NO12G00280, NO12G00280 (gene) Nannochloropsis oceanica

Overview
NameNO12G00280
Unique NameNO12G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1378
Alignment locationchr12:92854..94231 +

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Properties
Property NameValue
DescriptionPeptidyl-prolyl cis-trans isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:92854..94231 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0005515protein binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036020WW_dom_sf
IPR000297PPIase_PpiC
IPR001202WW_dom
Homology
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_002735945.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like [Saccoglossus kowalevskii])

HSP 1 Score: 166.0 bits (419), Expect = 9.800e-38
Identity = 88/161 (54.66%), Postives = 108/161 (67.08%), Query Frame = 0
Query:    3 DLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            D+P GW  R SRS  G+ YY N +T +S WEKPT P    S      HLL KH+ SRRP+SW+++ IT T EEA++ + E R +IV+          + +F ELA  ESDCSSAK GG LG FGRG MQKPFEDA+FAL+VGELS+ V TDSG+HII R A
Sbjct:    4 DVPPGWEVRYSRSNDGKPYYLNLKTKQSQWEKPTSP---ASEMAQASHLLVKHRESRRPASWKEDNITRTKEEALEILKEHRRRIVSG---------EISFAELASTESDCSSAKRGGDLGPFGRGQMQKPFEDATFALKVGELSEPVFTDSGIHIILRTA 152          
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_022321004.1 (putative peptidyl-prolyl cis-trans isomerase dodo [Crassostrea virginica] >XP_022324057.1 putative peptidyl-prolyl cis-trans isomerase dodo [Crassostrea virginica])

HSP 1 Score: 166.0 bits (419), Expect = 9.800e-38
Identity = 91/161 (56.52%), Postives = 109/161 (67.70%), Query Frame = 0
Query:    3 DLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            DLP GW +R SRS G + YY N  T ES W++PT P    S  V   HLL KH++SRRPSSWR++ IT T EEA+K +   R+QIV+          Q  FEELA   SDCSSAK GG LG FGRG MQKPFEDA+++++VGELS+ V TDSGVHII R A
Sbjct:    4 DLPEGWEKRMSRSAGKE-YYLNIHTKESQWDRPTAP-AEKSGMVQCSHLLVKHRDSRRPSSWREDNITRTKEEALKILRGYRDQIVSG---------QATFEELASQFSDCSSAKRGGDLGPFGRGQMQKPFEDATYSMKVGELSEPVDTDSGVHIILRTA 153          
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_017773995.1 (PREDICTED: putative peptidyl-prolyl cis-trans isomerase dodo isoform X2 [Nicrophorus vespilloides])

HSP 1 Score: 165.6 bits (418), Expect = 1.300e-37
Identity = 96/162 (59.26%), Postives = 111/162 (68.52%), Query Frame = 0
Query:    4 LPAGWVQRESRSRGGQIYYFNPETGESVW---EKPTEPTG-GGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFR 162
            LPAGW +R SRS  GQ YY N  T ES W   +KP EP+G  G  QV   HLL KH+ SRRPSSWR++VIT T +EA   V   REQIV     GG A     F ELA+  SDCSSA+ GG LG FGRG+MQKPFE+A+FAL+ GELS+ VS+DSGVHII R
Sbjct:    6 LPAGWEKRLSRST-GQHYYLNVYTKESQWDVPDKPAEPSGSSGPEQVQCSHLLVKHRESRRPSSWREDVITRTKDEAFDLVKSYREQIV-----GGKA----TFSELAQKYSDCSSARRGGDLGPFGRGAMQKPFEEAAFALKPGELSEAVSSDSGVHIILR 157          
BLAST of NO12G00280 vs. NCBI_GenBank
Match: OQR81699.1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting [Thraustotheca clavata])

HSP 1 Score: 165.6 bits (418), Expect = 1.300e-37
Identity = 91/183 (49.73%), Postives = 114/183 (62.30%), Query Frame = 0
Query:    4 LPAGWVQRESRSRGGQIYYFNPETGESVWE-----------------------KPTEPTGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAG-DKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRV 163
            +P GW + ES+SR G++YY N  TGE  W+                       K  +  G  +  VHVLHLL KH  SRRPSSWRQE IT + E A++ +  LR+QIV AG +K     ++  FEELA+VESDCSSAK GG LG FG+G MQ+ FE A+FAL V ELS+ V T+SGVHIIFR+
Sbjct:   14 VPEGWNRVESKSRPGEVYYVNKSTGEKTWKHSEMMSKANGKRKHEGDHKSKHHKEKKAKGSENDTVHVLHLLVKHAESRRPSSWRQETITRSKEVALQRLLGLRDQIVLAGMNKENEHAIRDKFEELAKVESDCSSAKRGGDLGPFGKGKMQQSFEKAAFALAVNELSEPVETESGVHIIFRL 196          
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_023727191.1 (putative peptidyl-prolyl cis-trans isomerase dodo isoform X2 [Cryptotermes secundus])

HSP 1 Score: 165.6 bits (418), Expect = 1.300e-37
Identity = 94/165 (56.97%), Postives = 113/165 (68.48%), Query Frame = 0
Query:    3 DLPAGWVQRESRSRGGQIYYFNPETGESVW---EKPTEP-TGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            +LP+GW +R SRS  GQ YY N  T ES W   EKP EP +  G  QV   HLL KH+NSRRPSSWR++ IT T EEA+  V   REQIV+          + +F ELA+  SDCSSA+ GG LG FGRG+MQ+PFE A+FAL+VGELS+ V+TDSGVHII R A
Sbjct:    5 ELPSGWEKRLSRST-GQHYYLNVYTKESQWDRPEKPAEPVSSSGPDQVQCSHLLVKHQNSRRPSSWREDEITRTKEEALDLVKSYREQIVSG---------RASFAELAQKFSDCSSARRGGDLGPFGRGAMQRPFEQAAFALKVGELSEPVTTDSGVHIILRTA 159          
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_003142408.1 (Pin1-type peptidyl-prolyl cis-trans isomerase [Loa loa] >EFO21661.1 Pin1-type peptidyl-prolyl cis-trans isomerase [Loa loa])

HSP 1 Score: 165.2 bits (417), Expect = 1.700e-37
Identity = 88/166 (53.01%), Postives = 109/166 (65.66%), Query Frame = 0
Query:    1 MSDLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSA---QVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            + +LP GW +R SRS   + YYFN  TG S WE+PT+P     A   +VH  HLL KH  SRRPSSWR +VIT + E+A K +   R+QI  A DK      +    ELA+  SDCSSAK GG LGFF R  MQK FEDA+FAL VG+LS +V TDSG+H+I+R+A
Sbjct:   28 IKELPKGWEKRMSRS-NNRFYYFNVYTGRSQWERPTKPADPAQASLNEVHCAHLLVKHNGSRRPSSWRSDVITRSKEDARKILIGYRKQIEEASDK------KSKLRELAKEFSDCSSAKRGGDLGFFKRRQMQKSFEDAAFALGVGQLSDVVDTDSGLHLIYRIA 186          
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_011443853.1 (PREDICTED: putative peptidyl-prolyl cis-trans isomerase dodo [Crassostrea gigas] >EKC34118.1 Protein dodo [Crassostrea gigas])

HSP 1 Score: 165.2 bits (417), Expect = 1.700e-37
Identity = 90/161 (55.90%), Postives = 109/161 (67.70%), Query Frame = 0
Query:    3 DLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            DLP GW +R SRS G + YY N  T ES W++PT P    +A V   HLL KH++SRRPSSWR+E IT + EEA+K +   R+QI +          Q  FEELA   SDCSSAK GG LG FGRG MQKPFEDA+++++VGELS +V TDSGVHII R A
Sbjct:    4 DLPEGWEKRMSRSAGKE-YYLNQHTKESQWDRPTAP-AEKAAMVQCSHLLVKHRDSRRPSSWREENITRSKEEAIKILKGYRDQITSG---------QATFEELASQFSDCSSAKRGGDLGPFGRGQMQKPFEDATYSMKVGELSDIVDTDSGVHIILRTA 153          
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_014247705.1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like [Cimex lectularius])

HSP 1 Score: 164.9 bits (416), Expect = 2.200e-37
Identity = 93/164 (56.71%), Postives = 108/164 (65.85%), Query Frame = 0
Query:    3 DLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTG---GGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            DLP GW +R SRS  GQ YY N  T ES W++P +P      G  QV   HLL KHK+SRRPSSWR+EVIT T EEA + V   REQI         A  + +F ELA   SDCSSAK GG LG FG G+MQK FE A+FAL+VGELS+ +STDSG+HII R A
Sbjct:    5 DLPPGWEKRLSRST-GQSYYLNVYTKESQWDRPDKPAESGISGPTQVQCSHLLVKHKDSRRPSSWREEVITRTKEEAFELVKGYREQI---------ASGKASFAELASKYSDCSSAKKGGDLGPFGHGAMQKAFEQAAFALKVGELSEPISTDSGIHIIIRTA 158          
BLAST of NO12G00280 vs. NCBI_GenBank
Match: OQR94750.1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like [Achlya hypogyna])

HSP 1 Score: 164.5 bits (415), Expect = 2.800e-37
Identity = 91/183 (49.73%), Postives = 112/183 (61.20%), Query Frame = 0
Query:    4 LPAGWVQRESRSRGGQIYYFNPETGESVW------------------EKPTE------PTGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRV 163
            +P  W + ES+SR G++YY   +TGE  W                  +KP++      P G  S  VHVLHLL KH  SRR SSWRQE IT + + A++ +  LR+QIV AG       ++  FEELA+ ESDCSSAK GG LG FGRG MQ PFE A+FAL V ELS+ V TDSGVHIIFR+
Sbjct:   14 VPPSWTRVESKSRPGEVYYMCKKTGEKTWKYSEMMSKEAGHGKRKREDKPSKKSSSKRPKGDDSETVHVLHLLVKHAESRRASSWRQETITRSKDVALQRLTGLRDQIVLAGINKDHEAVRAKFEELAKTESDCSSAKRGGDLGPFGRGKMQPPFEAAAFALSVHELSEPVETDSGVHIIFRL 196          
BLAST of NO12G00280 vs. NCBI_GenBank
Match: PSN41302.1 (putative peptidyl-prolyl cis-trans isomerase dodo [Blattella germanica])

HSP 1 Score: 164.5 bits (415), Expect = 2.800e-37
Identity = 90/165 (54.55%), Postives = 113/165 (68.48%), Query Frame = 0
Query:    3 DLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEP----TGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            +LP+GW +R SRS  GQ YY N  T ES W++P +P    +  G  QV   HLL KH+NSRRPSSWR+E IT + +EA+  V   REQIV+          + +F ELA+  SDCSSA+ GG LG FGRG+MQ+PFE A+FAL+VGELS+ V+TDSGVHII R A
Sbjct:    5 ELPSGWEKRLSRST-GQHYYLNVYTKESQWDRPDKPAEPVSSSGPDQVQCSHLLVKHQNSRRPSSWREEEITRSKDEALDLVKSYREQIVSG---------RASFAELAQKYSDCSSARRGGDLGPFGRGAMQRPFEQAAFALKVGELSEPVTTDSGVHIILRTA 159          
The following BLAST results are available for this feature:
BLAST of NO12G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002735945.19.800e-3854.66PREDICTED: peptidyl-prolyl cis-trans isomerase NIM... [more]
XP_022321004.19.800e-3856.52putative peptidyl-prolyl cis-trans isomerase dodo ... [more]
XP_017773995.11.300e-3759.26PREDICTED: putative peptidyl-prolyl cis-trans isom... [more]
OQR81699.11.300e-3749.73peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
XP_023727191.11.300e-3756.97putative peptidyl-prolyl cis-trans isomerase dodo ... [more]
XP_003142408.11.700e-3753.01Pin1-type peptidyl-prolyl cis-trans isomerase [Loa... [more]
XP_011443853.11.700e-3755.90PREDICTED: putative peptidyl-prolyl cis-trans isom... [more]
XP_014247705.12.200e-3756.71peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
OQR94750.12.800e-3749.73peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PSN41302.12.800e-3754.55putative peptidyl-prolyl cis-trans isomerase dodo ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009917NSK009917Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00280.1NO12G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609675gene_10090Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00280.1NO12G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00280 ID=NO12G00280|Name=NO12G00280|organism=Nannochloropsis oceanica|type=gene|length=1378bp
ATGTCTGACCTCCCCGCCGGCTGGGTTCAGCGCGgtacgtctttgatctc
gccctcctctcttctttcttgctatcctttccccaactccccttcttcgt
tccctcaatgcgtaaatcacgcccgcagAAAGCAGGTCCCGCGGCGGGCA
GATTTATTATTTTAACCCCGAGACAGGGGAGAGCGTGTGGGAGAAGCCCA
CTGAGCCGACGGGCGGAGGAAGTGCGCAGgtatcgtggtgggatgggatg
gcagcaggggaggagggaggcagggaagtaaaaggggagacccctttccc
cttcaccatttcttgcatattttctcacgccacaaatttaaagggaagcc
cgccatgcaactgctgctgatttcggtcttggacctctgctgtgttatct
tcctatccattgtcttgtctgacacttctccgggaccccccccctctctc
cctccctccggcctcccttcccctcttgcatcagGTCCATGTCCTCCATC
TTCTGAAGAAGCACAAGAATTCTCGTCGGCCTTCCTCCTGGCGGCAGGAG
GTCATCACCTGCACGAACGAGGAGGCCATGAAAGCCGTCTTTGgtgagcg
tttagatactgtgactagagcgaacctctctttccctcccctcccccctt
ccctccctcccttccatgtaccttcgcgaacctcatcacccattgatcct
gcctctttcccacccccacttcgcaacaatagAATTGCGCGAGCAGATCG
TCGCGGCGGGGGACAAGGGAGGGTCGGCGGGGATGCAAAAAGCTTTTGAG
GAGCTCGCGAGGgtaaggaattggatggagggagggagggggggaaggac
gacaggcgggagaatcagggtaatcgatgacccaaacagccctctttaat
ttacttgagaggaggcatgttaattttgccatgcacacataaggaggacg
aatgtaattttgccatgcacgcatgcccacgtgtacagGTGGAGAGTGAC
TGCAGCAGTGCCAAAGCGGGGGGCAGCCTCGGGTTCTTTGGGCGCGGGTC
CATGCAAAAGCCATTTGAAGgtaaagaggaaggggaggaggaagtgggat
gttgatagctccttgttgcttctttgttcatttatttttttattttgcta
cgaggagacatcatctcgcccatttacaagcgatggactcaataatactg
ataataataatgaaaataattgtcccgcctcatccgctctccccctccct
ttctcctccctctctccctttactccccttccctccacgtagACGCCTCC
TTCGCTCTGGAGGTGGGCGAGCTGAGCCAGATGGTCTCTACTGACAGTGG
CGTACACATCATTTTTCGCGTGGCTTAG
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protein sequence of NO12G00280.1

>NO12G00280.1-protein ID=NO12G00280.1-protein|Name=NO12G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MSDLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSAQVHVLH
LLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQ
KAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMV
STDSGVHIIFRVA*
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Synonyms
Publications