NO12G00480, NO12G00480 (gene) Nannochloropsis oceanica

Overview
NameNO12G00480
Unique NameNO12G00480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length996
Alignment locationchr12:176115..177110 +

Link to JBrowse

Properties
Property NameValue
DescriptionTwist neighbor
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:176115..177110 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR005576RNA_pol_Rpb7_N
Homology
BLAST of NO12G00480 vs. NCBI_GenBank
Match: OQR98094.1 (hypothetical protein ACHHYP_09215 [Achlya hypogyna])

HSP 1 Score: 99.8 bits (247), Expect = 1.700e-17
Identity = 56/163 (34.36%), Postives = 91/163 (55.83%), Query Frame = 0
Query:   41 VIFKLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            ++   +L P  + D ++ +  +L+ +LMKY E   GV+LA   I+      +  I+++ P++HV+V   ALVF P  G  ++  V KV  +H+ LL+ G+FN +IA  DMP  + +      W+   G        AL  +V F VVRVH A G+++++GSMR
Sbjct:    9 LVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCEPVEGVVLAFDGIKL--LNPYGHIINETPYIHVKVATEALVFRPKAGMTLSANVNKVGSSHIGLLLAGVFNVSIAAADMPKGYAHSYSDDAWINEDG-----ATIALESEVSFTVVRVHVAHGVISIEGSMR 164          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: GAX99171.1 (Hypothetical protein PINS_007012 [Pythium insidiosum])

HSP 1 Score: 92.8 bits (229), Expect = 2.100e-15
Identity = 54/160 (33.75%), Postives = 93/160 (58.13%), Query Frame = 0
Query:   45 LALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIR-QPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            ++LLP  + D    +  ++  LLM+Y++   GV+L+  ++R + P+     IL++ P++H +V A ALVF P  G  ++G V K+   HV LL+ G+FN ++A  ++P    YV    E    G +G +    ++GE +  +V RVH A G++A++ SMR
Sbjct:   15 VSLLPCHIGDARLGIDQEMTALLMRYSDKLEGVILSFSNVRLEKPS---GHILNEQPYIHCKVIADALVFQPRVGMTLSGVVNKIGSNHVGLLIAGVFNGSVAASELPKG--YVHNYAEDAWKGADGTT---ISVGETITVKVARVHVAGGMIAIEASMR 166          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: CCA17774.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 87.0 bits (214), Expect = 1.200e-13
Identity = 46/161 (28.57%), Postives = 88/161 (54.66%), Query Frame = 0
Query:   45 LALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAI--YHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            L L P  + D  Q ++ +L+  +M+YNE   GV+L     H+  P    +  I+ D P++H ++ A ALVF P  G ++  ++ K+   H+ +L  G+FN ++A  ++P+ F Y   +  W+     G++     + + V  ++ RV  A G+++++GSM+
Sbjct:   17 LTLSPCHLSDPLQGIQQELNGSVMQYNETLKGVILCFNSIHLGDP----YGHIISDSPYVHCKIIANALVFQPRQGMLLKAQINKIGSNHIGMLFVGVFNGSVAASELPEGFVYNYHKEAWI-----GKNGDTIKVDDVVTVKIQRVRVAGGMISIEGSMK 168          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: XP_008908625.1 (hypothetical protein PPTG_13909 [Phytophthora parasitica INRA-310] >ETI42575.1 hypothetical protein F443_12314 [Phytophthora parasitica P1569] >ETK82593.1 hypothetical protein L915_12034 [Phytophthora parasitica] >ETL35982.1 hypothetical protein L916_11959 [Phytophthora parasitica] >ETM42460.1 hypothetical protein L914_11870 [Phytophthora parasitica] >ETN06123.1 hypothetical protein PPTG_13909 [Phytophthora parasitica INRA-310] >ETO71244.1 hypothetical protein F444_12414 [Phytophthora parasitica P1976] >ETP12291.1 hypothetical protein F441_12298 [Phytophthora parasitica CJ01A1] >KUF84865.1 DNA-directed RNA polymerase I subunit RPA43 [Phytophthora nicotianae])

HSP 1 Score: 85.9 bits (211), Expect = 2.600e-13
Identity = 48/159 (30.19%), Postives = 92/159 (57.86%), Query Frame = 0
Query:   45 LALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            ++L P    D    +   L   LM+Y+E   GV+L+  +++    R + TI++++P++H +V   ALVF P  G ++ G V K+   HV +L  G+FN ++A  ++P  + +   +  W+  G +G S    ++ ++V+ +V+RVH A G++A++ +MR
Sbjct:   15 VSLSPCHAVDARVGIEQDLTEQLMRYSEALQGVVLSFSNVQL--GRPYGTIVNEMPYIHCKVLTDALVFRPKEGMMLRGVVNKIGSNHVGMLFAGVFNGSVAEAELPKGYVHNYAQDCWL--GEDGSS---ISVEDEVEVKVLRVHVAGGMIAIEATMR 166          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: ETP40419.1 (hypothetical protein F442_12230 [Phytophthora parasitica P10297])

HSP 1 Score: 85.9 bits (211), Expect = 2.600e-13
Identity = 48/159 (30.19%), Postives = 92/159 (57.86%), Query Frame = 0
Query:   45 LALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            ++L P    D    +   L   LM+Y+E   GV+L+  +++    R + TI++++P++H +V   ALVF P  G ++ G V K+   HV +L  G+FN ++A  ++P  + +   +  W+  G +G S    ++ ++V+ +V+RVH A G++A++ +MR
Sbjct:   15 VSLSPCHAVDARVGIEQDLTEQLMRYSEALQGVVLSFSNVQL--GRPYGTIVNEMPYIHCKVLTDALVFRPKEGMMLRGVVNKIGSNHVGMLFAGVFNGSVAEAELPKGYVHNYAQDCWL--GEDGSS---ISVEDEVEVKVLRVHVAGGMIAIEATMR 166          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: XP_009493906.1 (hypothetical protein H696_01723 [Fonticula alba] >KCV72328.1 hypothetical protein H696_01723 [Fonticula alba])

HSP 1 Score: 85.5 bits (210), Expect = 3.400e-13
Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = 0
Query:   47 LLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIR------QPPARR----FATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            LLP  M D  + +  +L+ +L+ +++  GG +L+   ++      +P +         I++D PF+HV V A  LVF P  GS + G VIK+    V +LV GLFNA+I  E++   F Y    G +     +  SE   A+G ++ F V R+    G+LA+ GS+R
Sbjct:   28 LLPADMGDPRRGIDQRLNAMLLHHSQHIGGTVLSYSDVQFLDDAGKPASSTKNIVSGRIINDAPFIHVTVRAKFLVFKPKVGSQLVGSVIKIGPDQVGMLVLGLFNASIPTENLGSEFAYDYSEGVY-RKASKSGSEVAIAVGTRLAFSVQRLDTVNGILAMTGSLR 193          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: XP_002505653.1 (predicted protein [Micromonas commoda] >ACO66911.1 predicted protein [Micromonas commoda])

HSP 1 Score: 84.7 bits (208), Expect = 5.800e-13
Identity = 59/169 (34.91%), Postives = 86/169 (50.89%), Query Frame = 0
Query:   42 IFKLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEY----VSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMREKG 207
            +FKL + P AM D     +  L  +LM+++   GGVL++    R   +   A I+H   +  V V   A VF P PG  + G V KV    V +LV G+FNA+++  D+ D F +     S  G W     E   E R A+G++V F V  V E   +L L GS++E+G
Sbjct:   26 VFKLGIHPSAMHDALGGAKELLDGMLMRHHHQLGGVLVSYADARLVGSD--ARIIHQAGYCDVHVRCTARVFCPKPGRKLLGVVNKVGADFVGMLVMGVFNASVSAADISDEFIHNPIDASPGGCW--ESAEDNGEHRIAVGDEVVFVVKAVSEHDDVLHLLGSLKEEG 190          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: XP_013903944.1 (hypothetical protein MNEG_3029 [Monoraphidium neglectum] >KIZ04925.1 hypothetical protein MNEG_3029 [Monoraphidium neglectum])

HSP 1 Score: 84.7 bits (208), Expect = 5.800e-13
Identity = 60/164 (36.59%), Postives = 86/164 (52.44%), Query Frame = 0
Query:   43 FKLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMREKG 207
            F L L P   +D+ + VR +L+  L++Y+ED GGV+LA  +  +    R A +    PFL V V A   +F P PG  + G VIKV   +V LLV G+FNAAI  E +   F+     G WV       +  R  +G  V+F V  V + A L ++ GS+ + G
Sbjct:   26 FTLHLHPSKTQDVIEGVREQLNLGLLRYSEDLGGVVLA--YSNERVTGRMARLHPYFPFLAVAVVARVTLFCPRPGQHLVGRVIKVGTDYVGLLVLGVFNAAIGAERIRREFKCSPEAGCWV---SLRDATHRILVGSYVRFVVDSVLDHASLFSIVGSLLDAG 184          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: GAX82592.1 (hypothetical protein CEUSTIGMA_g10018.t1 [Chlamydomonas eustigma])

HSP 1 Score: 84.0 bits (206), Expect = 9.900e-13
Identity = 48/165 (29.09%), Postives = 88/165 (53.33%), Query Frame = 0
Query:   42 IFKLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHD-LPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMREK 206
            +F + L P  + ++E+ V   L+ LL ++ ED  G ++A   +     ++  T +H   P +H++V A  L+F P  G ++ G+VIK+    V LLV G+FNA+IA + +   F+ V   G W     +   +    +G +V+F+V ++ + +    + GSM +K
Sbjct:   12 VFNVELHPCKLHNVEEGVSEHLNALLFRFQEDLNGFVIAYKDLNIRKTKQ--TFIHPYFPLVHLEVRAKVLLFKPAEGCMLVGKVIKIAADFVGLLVLGVFNASIAADSIRSEFKCVD--GSWT---SKKDKDHVIEVGSEVRFKVTKLQDQSAFFGIFGSMMDK 169          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: ETL89201.1 (hypothetical protein L917_11802 [Phytophthora parasitica])

HSP 1 Score: 83.6 bits (205), Expect = 1.300e-12
Identity = 48/159 (30.19%), Postives = 91/159 (57.23%), Query Frame = 0
Query:   45 LALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            ++L P    D    +   L   LM+Y+E   GV+L+  +++    R   TI++++P++H +V   ALVF P  G ++ G V K+   HV +L  G+FN ++A  ++P  + +   +  W+  G +G S    ++ ++V+ +V+RVH A G++A++ +MR
Sbjct:   15 VSLSPCHAVDARVGIEQDLTEQLMRYSEALQGVVLSFSNVQL--GRPNGTIVNEMPYIHCKVLTDALVFRPKEGMMLRGVVNKIGSNHVGMLFAGVFNGSVAEAELPKGYVHNYAQDCWL--GEDGSS---ISVEDEVEVKVLRVHVAGGMIAIEATMR 166          
The following BLAST results are available for this feature:
BLAST of NO12G00480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR98094.11.700e-1734.36hypothetical protein ACHHYP_09215 [Achlya hypogyna... [more]
GAX99171.12.100e-1533.75Hypothetical protein PINS_007012 [Pythium insidios... [more]
CCA17774.11.200e-1328.57conserved hypothetical protein [Albugo laibachii N... [more]
XP_008908625.12.600e-1330.19hypothetical protein PPTG_13909 [Phytophthora para... [more]
ETP40419.12.600e-1330.19hypothetical protein F442_12230 [Phytophthora para... [more]
XP_009493906.13.400e-1332.93hypothetical protein H696_01723 [Fonticula alba] >... [more]
XP_002505653.15.800e-1334.91predicted protein [Micromonas commoda] >ACO66911.1... [more]
XP_013903944.15.800e-1336.59hypothetical protein MNEG_3029 [Monoraphidium negl... [more]
GAX82592.19.900e-1329.09hypothetical protein CEUSTIGMA_g10018.t1 [Chlamydo... [more]
ETL89201.11.300e-1230.19hypothetical protein L917_11802 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009943NSK009943Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00480.1NO12G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533871gene_9957Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100557g1gene4550Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00480.1NO12G00480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00480 ID=NO12G00480|Name=NO12G00480|organism=Nannochloropsis oceanica|type=gene|length=996bp
ATGCCCAAACGAAGACGGGCACACCATACCAATGGCACCTCCTTCACCAC
CACCACGAGTACCAGCAGCAGCATGCTCGCCTCTTCCGAACCACCACCAA
CACCATTTCAAGAACAACAAGTAATTTTTAAGCTGGCCTTGCTTCCCCAC
GCAATGGAAGACATGGAGCAGCACGTACGCAGCAAGCTGCACACGCTCCT
CATGAAATATAATGAAGACGCCGGCGGGGTTTTGCTCGCAATCTACCATA
TCCGTCAACCGCCTGCGCGTCGGTTTGCGACCATTTTGCATGACCTACCC
TTTTTGCATGTGCAGGTGGAGGCAATGGCTTTGGTGTTCACCCCAACACC
GGGGAGTGTCGTGACAGGGGAGGTTATAAAAGTGACAGGCACGCACGTGG
CATTGTTGGTCTATGGGCTATTTAATGCGGCCATTGCCAGGGAGGATATG
CCGGATGCTTTTGAGTATGTGAGTGGACGGGGGGAGTGGGTGTGTAATGG
AGGAGAAGGAAGGAGTGAGGGAAGGTTCGCTCTGGGGGAGCAGGTGAAAT
TTCGCGTGGTTAGGGTGCACGAGGCGGCGGGGTTGCTCGCTTTGGATGGG
TCGATGCGTGAGAAGGGAGAGGAACCGCGGGAATCGGTGTACGGGCACCA
TCATTATCATCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAAC
AACAGCATGAGGAGGGAGAGGAGGGGGAGAGAGAAGGAGGAGGATGGAGA
TATGGACGTCAAAAAGAGCAGCGGCCGCAATACGAGGAGGATGTGAGAGA
GGAAGAAATACAGCAGCAGATCGGGAAGCGAAAGGCAGGGGGAACTCACG
ATCAAGGCGAGAAGAAGGCAAAGAAGCAGAAGAAGGAAAAGGACGACAGG
GAGGGCCGGGGGAAGGAGACGGACAAGGAGAAGCACAAGTCGAAGAAAAA
GGATAAGAATAGGTCTCGCAACGTAGGGGGAGACAGCAGTGACTAG
back to top

protein sequence of NO12G00480.1

>NO12G00480.1-protein ID=NO12G00480.1-protein|Name=NO12G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MPKRRRAHHTNGTSFTTTTSTSSSMLASSEPPPTPFQEQQVIFKLALLPH
AMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLP
FLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDM
PDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDG
SMREKGEEPRESVYGHHHYHHHHHHHQQQQQQQQQHEEGEEGEREGGGWR
YGRQKEQRPQYEEDVREEEIQQQIGKRKAGGTHDQGEKKAKKQKKEKDDR
EGRGKETDKEKHKSKKKDKNRSRNVGGDSSD*
back to top
Synonyms
Publications