NO12G00280.1, NO12G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00280.1
Unique NameNO12G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length492
Alignment locationchr12:92854..94231 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:92854..94231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G00280.1 vs.
Match: XP_005854844.1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Nannochloropsis gaditana CCMP526]; EKU21511.1 peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 235.3 bits (599), Expect = 1.300e-58
Identity = 123/175 (70.29%), Postives = 136/175 (77.71%), Query Frame = 0
Query:    1 MSDLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAV------------FELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            MSD+PAGWVQRESRSRGGQIYY+N  TGESVWEKPT P    S QVHVLHLLKKHK SRRPSSWRQE ITCT EEAM+++              LREQIV+A    GSA MQ+AFE+LA+VESDCSSA+AGGSLGFFGRG MQKPFE       VGELS ++STDSGVHII+RVA
Sbjct:    1 MSDIPAGWVQRESRSRGGQIYYYNTTTGESVWEKPTAPASAESGQVHVLHLLKKHKGSRRPSSWRQENITCTKEEAMQSLAAHNTLAPSPSPTALREQIVSA----GSASMQRAFEDLAKVESDCSSARAGGSLGFFGRGQMQKPFEG------VGELSDLISTDSGVHIIYRVA 165          
The following BLAST results are available for this feature:
BLAST of NO12G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854844.11.300e-5870.29peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00280NO12G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00280.1NO12G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00280.1.cds1NO12G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00280.1.cds2NO12G00280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00280.1.cds3NO12G00280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00280.1.cds4NO12G00280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00280.1.cds5NO12G00280.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00280.1.cds6NO12G00280.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00280.1 ID=NO12G00280.1|Name=NO12G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=492bp
ATGTCTGACCTCCCCGCCGGCTGGGTTCAGCGCGAAAGCAGGTCCCGCGG
CGGGCAGATTTATTATTTTAACCCCGAGACAGGGGAGAGCGTGTGGGAGA
AGCCCACTGAGCCGACGGGCGGAGGAAGTGCGCAGGTCCATGTCCTCCAT
CTTCTGAAGAAGCACAAGAATTCTCGTCGGCCTTCCTCCTGGCGGCAGGA
GGTCATCACCTGCACGAACGAGGAGGCCATGAAAGCCGTCTTTGAATTGC
GCGAGCAGATCGTCGCGGCGGGGGACAAGGGAGGGTCGGCGGGGATGCAA
AAAGCTTTTGAGGAGCTCGCGAGGGTGGAGAGTGACTGCAGCAGTGCCAA
AGCGGGGGGCAGCCTCGGGTTCTTTGGGCGCGGGTCCATGCAAAAGCCAT
TTGAAGACGCCTCCTTCGCTCTGGAGGTGGGCGAGCTGAGCCAGATGGTC
TCTACTGACAGTGGCGTACACATCATTTTTCGCGTGGCTTAG
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protein sequence of NO12G00280.1

>NO12G00280.1-protein ID=NO12G00280.1-protein|Name=NO12G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MSDLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSAQVHVLH
LLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQ
KAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMV
STDSGVHIIFRVA*
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mRNA from alignment at chr12:92854..94231+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00280.1 ID=NO12G00280.1|Name=NO12G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1378bp|location=Sequence derived from alignment at chr12:92854..94231+ (Nannochloropsis oceanica)
ATGTCTGACCTCCCCGCCGGCTGGGTTCAGCGCGGTACGTCTTTGATCTC GCCCTCCTCTCTTCTTTCTTGCTATCCTTTCCCCAACTCCCCTTCTTCGT TCCCTCAATGCGTAAATCACGCCCGCAGAAAGCAGGTCCCGCGGCGGGCA GATTTATTATTTTAACCCCGAGACAGGGGAGAGCGTGTGGGAGAAGCCCA CTGAGCCGACGGGCGGAGGAAGTGCGCAGGTATCGTGGTGGGATGGGATG GCAGCAGGGGAGGAGGGAGGCAGGGAAGTAAAAGGGGAGACCCCTTTCCC CTTCACCATTTCTTGCATATTTTCTCACGCCACAAATTTAAAGGGAAGCC CGCCATGCAACTGCTGCTGATTTCGGTCTTGGACCTCTGCTGTGTTATCT TCCTATCCATTGTCTTGTCTGACACTTCTCCGGGACCCCCCCCCTCTCTC CCTCCCTCCGGCCTCCCTTCCCCTCTTGCATCAGGTCCATGTCCTCCATC TTCTGAAGAAGCACAAGAATTCTCGTCGGCCTTCCTCCTGGCGGCAGGAG GTCATCACCTGCACGAACGAGGAGGCCATGAAAGCCGTCTTTGGTGAGCG TTTAGATACTGTGACTAGAGCGAACCTCTCTTTCCCTCCCCTCCCCCCTT CCCTCCCTCCCTTCCATGTACCTTCGCGAACCTCATCACCCATTGATCCT GCCTCTTTCCCACCCCCACTTCGCAACAATAGAATTGCGCGAGCAGATCG TCGCGGCGGGGGACAAGGGAGGGTCGGCGGGGATGCAAAAAGCTTTTGAG GAGCTCGCGAGGGTAAGGAATTGGATGGAGGGAGGGAGGGGGGGAAGGAC GACAGGCGGGAGAATCAGGGTAATCGATGACCCAAACAGCCCTCTTTAAT TTACTTGAGAGGAGGCATGTTAATTTTGCCATGCACACATAAGGAGGACG AATGTAATTTTGCCATGCACGCATGCCCACGTGTACAGGTGGAGAGTGAC TGCAGCAGTGCCAAAGCGGGGGGCAGCCTCGGGTTCTTTGGGCGCGGGTC CATGCAAAAGCCATTTGAAGGTAAAGAGGAAGGGGAGGAGGAAGTGGGAT GTTGATAGCTCCTTGTTGCTTCTTTGTTCATTTATTTTTTTATTTTGCTA CGAGGAGACATCATCTCGCCCATTTACAAGCGATGGACTCAATAATACTG ATAATAATAATGAAAATAATTGTCCCGCCTCATCCGCTCTCCCCCTCCCT TTCTCCTCCCTCTCTCCCTTTACTCCCCTTCCCTCCACGTAGACGCCTCC TTCGCTCTGGAGGTGGGCGAGCTGAGCCAGATGGTCTCTACTGACAGTGG CGTACACATCATTTTTCGCGTGGCTTAG
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Coding sequence (CDS) from alignment at chr12:92854..94231+

>NO12G00280.1 ID=NO12G00280.1|Name=NO12G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at chr12:92854..94231+ (Nannochloropsis oceanica)
ATGTCTGACCTCCCCGCCGGCTGGGTTCAGCGCGAAAGCAGGTCCCGCGG
CGGGCAGATTTATTATTTTAACCCCGAGACAGGGGAGAGCGTGTGGGAGA
AGCCCACTGAGCCGACGGGCGGAGGAAGTGCGCAGGTCCATGTCCTCCAT
CTTCTGAAGAAGCACAAGAATTCTCGTCGGCCTTCCTCCTGGCGGCAGGA
GGTCATCACCTGCACGAACGAGGAGGCCATGAAAGCCGTCTTTGAATTGC
GCGAGCAGATCGTCGCGGCGGGGGACAAGGGAGGGTCGGCGGGGATGCAA
AAAGCTTTTGAGGAGCTCGCGAGGGTGGAGAGTGACTGCAGCAGTGCCAA
AGCGGGGGGCAGCCTCGGGTTCTTTGGGCGCGGGTCCATGCAAAAGCCAT
TTGAAGACGCCTCCTTCGCTCTGGAGGTGGGCGAGCTGAGCCAGATGGTC
TCTACTGACAGTGGCGTACACATCATTTTTCGCGTGGCTTAG
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Synonyms
Publications