NO12G00600.1, NO12G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00600.1
Unique NameNO12G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1711
Alignment locationchr12:219014..220861 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:219014..220861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00600.1 vs.
Match: XP_005856027.1 (hypothetical protein NGA_0514600 [Nannochloropsis gaditana CCMP526]; EKU20320.1 hypothetical protein NGA_0514600 [Nannochloropsis gaditana CCMP526]; EWM25966.1 Protein of unknown function DUF3464 [Nannochloropsis gaditana])

HSP 1 Score: 339.3 bits (869), Expect = 1.200e-89
Identity = 208/318 (65.41%), Postives = 236/318 (74.21%), Query Frame = 0 
Query:    1 MPAASSRGPPAILVPILLILVLLPSFITAFLLPTLPFSSSFFPPSSILQSRRHSSTAPSSFSPLHPPSLP--------FRAAADDNKD----QPPTPKGFAKKQPKKAAPSSSLPSSSPPSSSSEANEPDNPLAASQASLDELDRLSARQKRSYWEIQAEMEREMDMREIAEYKETQRLLDEGIVGNLPEQISNRMLKRLLPFTFVPVLGGIALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEVEGSFWGFTEFKANVLNLLDSLQKTRREESAKKKLEKYSGTQAPNRAKRRELDRLTK 307
            MPAA SR        +     L P+   AF     P S     PS  LQSRRH    PS+F P +P +LP          AAA++ +         PKGF +K P +    SS P+S+   SSSE + P NPL+ASQASL ELDRL+ARQK++YWEIQ EMEREMDMREI EYKETQRLLDEG+VG LPE+ISNRMLKRLLPF   PVLGGI LFGF+LYLAKNTEIDVPPAFVAFSTQVPFLAAL GI+YSIMSTSW+PEVEGSFWGFTEFKANVLNLLDSLQKT+REESAK+K+EKYSG++ PNRAKRRELDRL+K
Sbjct:    1 MPAAKSRRSRLSYRCLGAFFALAPAPGAAFA----PLSM----PSPFLQSRRH---VPSAFFP-NPSTLPTPFASVFPLHAAAEEQESGQGKSSSGPKGFGRKTPAQEPSPSSSPAST---SSSEPDGPSNPLSASQASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYSGSRGPNRAKRRELDRLSK 303
The following BLAST results are available for this feature:
BLAST of NO12G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856027.11.200e-8965.41hypothetical protein NGA_0514600 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00600NO12G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00600.1NO12G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00600.1.cds1NO12G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00600.1.cds2NO12G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00600.1 ID=NO12G00600.1|Name=NO12G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp
GGGAGGGTGATGCGAAAGAGGAATGAGTGCATCTGGCAGGTTGCGATCCA
AGATGGCTCAAAAAAGCTGTATGAATGCTTGCTCCGCCGAAGTCTCTCCC
TGATCATCCCAATCGTACTACCAAGCCCTAAACACCAGCGCGCTTTTTTG
CTTTGGTAAATCGCCTGCTTGTCCTTCGTGCCGTCGTCACACGATCTGAT
GATCACGCACACAACGGCGATGTGAGATCCCGGGACGCAGAGTCCTGCCG
CGTTTCCCGCGGGTTCGTGCATCCTCGCGATGGCGTTATAGCTGATGCTA
AAGTGATGCCGCCATATCACAGAAAATATTCTGGACTCACTTGTGTGAGA
CAAACCTCAGGGCGCGTGCTTTGGCCTGATGATAAATTGGAACCCGCATA
GGTTCTGAGAGCGCCATACTTGACCTCCTGCCCCTGTATCATTCGCATGT
ATTGACTCACTCATACTCCCCCCCTCCGTTCTTTCCCATCTTCATCATCA
ACTTAGGACTGAGCCAGCATAAACCAGGCCCCTTCTAAACCATGCCAGCC
GCCAGCTCAAGAGGGCCGCCAGCCATTCTTGTCCCAATCCTCCTCATCCT
CGTCCTTCTCCCCTCCTTCATAACCGCCTTTCTCCTCCCCACCTTGCCTT
TCTCCTCCTCCTTCTTCCCCCCTTCTTCTATCCTGCAAAGCAGAAGACAT
TCCTCCACCGCACCCTCGTCGTTCTCACCTCTACACCCCCCTTCCCTACC
CTTCCGTGCCGCCGCTGACGACAACAAGGACCAACCACCCACCCCCAAAG
GCTTCGCCAAGAAGCAACCCAAAAAAGCAGCCCCGTCGTCCTCCCTTCCC
TCCTCTTCCCCCCCCTCCTCCTCTTCAGAAGCAAACGAGCCTGACAACCC
CCTCGCTGCCTCTCAAGCTTCCCTAGACGAGCTAGACCGACTGAGCGCGC
GTCAAAAAAGGTCCTACTGGGAAATCCAAGCGGAAATGGAACGAGAGATG
GACATGCGGGAAATCGCCGAGTACAAAGAAACTCAACGTCTGCTGGATGA
GGGCATTGTGGGTAACTTGCCCGAGCAGATAAGCAATCGGATGCTCAAGA
GGCTGTTACCCTTCACGTTCGTGCCTGTGTTGGGTGGCATAGCACTGTTT
GGCTTCTTTCTGTACCTGGCCAAGAATACGGAGATCGACGTGCCACCCGC
TTTTGTGGCCTTCTCGACGCAGGTGCCCTTCCTGGCGGCCTTGGCAGGCA
TTTCGTATTCGATCATGAGTACGAGCTGGGACCCCGAGGTTGAGGGCTCC
TTCTGGGGTTTTACTGAGTTCAAGGCCAATGTCCTTAACCTCCTGGACTC
ATTACAAAAGACACGAAGGGAGGAGAGTGCGAAGAAAAAGCTGGAGAAGT
ACAGTGGCACCCAGGCACCAAACAGAGCGAAGCGAAGGGAACTGGATCGA
TTGACGAAGTAAACATTGGAGAAGGTGTGGTGGTGATGAGGGAGTGAAGA
CAGAAAGACGGAGAGTGGGAAGAAGAGGGTAATCAAAAGGGTAGTGGGTT
CGAAAGGAAGAATGTAGGTGGAATGTGTGTGGTTGCAGGGGGAGGTTTTG
TTGTCTTCCGCTTTTTCAAAATTTACAGAAAAGAAGCACAGATTTAATTA
TGTTGAAACAGGTTTGGTCTTCTGCTTCTTTCCGCGCCCACTTTACCCCT
TCGGGGGGTTC
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protein sequence of NO12G00600.1

>NO12G00600.1-protein ID=NO12G00600.1-protein|Name=NO12G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MPAASSRGPPAILVPILLILVLLPSFITAFLLPTLPFSSSFFPPSSILQS
RRHSSTAPSSFSPLHPPSLPFRAAADDNKDQPPTPKGFAKKQPKKAAPSS
SLPSSSPPSSSSEANEPDNPLAASQASLDELDRLSARQKRSYWEIQAEME
REMDMREIAEYKETQRLLDEGIVGNLPEQISNRMLKRLLPFTFVPVLGGI
ALFGFFLYLAKNTEIDVPPAFVAFSTQVPFLAALAGISYSIMSTSWDPEV
EGSFWGFTEFKANVLNLLDSLQKTRREESAKKKLEKYSGTQAPNRAKRRE
LDRLTK*
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mRNA from alignment at chr12:219014..220861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00600.1 ID=NO12G00600.1|Name=NO12G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp|location=Sequence derived from alignment at chr12:219014..220861- (Nannochloropsis oceanica)
GGGAGGGTGATGCGAAAGAGGAATGAGTGCATCTGGCAGGTTGCGATCCA
AGATGGCTCAAAAAAGCTGTATGAATGCTTGCTCCGCCGAAGTCTCTCCC
TGATCATCCCAATCGTACTACCAAGCCCTAAACACCAGCGCGCTTTTTTG
CTTTGGTAAATCGCCTGCTTGTCCTTCGTGCCGTCGTCACACGATCTGAT
GATCACGCACACAACGGCGATGTGAGATCCCGGGACGCAGAGTCCTGCCG
CGTTTCCCGCGGGTTCGTGCATCCTCGCGATGGCGTTATAGCTGATGCTA
AAGTGATGCCGCCATATCACAGAAAATATTCTGGACTCACTTGTGTGAGA
CAAACCTCAGGGCGCGTGCTTTGGCCTGATGATAAATTGGAACCCGCATA
GGTTCTGAGAGCGCCATACTTGACCTCCTGCCCCTGTATCATTCGCATGT
ATTGACTCACTCATACTCCCCCCCTCCGTTCTTTCCCATCTTCATCATCA
ACTTAGGACTGAGCCAGCATAAACCAGGCCCCTTCTAAACCATGCCAGCC
GCCAGCTCAAGAGGGCCGCCAGCCATTCTTGTCCCAATCCTCCTCATCCT
CGTCCTTCTCCCCTCCTTCATAACCGCCTTTCTCCTCCCCACCTTGCCTT
TCTCCTCCTCCTTCTTCCCCCCTTCTTCTATCCTGCAAAGCAGAAGACAT
TCCTCCACCGCACCCTCGTCGTTCTCACCTCTACACCCCCCTTCCCTACC
CTTCCGTGCCGCCGCTGACGACAACAAGGACCAACCACCCACCCCCAAAG
GCTTCGCCAAGAAGCAACCCAAAAAAGCAGCCCCGTCGTCCTCCCTTCCC
TCCTCTTCCCCCCCCTCCTCCTCTTCAGAAGCAAACGAGCCTGACAACCC
CCTCGCTGCCTCTCAAGCTTCCCTAGACGAGCTAGACCGACTGAGCGCGC
GTCAAAAAAGGTCCTACTGGGAAATCCAAGCGGAAATGGAACGAGAGATG
GACATGCGGGAAATCGCCGAGTACAAAGAAACTCAACGTCTGCTGGATGA
GGGCATTGTGGGTAACTTGCCCGAGCAGATAAGCAATCGGATGCTCAAGA
GGCTGTTACCCTTCACGTTCGTGCCTGTGTTGGGTGGCATAGCACTGTTT
GGCTTCTTTCTGTACCTGGCCAAGAATACGGAGATCGACGTGCCACCCGC
TTTTGTGGCCTTCTCGACGCAGGTGCCCTTCCTGGCGGCCTTGGCAGGCA
TTTCGTATTCGATCATGAGTACGAGCTGGGACCCCGAGGTGGGGAGGGAG
GGAGGGAGGGAAGGAGGGAGGGAGGGGGAGAGAGCGTGTAAAATATGACG
TAGCTGGAGATGTACTGTAGCACTCAGCCTTTAATCTTTCCCGTCTTTCT
TCGTCCTTCACACTTCATCATGTAGGTTGAGGGCTCCTTCTGGGGTTTTA
CTGAGTTCAAGGCCAATGTCCTTAACCTCCTGGACTCATTACAAAAGACA
CGAAGGGAGGAGAGTGCGAAGAAAAAGCTGGAGAAGTACAGTGGCACCCA
GGCACCAAACAGAGCGAAGCGAAGGGAACTGGATCGATTGACGAAGTAAA
CATTGGAGAAGGTGTGGTGGTGATGAGGGAGTGAAGACAGAAAGACGGAG
AGTGGGAAGAAGAGGGTAATCAAAAGGGTAGTGGGTTCGAAAGGAAGAAT
GTAGGTGGAATGTGTGTGGTTGCAGGGGGAGGTTTTGTTGTCTTCCGCTT
TTTCAAAATTTACAGAAAAGAAGCACAGATTTAATTATGTTGAAACAGGT
TTGGTCTTCTGCTTCTTTCCGCGCCCACTTTACCCCTTCGGGGGGTTC
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Coding sequence (CDS) from alignment at chr12:219014..220861-

>NO12G00600.1 ID=NO12G00600.1|Name=NO12G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr12:219014..220861- (Nannochloropsis oceanica)
ATGCCAGCCGCCAGCTCAAGAGGGCCGCCAGCCATTCTTGTCCCAATCCT
CCTCATCCTCGTCCTTCTCCCCTCCTTCATAACCGCCTTTCTCCTCCCCA
CCTTGCCTTTCTCCTCCTCCTTCTTCCCCCCTTCTTCTATCCTGCAAAGC
AGAAGACATTCCTCCACCGCACCCTCGTCGTTCTCACCTCTACACCCCCC
TTCCCTACCCTTCCGTGCCGCCGCTGACGACAACAAGGACCAACCACCCA
CCCCCAAAGGCTTCGCCAAGAAGCAACCCAAAAAAGCAGCCCCGTCGTCC
TCCCTTCCCTCCTCTTCCCCCCCCTCCTCCTCTTCAGAAGCAAACGAGCC
TGACAACCCCCTCGCTGCCTCTCAAGCTTCCCTAGACGAGCTAGACCGAC
TGAGCGCGCGTCAAAAAAGGTCCTACTGGGAAATCCAAGCGGAAATGGAA
CGAGAGATGGACATGCGGGAAATCGCCGAGTACAAAGAAACTCAACGTCT
GCTGGATGAGGGCATTGTGGGTAACTTGCCCGAGCAGATAAGCAATCGGA
TGCTCAAGAGGCTGTTACCCTTCACGTTCGTGCCTGTGTTGGGTGGCATA
GCACTGTTTGGCTTCTTTCTGTACCTGGCCAAGAATACGGAGATCGACGT
GCCACCCGCTTTTGTGGCCTTCTCGACGCAGGTGCCCTTCCTGGCGGCCT
TGGCAGGCATTTCGTATTCGATCATGAGTACGAGCTGGGACCCCGAGGTT
GAGGGCTCCTTCTGGGGTTTTACTGAGTTCAAGGCCAATGTCCTTAACCT
CCTGGACTCATTACAAAAGACACGAAGGGAGGAGAGTGCGAAGAAAAAGC
TGGAGAAGTACAGTGGCACCCAGGCACCAAACAGAGCGAAGCGAAGGGAA
CTGGATCGATTGACGAAGTAA
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Synonyms
Publications