NO12G00480.1, NO12G00480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00480.1
Unique NameNO12G00480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length996
Alignment locationchr12:176115..177110 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:176115..177110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G00480.1 vs.
Match: EWM25972.1 (twist neighbor [Nannochloropsis gaditana])

HSP 1 Score: 213.4 bits (542), Expect = 1.100e-51
Identity = 143/295 (48.47%), Postives = 186/295 (63.05%), Query Frame = 0
Query:    1 MPKRRRAHHTNGTSFTTTTSTSSSMLASSEPPPTPFQEQQVIFKLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMREKGEEPRESVYGHHHYHHHHHHHQQQQQQQQQHEEGEEGEREGGGWRYGRQKEQRPQYEEDVREEEIQQQIGKRKAGGTHDQGEKKAKKQKK 296
            MPKRRR +   G       +     +  S     PFQEQ+V+FKLALLP AM ++E+ +  KLH +LMKYN+D GG+LL +  +R PP+RRFA+++ DLP LHV+VEA +LVFTP PG  +TG VIKVT THVALLVYGLFNAAIAREDMPDA+ +   R  WV  GG    +    LGE+V FRVV VHEAAGL+ALDGS+RE+G EPR  V G               +  +   E EE ER+GG  R G++++ R   EE    ++ ++  GK +A   H +G+ K  K +K
Sbjct:    1 MPKRRRVNQEKGND----VAGEDDKIVPSPVIQVPFQEQRVLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGG----KEVLGLGEEVAFRVVLVHEAAGLIALDGSLREEGGEPRAPVAG-------LREGDGGGKGGEGGREVEEEERKGGAGREGKKRDTRGTAEEGASVKKRKEGTGKAEA-KAHKKGKGKRLKGEK 279          
The following BLAST results are available for this feature:
BLAST of NO12G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25972.11.100e-5148.47twist neighbor [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00480NO12G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00480.1NO12G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00480.1.cds1NO12G00480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00480.1 ID=NO12G00480.1|Name=NO12G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=996bp
ATGCCCAAACGAAGACGGGCACACCATACCAATGGCACCTCCTTCACCAC
CACCACGAGTACCAGCAGCAGCATGCTCGCCTCTTCCGAACCACCACCAA
CACCATTTCAAGAACAACAAGTAATTTTTAAGCTGGCCTTGCTTCCCCAC
GCAATGGAAGACATGGAGCAGCACGTACGCAGCAAGCTGCACACGCTCCT
CATGAAATATAATGAAGACGCCGGCGGGGTTTTGCTCGCAATCTACCATA
TCCGTCAACCGCCTGCGCGTCGGTTTGCGACCATTTTGCATGACCTACCC
TTTTTGCATGTGCAGGTGGAGGCAATGGCTTTGGTGTTCACCCCAACACC
GGGGAGTGTCGTGACAGGGGAGGTTATAAAAGTGACAGGCACGCACGTGG
CATTGTTGGTCTATGGGCTATTTAATGCGGCCATTGCCAGGGAGGATATG
CCGGATGCTTTTGAGTATGTGAGTGGACGGGGGGAGTGGGTGTGTAATGG
AGGAGAAGGAAGGAGTGAGGGAAGGTTCGCTCTGGGGGAGCAGGTGAAAT
TTCGCGTGGTTAGGGTGCACGAGGCGGCGGGGTTGCTCGCTTTGGATGGG
TCGATGCGTGAGAAGGGAGAGGAACCGCGGGAATCGGTGTACGGGCACCA
TCATTATCATCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAAC
AACAGCATGAGGAGGGAGAGGAGGGGGAGAGAGAAGGAGGAGGATGGAGA
TATGGACGTCAAAAAGAGCAGCGGCCGCAATACGAGGAGGATGTGAGAGA
GGAAGAAATACAGCAGCAGATCGGGAAGCGAAAGGCAGGGGGAACTCACG
ATCAAGGCGAGAAGAAGGCAAAGAAGCAGAAGAAGGAAAAGGACGACAGG
GAGGGCCGGGGGAAGGAGACGGACAAGGAGAAGCACAAGTCGAAGAAAAA
GGATAAGAATAGGTCTCGCAACGTAGGGGGAGACAGCAGTGACTAG
back to top

protein sequence of NO12G00480.1

>NO12G00480.1-protein ID=NO12G00480.1-protein|Name=NO12G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MPKRRRAHHTNGTSFTTTTSTSSSMLASSEPPPTPFQEQQVIFKLALLPH
AMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLP
FLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDM
PDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDG
SMREKGEEPRESVYGHHHYHHHHHHHQQQQQQQQQHEEGEEGEREGGGWR
YGRQKEQRPQYEEDVREEEIQQQIGKRKAGGTHDQGEKKAKKQKKEKDDR
EGRGKETDKEKHKSKKKDKNRSRNVGGDSSD*
back to top

mRNA from alignment at chr12:176115..177110+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00480.1 ID=NO12G00480.1|Name=NO12G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=996bp|location=Sequence derived from alignment at chr12:176115..177110+ (Nannochloropsis oceanica)
ATGCCCAAACGAAGACGGGCACACCATACCAATGGCACCTCCTTCACCAC CACCACGAGTACCAGCAGCAGCATGCTCGCCTCTTCCGAACCACCACCAA CACCATTTCAAGAACAACAAGTAATTTTTAAGCTGGCCTTGCTTCCCCAC GCAATGGAAGACATGGAGCAGCACGTACGCAGCAAGCTGCACACGCTCCT CATGAAATATAATGAAGACGCCGGCGGGGTTTTGCTCGCAATCTACCATA TCCGTCAACCGCCTGCGCGTCGGTTTGCGACCATTTTGCATGACCTACCC TTTTTGCATGTGCAGGTGGAGGCAATGGCTTTGGTGTTCACCCCAACACC GGGGAGTGTCGTGACAGGGGAGGTTATAAAAGTGACAGGCACGCACGTGG CATTGTTGGTCTATGGGCTATTTAATGCGGCCATTGCCAGGGAGGATATG CCGGATGCTTTTGAGTATGTGAGTGGACGGGGGGAGTGGGTGTGTAATGG AGGAGAAGGAAGGAGTGAGGGAAGGTTCGCTCTGGGGGAGCAGGTGAAAT TTCGCGTGGTTAGGGTGCACGAGGCGGCGGGGTTGCTCGCTTTGGATGGG TCGATGCGTGAGAAGGGAGAGGAACCGCGGGAATCGGTGTACGGGCACCA TCATTATCATCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAAC AACAGCATGAGGAGGGAGAGGAGGGGGAGAGAGAAGGAGGAGGATGGAGA TATGGACGTCAAAAAGAGCAGCGGCCGCAATACGAGGAGGATGTGAGAGA GGAAGAAATACAGCAGCAGATCGGGAAGCGAAAGGCAGGGGGAACTCACG ATCAAGGCGAGAAGAAGGCAAAGAAGCAGAAGAAGGAAAAGGACGACAGG GAGGGCCGGGGGAAGGAGACGGACAAGGAGAAGCACAAGTCGAAGAAAAA GGATAAGAATAGGTCTCGCAACGTAGGGGGAGACAGCAGTGACTAG
back to top

Coding sequence (CDS) from alignment at chr12:176115..177110+

>NO12G00480.1 ID=NO12G00480.1|Name=NO12G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr12:176115..177110+ (Nannochloropsis oceanica)
ATGCCCAAACGAAGACGGGCACACCATACCAATGGCACCTCCTTCACCAC
CACCACGAGTACCAGCAGCAGCATGCTCGCCTCTTCCGAACCACCACCAA
CACCATTTCAAGAACAACAAGTAATTTTTAAGCTGGCCTTGCTTCCCCAC
GCAATGGAAGACATGGAGCAGCACGTACGCAGCAAGCTGCACACGCTCCT
CATGAAATATAATGAAGACGCCGGCGGGGTTTTGCTCGCAATCTACCATA
TCCGTCAACCGCCTGCGCGTCGGTTTGCGACCATTTTGCATGACCTACCC
TTTTTGCATGTGCAGGTGGAGGCAATGGCTTTGGTGTTCACCCCAACACC
GGGGAGTGTCGTGACAGGGGAGGTTATAAAAGTGACAGGCACGCACGTGG
CATTGTTGGTCTATGGGCTATTTAATGCGGCCATTGCCAGGGAGGATATG
CCGGATGCTTTTGAGTATGTGAGTGGACGGGGGGAGTGGGTGTGTAATGG
AGGAGAAGGAAGGAGTGAGGGAAGGTTCGCTCTGGGGGAGCAGGTGAAAT
TTCGCGTGGTTAGGGTGCACGAGGCGGCGGGGTTGCTCGCTTTGGATGGG
TCGATGCGTGAGAAGGGAGAGGAACCGCGGGAATCGGTGTACGGGCACCA
TCATTATCATCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAAC
AACAGCATGAGGAGGGAGAGGAGGGGGAGAGAGAAGGAGGAGGATGGAGA
TATGGACGTCAAAAAGAGCAGCGGCCGCAATACGAGGAGGATGTGAGAGA
GGAAGAAATACAGCAGCAGATCGGGAAGCGAAAGGCAGGGGGAACTCACG
ATCAAGGCGAGAAGAAGGCAAAGAAGCAGAAGAAGGAAAAGGACGACAGG
GAGGGCCGGGGGAAGGAGACGGACAAGGAGAAGCACAAGTCGAAGAAAAA
GGATAAGAATAGGTCTCGCAACGTAGGGGGAGACAGCAGTGACTAG
back to top
Synonyms
Publications