NO12G00480, NO12G00480 (gene) Nannochloropsis oceanica

Overview
NameNO12G00480
Unique NameNO12G00480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length996
Alignment locationchr12:176115..177110 +

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Properties
Property NameValue
DescriptionTwist neighbor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:176115..177110 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR005576RNA_pol_Rpb7_N
Homology
BLAST of NO12G00480 vs. NCBI_GenBank
Match: EWM25972.1 (twist neighbor [Nannochloropsis gaditana])

HSP 1 Score: 214.5 bits (545), Expect = 4.800e-52
Identity = 110/175 (62.86%), Postives = 134/175 (76.57%), Query Frame = 0
Query:   41 VIFKLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMREKGEEPRESVYG 216
            V+FKLALLP AM ++E+ +  KLH +LMKYN+D GG+LL +  +R PP+RRFA+++ DLP LHV+VEA +LVFTP PG  +TG VIKVT THVALLVYGLFNAAIAREDMPDA+ +   R  WV  GG    +    LGE+V FRVV VHEAAGL+ALDGS+RE+G EPR  V G
Sbjct:   37 VLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGG----KEVLGLGEEVAFRVVLVHEAAGLIALDGSLREEGGEPRAPVAG 207          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: CBJ48455.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.8 bits (299), Expect = 1.600e-23
Identity = 64/159 (40.25%), Postives = 95/159 (59.75%), Query Frame = 0
Query:   45 LALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGR-FALGEQVKFRVVRVHEAAGLLALDGSM 203
            ++LLP  + D+   +R  ++  LM+YNE  GGVLLA+  +      R   I  ++P +H  V+A A VF P PG V+ G V KVT THV +LV G+FNA++A E M + F +     EW  + G     G   A+G  ++F V R+HEAAGL++++GS+
Sbjct:   15 VSLLPSDIGDIYAGIRRNIYQFLMRYNEALGGVLLAVSDLSFGDGAREGRIEDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDMTAREWQRSRGGKHGAGEVIAVGADMQFVVTRMHEAAGLISIEGSL 173          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: XP_009833838.1 (hypothetical protein H257_09342 [Aphanomyces astaci] >ETV76925.1 hypothetical protein H257_09342 [Aphanomyces astaci])

HSP 1 Score: 112.5 bits (280), Expect = 2.600e-21
Identity = 59/163 (36.20%), Postives = 99/163 (60.74%), Query Frame = 0
Query:   41 VIFKLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            ++   +L P+ ++D ++ +  +L+ +LMKY+E   GVLLA   ++      +  I+++ P++HV++ A ALVF PTPG  +T  V KV   H+ LL+ G+FN +IA  +MP  F +      WV     G+     A+ + V+FRV++VH A G++++DGSMR
Sbjct:   12 LVMSCSLAPYHIQDPKKGLEDQLNHMLMKYSEPVQGVLLAFNSLQ--VINPYGHIINETPYIHVRIAADALVFRPTPGMQLTATVNKVGSNHIGLLLAGVFNVSIAATEMPSGFVHNYHEDAWV-----GKDSSAIAVDDAVEFRVLQVHVAHGVISIDGSMR 167          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: XP_008868760.1 (hypothetical protein H310_05728 [Aphanomyces invadans] >ETW02155.1 hypothetical protein H310_05728 [Aphanomyces invadans])

HSP 1 Score: 112.5 bits (280), Expect = 2.600e-21
Identity = 58/163 (35.58%), Postives = 99/163 (60.74%), Query Frame = 0
Query:   41 VIFKLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            ++   +L P+ +++ ++ +  +L+ +LMKY +   GVLLA   ++      +  I+++ P++HV++ A ALVF PTPG  +TG V KV   H+ LL+ G+FN +IA  +MP  F +      W+     G+     A+ + V+FRVV+VH A G++++DGSMR
Sbjct:   12 LVMSCSLAPYHIQNAKKGLEDQLNLMLMKYCDPVQGVLLAFNSLQ--VINPYGHIINETPYIHVRIAADALVFRPTPGMQLTGTVSKVGSNHIGLLLAGVFNVSIAATEMPSGFVHNYHEDAWI-----GQDSSAIAVDDSVEFRVVKVHVAHGVISIDGSMR 167          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: XP_009833837.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV76926.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 111.7 bits (278), Expect = 4.400e-21
Identity = 59/158 (37.34%), Postives = 97/158 (61.39%), Query Frame = 0
Query:   46 ALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            +L P+ ++D ++ +  +L+ +LMKY+E   GVLLA   ++      +  I+++ P++HV++ A ALVF PTPG  +T  V KV   H+ LL+ G+FN +IA  +MP  F +      WV     G+     A+ + V+FRV++VH A G++++DGSMR
Sbjct:    4 SLAPYHIQDPKKGLEDQLNHMLMKYSEPVQGVLLAFNSLQ--VINPYGHIINETPYIHVRIAADALVFRPTPGMQLTATVNKVGSNHIGLLLAGVFNVSIAATEMPSGFVHNYHEDAWV-----GKDSSAIAVDDAVEFRVLQVHVAHGVISIDGSMR 154          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: XP_008868761.1 (hypothetical protein, variant [Aphanomyces invadans] >ETW02156.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 111.7 bits (278), Expect = 4.400e-21
Identity = 58/158 (36.71%), Postives = 97/158 (61.39%), Query Frame = 0
Query:   46 ALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            +L P+ +++ ++ +  +L+ +LMKY +   GVLLA   ++      +  I+++ P++HV++ A ALVF PTPG  +TG V KV   H+ LL+ G+FN +IA  +MP  F +      W+     G+     A+ + V+FRVV+VH A G++++DGSMR
Sbjct:    4 SLAPYHIQNAKKGLEDQLNLMLMKYCDPVQGVLLAFNSLQ--VINPYGHIINETPYIHVRIAADALVFRPTPGMQLTGTVSKVGSNHIGLLLAGVFNVSIAATEMPSGFVHNYHEDAWI-----GQDSSAIAVDDSVEFRVVKVHVAHGVISIDGSMR 154          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: OQR95652.1 (nitroreductase family [Thraustotheca clavata])

HSP 1 Score: 105.5 bits (262), Expect = 3.200e-19
Identity = 57/171 (33.33%), Postives = 100/171 (58.48%), Query Frame = 0
Query:   41 VIFKLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMREKGEEPRE 212
            ++   +L P  ++D ++ +  +L+T+LMKY +   GVLLA   ++      +  I+++ P++H++V A ALVF P  G  ++  V KV   H+ LL+ G+FN +IA ++MP+ + +      WV   G        AL  +V F+V+RVH A G++++DGSMR  G+  ++
Sbjct:    9 LVMSCSLAPCHIQDAKKGLEEQLNTMLMKYCDPVEGVLLAFNSVQL--LNPYGHIINETPYIHIRVAADALVFRPQTGMELSAVVCKVGSNHIGLLLNGVFNVSIASDEMPEGYAHSYSDDAWVNEDG-----ATIALESEVTFQVLRVHVAHGVISIDGSMRLVGKSSKK 172          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: GAQ79885.1 (DNA-dependent RNA polymerase [Klebsormidium nitens])

HSP 1 Score: 104.4 bits (259), Expect = 7.100e-19
Identity = 66/168 (39.29%), Postives = 94/168 (55.95%), Query Frame = 0
Query:   44 KLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDL-PFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMREKGEEPR 211
            ++ + P   ED++  VR  L+TLLM+YNE+ GGV+LA   +      R   IL  L P++H+ + A  LVF P   +V+ G V KV   H+ LL  G FNA+I  +++ DAF+Y      WV    +G S  R A+G +V F V RVH+    L+L GS+   G  PR
Sbjct:   17 RIEMHPSQAEDVKVAVREHLNTLLMRYNEEFGGVVLAYSDV--VLLGRKGRILTTLSPYIHLDLTARLLVFAPAAQNVLAGSVNKVGPAHIGLLALGAFNASIRADEIGDAFQYDPDASAWV----DGSS--RIAVGTEVDFAVDRVHDEGNFLSLSGSLLLPGTGPR 176          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: XP_008614504.1 (hypothetical protein SDRG_10298 [Saprolegnia diclina VS20] >EQC32102.1 hypothetical protein SDRG_10298 [Saprolegnia diclina VS20])

HSP 1 Score: 104.0 bits (258), Expect = 9.200e-19
Identity = 58/163 (35.58%), Postives = 94/163 (57.67%), Query Frame = 0
Query:   41 VIFKLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            ++   +L P  + D ++ +  +L+ +LMKY +   GV+LA   I       +  I+++ P++HV+V A ALVF PTPG  ++  V KV   H+ LL+ G+FN +I   +MPD + +      WV + G         LG +V F V+RVH+A G++++DGSMR
Sbjct:   21 LVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCDPVEGVILAFNAITL--LNPYGHIINETPYIHVRVAADALVFRPTPGMELSAVVNKVGSNHIGLLLAGVFNVSIDAAEMPDGYTHNFHEEAWVGDDGV-----TIELGAEVAFNVLRVHQAYGVISIDGSMR 176          
BLAST of NO12G00480 vs. NCBI_GenBank
Match: XP_012200532.1 (hypothetical protein SPRG_20002 [Saprolegnia parasitica CBS 223.65] >KDO28795.1 hypothetical protein SPRG_20002 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 102.1 bits (253), Expect = 3.500e-18
Identity = 57/163 (34.97%), Postives = 93/163 (57.06%), Query Frame = 0
Query:   41 VIFKLALLPHAMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLPFLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDMPDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDGSMR 204
            ++   +L P  + D ++ +  +L+ +LMKY +   GV+LA   I       +  I+++ P++HV+V A ALVF PTPG  ++  V KV   H+ LL+ G+FN +I   +MPD + +      WV + G          G +V F V+RVH+A G++++DGSMR
Sbjct:    9 LVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCDPVEGVILAFNAITL--LNPYGHIINETPYIHVRVAADALVFRPTPGMQLSAVVNKVGSNHIGLLLAGVFNVSIDSTEMPDGYVHNFQEEAWVGDDGV-----TIEFGAEVAFHVLRVHQAYGVISIDGSMR 164          
The following BLAST results are available for this feature:
BLAST of NO12G00480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25972.14.800e-5262.86twist neighbor [Nannochloropsis gaditana][more]
CBJ48455.11.600e-2340.25conserved unknown protein [Ectocarpus siliculosus][more]
XP_009833838.12.600e-2136.20hypothetical protein H257_09342 [Aphanomyces astac... [more]
XP_008868760.12.600e-2135.58hypothetical protein H310_05728 [Aphanomyces invad... [more]
XP_009833837.14.400e-2137.34hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_008868761.14.400e-2136.71hypothetical protein, variant [Aphanomyces invadan... [more]
OQR95652.13.200e-1933.33nitroreductase family [Thraustotheca clavata][more]
GAQ79885.17.100e-1939.29DNA-dependent RNA polymerase [Klebsormidium nitens... [more]
XP_008614504.19.200e-1935.58hypothetical protein SDRG_10298 [Saprolegnia dicli... [more]
XP_012200532.13.500e-1834.97hypothetical protein SPRG_20002 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR070ncniR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009943NSK009943Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00480.1NO12G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533871gene_9957Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100557g1gene4550Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00480.1NO12G00480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00480 ID=NO12G00480|Name=NO12G00480|organism=Nannochloropsis oceanica|type=gene|length=996bp
ATGCCCAAACGAAGACGGGCACACCATACCAATGGCACCTCCTTCACCAC
CACCACGAGTACCAGCAGCAGCATGCTCGCCTCTTCCGAACCACCACCAA
CACCATTTCAAGAACAACAAGTAATTTTTAAGCTGGCCTTGCTTCCCCAC
GCAATGGAAGACATGGAGCAGCACGTACGCAGCAAGCTGCACACGCTCCT
CATGAAATATAATGAAGACGCCGGCGGGGTTTTGCTCGCAATCTACCATA
TCCGTCAACCGCCTGCGCGTCGGTTTGCGACCATTTTGCATGACCTACCC
TTTTTGCATGTGCAGGTGGAGGCAATGGCTTTGGTGTTCACCCCAACACC
GGGGAGTGTCGTGACAGGGGAGGTTATAAAAGTGACAGGCACGCACGTGG
CATTGTTGGTCTATGGGCTATTTAATGCGGCCATTGCCAGGGAGGATATG
CCGGATGCTTTTGAGTATGTGAGTGGACGGGGGGAGTGGGTGTGTAATGG
AGGAGAAGGAAGGAGTGAGGGAAGGTTCGCTCTGGGGGAGCAGGTGAAAT
TTCGCGTGGTTAGGGTGCACGAGGCGGCGGGGTTGCTCGCTTTGGATGGG
TCGATGCGTGAGAAGGGAGAGGAACCGCGGGAATCGGTGTACGGGCACCA
TCATTATCATCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAAC
AACAGCATGAGGAGGGAGAGGAGGGGGAGAGAGAAGGAGGAGGATGGAGA
TATGGACGTCAAAAAGAGCAGCGGCCGCAATACGAGGAGGATGTGAGAGA
GGAAGAAATACAGCAGCAGATCGGGAAGCGAAAGGCAGGGGGAACTCACG
ATCAAGGCGAGAAGAAGGCAAAGAAGCAGAAGAAGGAAAAGGACGACAGG
GAGGGCCGGGGGAAGGAGACGGACAAGGAGAAGCACAAGTCGAAGAAAAA
GGATAAGAATAGGTCTCGCAACGTAGGGGGAGACAGCAGTGACTAG
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protein sequence of NO12G00480.1

>NO12G00480.1-protein ID=NO12G00480.1-protein|Name=NO12G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MPKRRRAHHTNGTSFTTTTSTSSSMLASSEPPPTPFQEQQVIFKLALLPH
AMEDMEQHVRSKLHTLLMKYNEDAGGVLLAIYHIRQPPARRFATILHDLP
FLHVQVEAMALVFTPTPGSVVTGEVIKVTGTHVALLVYGLFNAAIAREDM
PDAFEYVSGRGEWVCNGGEGRSEGRFALGEQVKFRVVRVHEAAGLLALDG
SMREKGEEPRESVYGHHHYHHHHHHHQQQQQQQQQHEEGEEGEREGGGWR
YGRQKEQRPQYEEDVREEEIQQQIGKRKAGGTHDQGEKKAKKQKKEKDDR
EGRGKETDKEKHKSKKKDKNRSRNVGGDSSD*
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Synonyms
Publications