  L GI+YSI+S SWDP+ EGS  G  EF  N+ N+ D L+++R              E  +K ++      A ++ + + LDR  K
Sbjct:  109 DMRRQQAEKKDAELRKVRELLDADQQVQEAAAAIPERVAQRMGARMLPFVGLPFFLGMGVFVGFWYMATYRNLEYQPALVAASTIVVLLLGLVGITYSILSASWDPDREGSLLGTDEFSKNIENIRDGLKRSRENAILRDKMAGLTSEELQKSIKDLERRDAASQRREQSLDRKLK 284          
BLAST of NO12G00600 vs. NCBI_GenBank
Match: XP_005849087.1 (hypothetical protein CHLNCDRAFT_57385 [Chlorella variabilis] >EFN56985.1 hypothetical protein CHLNCDRAFT_57385 [Chlorella variabilis])

HSP 1 Score: 91.3 bits (225), Expect = 5.700e-15
Identity = 47/97 (48.45%), Postives = 61/97 (62.89%), Query Frame = 0
Query:  177 PEQISNRMLKRLLPFTFVPVLGGIALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEVEGSFWGFTEFKANVLNLLDSLQK 274
            PE ++NRML+R++ F   PV GGI LF FF +L     +D+P      S+ + F   L GISY IMS SWDP  EGS  G+TEF+ANV  LLD  ++
Sbjct:  135 PEVVTNRMLRRVILFMGTPVFGGILLFPFFYWLKIKQGVDLPNWVAYLSSSLTFGGGLLGISYGIMSASWDPRREGSLLGWTEFQANVPLLLDRFKR 231          
BLAST of NO12G00600 vs. NCBI_GenBank
Match: KOO23857.1 (hypothetical protein Ctob_003461 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 90.1 bits (222), Expect = 1.300e-14
Identity = 51/126 (40.48%), Postives = 72/126 (57.14%), Query Frame = 0
Query:  174 GNLPEQISNRMLKRLLPFTFVPVLGGIALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEVEGSFWGFTEFKANVLNLLDSLQKTRREESAKKKLEKYSGTQAPNRAKRR 300
            G +PE +S RMLKR++PF  +PV GG+  F  F Y     E+D+PP  VAF+TQ   L + AGI+Y +MSTSWD   EGS  G+     N+ ++    Q+  R   AK+  E+    +A  R  R+
Sbjct:  139 GVMPEVVSQRMLKRVVPFAGLPVFGGLLTFVGFYYANTQLELDLPPQIVAFTTQALLLLSFAGITYGVMSTSWDENEEGSLLGWENVGPNIASMQG--QEMDRIAEAKRDAEESDAEKAGIRMGRK 262          
BLAST of NO12G00600 vs. NCBI_GenBank
Match: XP_002292222.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED90197.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 88.6 bits (218), Expect = 3.700e-14
Identity = 54/137 (39.42%), Postives = 83/137 (60.58%), Query Frame = 0
Query:  150 EREMDMREIAEYKETQRLLDEG-IVGNLPEQISNRMLKRLLPFTFVPVLGGIALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLA-ALAGISYSIMSTSWDPEVEGSFWGFTEFKANVLNLLDSLQKTRREESAKKKL 285
            +R+ +++++ + + T  LL E      +PE+++ RM KR+LPF  VP+ G  A F  F Y A   +++  PA VA ST   FLA  L GI+YS+MS+SWD + EGS  GF EF  NV +L + L +T+     ++K+
Sbjct:   96 QRDAELQKLRDLRATDSLLKEDPNAAAIPEKVAQRMGKRMLPFVGVPLFGTFATFIGFWYAAVYKDMEFQPAIVA-STSFVFLAIGLLGITYSVMSSSWDEDREGSGLGFDEFSKNVDSLKEGLSRTKENALLREKM 231          
BLAST of NO12G00600 vs. NCBI_GenBank
Match: CEM05219.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 87.8 bits (216), Expect = 6.300e-14
Identity = 41/114 (35.96%), Postives = 70/114 (61.40%), Query Frame = 0
Query:  174 GNLPEQISNRMLKRLLPFTFVPVLGGIALF--GFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEVEGSFWGFTEFKANVLNLLDSLQKTRREESAKKKLE 286
            G +PE +S R++ R++PF   P+    + F  GF LY     +  + P+ +A+ TQ  FL AL G+SY I+S+SW+ + EGSFWG  EFK N+  +   +++T ++   ++++E
Sbjct:  117 GTMPEVVSQRIISRIVPFFLTPLAFAFSTFIGGFLLY--SQFDYRIEPSIIAYITQFSFLLALGGVSYGILSSSWEEDREGSFWGADEFKRNIKRVASGVRQTVKDTETRQRME 228          
The following BLAST results are available for this feature:
BLAST of NO12G00600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856027.11.300e-8064.78hypothetical protein NGA_0514600 [Nannochloropsis ... [more]
CBN78153.12.100e-1736.05all0748 [Ectocarpus siliculosus][more]
PSC76318.14.000e-1646.30hypothetical protein C2E20_0864 [Micractinium cond... [more]
PRW33988.13.300e-1543.52hypothetical protein C2E21_7297 [Chlorella sorokin... [more]
XP_005849088.14.400e-1547.96hypothetical protein CHLNCDRAFT_143598 [Chlorella ... [more]
XP_002178809.14.400e-1532.95predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_005849087.15.700e-1548.45hypothetical protein CHLNCDRAFT_57385 [Chlorella v... [more]
KOO23857.11.300e-1440.48hypothetical protein Ctob_003461 [Chrysochromulina... [more]
XP_002292222.13.700e-1439.42predicted protein [Thalassiosira pseudonana CCMP13... [more]
CEM05219.16.300e-1435.96unnamed protein product [Vitrella brassicaformis C... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL128nonsL128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR011ngnoR011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009953NSK009953Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00600.1NO12G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610310gene_9973Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100562g2gene4557Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00600.1NO12G00600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00600 ID=NO12G00600|Name=NO12G00600|organism=Nannochloropsis oceanica|type=gene|length=1848bp
GGGAGGGTGATGCGAAAGAGGAATGAGTGCATCTGGCAGGTTGCGATCCA
AGATGGCTCAAAAAAGCTGTATGAATGCTTGCTCCGCCGAAGTCTCTCCC
TGATCATCCCAATCGTACTACCAAGCCCTAAACACCAGCGCGCTTTTTTG
CTTTGGTAAATCGCCTGCTTGTCCTTCGTGCCGTCGTCACACGATCTGAT
GATCACGCACACAACGGCGATGTGAGATCCCGGGACGCAGAGTCCTGCCG
CGTTTCCCGCGGGTTCGTGCATCCTCGCGATGGCGTTATAGCTGATGCTA
AAGTGATGCCGCCATATCACAGAAAATATTCTGGACTCACTTGTGTGAGA
CAAACCTCAGGGCGCGTGCTTTGGCCTGATGATAAATTGGAACCCGCATA
GGTTCTGAGAGCGCCATACTTGACCTCCTGCCCCTGTATCATTCGCATGT
ATTGACTCACTCATACTCCCCCCCTCCGTTCTTTCCCATCTTCATCATCA
ACTTAGGACTGAGCCAGCATAAACCAGGCCCCTTCTAAACCATGCCAGCC
GCCAGCTCAAGAGGGCCGCCAGCCATTCTTGTCCCAATCCTCCTCATCCT
CGTCCTTCTCCCCTCCTTCATAACCGCCTTTCTCCTCCCCACCTTGCCTT
TCTCCTCCTCCTTCTTCCCCCCTTCTTCTATCCTGCAAAGCAGAAGACAT
TCCTCCACCGCACCCTCGTCGTTCTCACCTCTACACCCCCCTTCCCTACC
CTTCCGTGCCGCCGCTGACGACAACAAGGACCAACCACCCACCCCCAAAG
GCTTCGCCAAGAAGCAACCCAAAAAAGCAGCCCCGTCGTCCTCCCTTCCC
TCCTCTTCCCCCCCCTCCTCCTCTTCAGAAGCAAACGAGCCTGACAACCC
CCTCGCTGCCTCTCAAGCTTCCCTAGACGAGCTAGACCGACTGAGCGCGC
GTCAAAAAAGGTCCTACTGGGAAATCCAAGCGGAAATGGAACGAGAGATG
GACATGCGGGAAATCGCCGAGTACAAAGAAACTCAACGTCTGCTGGATGA
GGGCATTGTGGGTAACTTGCCCGAGCAGATAAGCAATCGGATGCTCAAGA
GGCTGTTACCCTTCACGTTCGTGCCTGTGTTGGGTGGCATAGCACTGTTT
GGCTTCTTTCTGTACCTGGCCAAGAATACGGAGATCGACGTGCCACCCGC
TTTTGTGGCCTTCTCGACGCAGGTGCCCTTCCTGGCGGCCTTGGCAGGCA
TTTCGTATTCGATCATGAGTACGAGCTGGGACCCCGAGgtggggagggag
ggagggagggaaggagggagggagggggagagagcgtgtaaaatatgacg
tagctggagatgtactgtagcactcagcctttaatctttcccgtctttct
tcgtccttcacacttcatcatgtagGTTGAGGGCTCCTTCTGGGGTTTTA
CTGAGTTCAAGGCCAATGTCCTTAACCTCCTGGACTCATTACAAAAGACA
CGAAGGGAGGAGAGTGCGAAGAAAAAGCTGGAGAAGTACAGTGGCACCCA
GGCACCAAACAGAGCGAAGCGAAGGGAACTGGATCGATTGACGAAGTAAA
CATTGGAGAAGGTGTGGTGGTGATGAGGGAGTGAAGACAGAAAGACGGAG
AGTGGGAAGAAGAGGGTAATCAAAAGGGTAGTGGGTTCGAAAGGAAGAAT
GTAGGTGGAATGTGTGTGGTTGCAGGGGGAGGTTTTGTTGTCTTCCGCTT
TTTCAAAATTTACAGAAAAGAAGCACAGATTTAATTATGTTGAAACAGGT
TTGGTCTTCTGCTTCTTTCCGCGCCCACTTTACCCCTTCGGGGGGTTC
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protein sequence of NO12G00600.1

>NO12G00600.1-protein ID=NO12G00600.1-protein|Name=NO12G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MPAASSRGPPAILVPILLILVLLPSFITAFLLPTLPFSSSFFPPSSILQS
RRHSSTAPSSFSPLHPPSLPFRAAADDNKDQPPTPKGFAKKQPKKAAPSS
SLPSSSPPSSSSEANEPDNPLAASQASLDELDRLSARQKRSYWEIQAEME
REMDMREIAEYKETQRLLDEGIVGNLPEQISNRMLKRLLPFTFVPVLGGI
ALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEV
EGSFWGFTEFKANVLNLLDSLQKTRREESAKKKLEKYSGTQAPNRAKRRE
LDRLTK*
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Synonyms
Publications