NO12G00300, NO12G00300 (gene) Nannochloropsis oceanica

Overview
NameNO12G00300
Unique NameNO12G00300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3572
Alignment locationchr12:102894..106465 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:102894..106465 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00300.1NO12G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674546gene_10092Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00300.1NO12G00300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00300 ID=NO12G00300|Name=NO12G00300|organism=Nannochloropsis oceanica|type=gene|length=3572bp
ATATGCTCTGTGCTTGTGGTTTACCTTAGCATCCACCGTCACAAAGACAG
AAAGCGAGCAAGATCTGCCCGAACATATACAATTTTTCTACAATGTCGGT
AATGCGCTGCATCAAGCACTGTGGTTTTTCAGTCTTTTGTGGAGGTCCAT
TTTACACCTCTCATCGGGGGATTGGCCTCGGCCTTTTTGCGGGGCGGGCA
GGGAGTGCCGCACGGCCTCCTCCCACAGCCGAAGCGATCGGAAAATCAAT
TCGTGTACAGGCTTTCGCGCTTGTGTCAGAGGTTAAGCGCAATGCACGAT
CGACATTGGGATCGGCCTGTCCTTGTGGGAGACGTCAATATGTGCCACGC
CACCAGATCCCCAGTGTTGAAGATGTTATGACTGTGCGAAGTGTCAGAAG
CATTTTTCTTCCTTCCCATCGTTTGCTTTCTCACCCTCCTCACGAACCCT
GATCCAACCACGGCGATTGCCGGAAGCATGACGACCCGACTATGAGCGCC
TAATCCAACTGCTTTATTAACACCTCCGGCCAAGCAAGATGAGCAGGGGA
TATCCGATATTAAGCAAATCTCCTCCGGGCAGAGAAGACTATGAAAAGGC
AGGGGACGATGACCAAGAAGGCAAGATGTACGAGGATGACAGCGTCATGG
TAGCCAGCGAAAGCGAAGAGGGGGGCGTAACAGATAGGGACATCCAAGAG
GAGCGGCTGGCTGGCAGCAAGAGGAGAAGAAGCCAATCTCCCTCCCCTGA
CTTCCACTTTTCACACGCCCCCTCGCTCTCCGAAAGCCTGCAAGAGCGGC
TCACCGGTCTCTTCCGCGACACCACCACTCGCTCTGTGGCGATCAACAAG
ACCTACTTCGCTTCCTTTTCGTCATTCTGGCGGCGTTTCGAGGAGGCCCT
CCATCCCTTTTCCCGTCCCCTCGTCCCGTTCTCCATCCCCGAGAGTCTCC
GTCGATGGCTGATCGAGACACCGTCCGTCCATGCACTACTGAGGCACCTG
ACAGAGGGGGAAGAGGAGACAGGGCTGAGGAAAGGATTATCTGCGCGGTG
CCGGACGGCGCTAGCAATCGTGTTGGAGCACCTAGGATTGAGGATGACGC
AGCCCTGGGAAGGAGAGAGAAGGATAGTGTTGCTGCTGGAGAGGTGTGAG
GGGGAAGAAGAAGAAGAGCGACAGGAAGTGCAGCGGAGACGGAAGGTACA
ACAAATCCGGAAGCAATTCAAAGAGATCACTAGTCTCAGTCAATCCCTCA
GCCGCTGGCTTATCCGCCGCGTCTGCGAAAACCGGACTTCAAAAACAGCT
TACCTCTACCTCTGCTGCCTCCGACGCACCCTCCTTGTCCTCGAGCCCTC
CTTCCCCCCCTCCCCTTCCCCCCTCTCCACACCTTCTAGCCTTCAAGCGG
CCTTCCTCCATCCCATGGCCATGCAAGCGCTGCTGGTTTACCACCGGGAG
AAGGAGGAGGCACGGCGTCGAAAAGACCGAGTCGCCGCACAGACCATGTC
CGCACTCACCATCTTGCTGGCCGTGCTGGATCTGCGGGTGGTACAGCTGG
AGAGCTCGGAAGAAAAAAAGCTGGAAGTGGAAGGAAAGGAGGGAGGGAGG
GAAGGGCTGTGGAGGAGTTGGAAAGGGGAGGGAGGGGACAAGGAGGATGA
GACGGAGGAGGAGGAGGGGGAGGAGGAGGGATTGTTGATGTCTCGGAATT
TACAAAGGCGAGGTCCGCGTCGTTTTATCTACCCGTCCCTTCTCCCCTAC
GCTCCCTCCCTGAGCCCCGCCCTCCAATCCGATCTTATCAGCCGCTTCCG
CGATGACACCCGCCGGCTCCGTCACACCAACAACGAATATTTTTCCCACT
TCCATCCATTCTGGCAGAGATTCGAACAGGCTCTCCCTCCCTCCCTTTGT
CCCTTTCCCCCCCTCTCCAGCCGCTGGGCACTTCGTCAGTGGCTGCTCGA
GACGCCGGGCGTACAGGCGACGTTCGTGCGGCTGAGGAAGGACGAGAGGG
AGGGGAGGAGGGAGGGAAGGAGTGAGGGGAGGAGGGAGAAAGGATTGTCG
ACACGGGGGCAGACGTCGGTGGCCATTGTGTTGAAGGGCTTAGGGTTAAA
GTTAATGAAAGACCGGAAAGGAACGAACCAGAGGATTGTGGCTATAGAAG
AGGGGATTAGAGGGGAGGAAGGAAAGGCGATTGGGAGCGAAAGGCAGGAA
GGTAAGAAAAAAGGAAAGGGAAGAGAAAGGGGGGGGGGGGGGGGGGAAGG
AAGGAGAGTACGGGAGCGTCAACAGAAGGCGGACAAGAAGAAACTGGACG
AGGGGGAGGAGGGACGGGAGGACTACGAAATAGCTCGAATCTTGGCTGCA
CGGAGCCTCAAGCCCGTCGCGGTAACGTTGAATGTCTGCAGTAGCGGCAA
CAGCACTGTCACCACCTCTACCACCACCGCAACCAGCAGCAGCAGCTGCT
GCGGCAGTAGCAGCAGTCCCTTTGAATATTATCCTGTTCAAAACAAGCTG
ATGCACATCCAAGACCATCGTCTCGAGCCCCAATGTCCACCGCAGCATTT
CCACCAGCACCAGCACCAGCACCAGCAGCATCAGCACCAATTTCAGCAGC
ATCAGCAACAGCACCAGCAGCATCAGCAACAGCAGGAGGGCTACCACCAT
TTGCTTTCACCGCAGTATCCGCTGAATgtgggcccttcaatgtccttcta
caacggctatccacgctctcatcttcaaagtagccaaggctcaaacagcc
tcatttacgccacccctgtacaccctctaccggctcaccctgaagAGCAA
ATCTTCGAGCAGAAGCAACAGCGACAGTAGCAGCAGCAGCAACAGCAACA
GCAGCAACACCAGCAGAGCCAGCAGAATCAGGCCCTCTCTCTTCCACCCT
CTCACAAGCCTCCCTGCTTCCGTGCAAAGCGCGCCAGCCGCAATTCAAAC
GGTGGCATTCGAAGTCTACTTGAAGCTGCCCTCGGGCACTCCTTACAGCA
GCAGCAGCAGCAGCAAGACCAGCAGCAGCAGCAGCAGCAGCAAGACCAGC
AGCAGCAGCAGCAGCAGCAGCAGCATCAGCAACCACAACAAGAAGGACAC
CAACAGCCGCAACATCAGCAGCAGCAACACTACCAGCACCAGCAGCAATG
CCACCAGCACCAGCAGCAGCAGCAACGGCAGCAGTACAAGCAGCAGCAGT
ACAAGCAGCAGCATTATCAGCAGCAGCATTATCAGCAGCAGCAGCACTAT
CACGATCAGCAGTCAAATgtgcaggaatgcgtcggaaatcggcatcacca
cttgttttcatcacagtacccgtcgaatgaaggctcttcgctgccctcct
acaacagttatccacgctctcatgttcaaagtagccaaggcttaaacagc
ctcgcgtacgtgacccctgtatatcctctaccgcctctccctccggaaaa
gcagATCTTTCAGCAGCAGCAGCAGCAGCAACAACAGCAGCGGCAGCAGC
AGCGTGACCTACATCAGCAGCATTGTGGAGCCGAGTTCCTTCTCCACCTT
TACCAAGGCACAGCACCTCTAG
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protein sequence of NO12G00300.1

>NO12G00300.1-protein ID=NO12G00300.1-protein|Name=NO12G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=910bp
MSRGYPILSKSPPGREDYEKAGDDDQEGKMYEDDSVMVASESEEGGVTDR
DIQEERLAGSKRRRSQSPSPDFHFSHAPSLSESLQERLTGLFRDTTTRSV
AINKTYFASFSSFWRRFEEALHPFSRPLVPFSIPESLRRWLIETPSVHAL
LRHLTEGEEETGLRKGLSARCRTALAIVLEHLGLRMTQPWEGERRIVLLL
ERCEGEEEEERQEVQRRRKVQQIRKQFKEITSLSQSLSRWLIRRVCENRT
SKTAYLYLCCLRRTLLVLEPSFPPSPSPLSTPSSLQAAFLHPMAMQALLV
YHREKEEARRRKDRVAAQTMSALTILLAVLDLRVVQLESSEEKKLEVEGK
EGGREGLWRSWKGEGGDKEDETEEEEGEEEGLLMSRNLQRRGPRRFIYPS
LLPYAPSLSPALQSDLISRFRDDTRRLRHTNNEYFSHFHPFWQRFEQALP
PSLCPFPPLSSRWALRQWLLETPGVQATFVRLRKDEREGRREGRSEGRRE
KGLSTRGQTSVAIVLKGLGLKLMKDRKGTNQRIVAIEEGIRGEEGKAIGS
ERQEGKKKGKGRERGGGGGEGRRVRERQQKADKKKLDEGEEGREDYEIAR
ILAARSLKPVAVTLNVCSSGNSTVTTSTTTATSSSSCCGSSSSPFEYYPV
QNKLMHIQDHRLEPQCPPQHFHQHQHQHQQHQHQFQQHQQQHQQHQQQQE
GYHHLLSPQYPLNSKSSSRSNSDSSSSSNSNSSNTSRASRIRPSLFHPLT
SLPASVQSAPAAIQTVAFEVYLKLPSGTPYSSSSSSKTSSSSSSSKTSSS
SSSSSSISNHNKKDTNSRNISSSNTTSTSSNATSTSSSSNGSSTSSSSTS
SSIISSSIISSSSTITISSQISFSSSSSSNNSSGSSSVTYISSIVEPSSF
STFTKAQHL*
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Synonyms
Publications