NO12G00280, NO12G00280 (gene) Nannochloropsis oceanica

Overview
NameNO12G00280
Unique NameNO12G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1378
Alignment locationchr12:92854..94231 +

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Properties
Property NameValue
DescriptionPeptidyl-prolyl cis-trans isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:92854..94231 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0005515protein binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036020WW_dom_sf
IPR000297PPIase_PpiC
IPR001202WW_dom
Homology
[Close]
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_005854844.1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Nannochloropsis gaditana CCMP526] >EKU21511.1 peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 235.3 bits (599), Expect = 1.300e-58
Identity = 123/175 (70.29%), Postives = 136/175 (77.71%), Query Frame = 0 
Query:    1 MSDLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAV------------FELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            MSD+PAGWVQRESRSRGGQIYY+N  TGESVWEKPT P    S QVHVLHLLKKHK SRRPSSWRQE ITCT EEAM+++              LREQIV+A    GSA MQ+AFE+LA+VESDCSSA+AGGSLGFFGRG MQKPFE       VGELS ++STDSGVHII+RVA
Sbjct:    1 MSDIPAGWVQRESRSRGGQIYYYNTTTGESVWEKPTAPASAESGQVHVLHLLKKHKGSRRPSSWRQENITCTKEEAMQSLAAHNTLAPSPSPTALREQIVSA----GSASMQRAFEDLAKVESDCSSARAGGSLGFFGRGQMQKPFEG------VGELSDLISTDSGVHIIYRVA 165
[Close]
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_015912086.1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Parasteatoda tepidariorum])

HSP 1 Score: 172.9 bits (437), Expect = 8.000e-40
Identity = 97/167 (58.08%), Postives = 114/167 (68.26%), Query Frame = 0 
Query:    3 DLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEP------TGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            +LP GW +R SRS  GQ YY N  T ES W++PT+P      TG    QV   HLL KH++SRRPSSWR+E IT T EEA+K + E  EQ+++     G A     FEELA   SDCSSAK GG LG FGRG+MQKPFEDASFAL+VGELS+ V TDSGVH+I R A
Sbjct:    5 ELPKGWEKRMSRST-GQAYYLNVYTKESQWDRPTKPAEPGPGTGNSVDQVRCSHLLVKHRDSRRPSSWREENITRTKEEALKIIEEYYEQLMS-----GKAN----FEELASKYSDCSSAKRGGDLGLFGRGAMQKPFEDASFALKVGELSKPVFTDSGVHLIIRTA 161
[Close]
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_023334123.1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like [Eurytemora affinis])

HSP 1 Score: 172.9 bits (437), Expect = 8.000e-40
Identity = 92/161 (57.14%), Postives = 108/161 (67.08%), Query Frame = 0 
Query:    1 MSDLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFR 162
            MSDLPAGW +R SRS  GQ+Y+ N  T +S W+KPT P     AQV   HLL KH++SRRPSSWR+E IT T EEA+  + E  E+I            +  FEELA   SDCSSAK GG LG FG G MQKPFEDA+FAL+VGE+S+   TDSGVHII R
Sbjct:    1 MSDLPAGWEERTSRST-GQVYFLNQFTKQSQWDKPTTPAQPAPAQVRASHLLVKHQDSRRPSSWREENITRTKEEALAILEEYLERI---------KSKESTFEELASKYSDCSSAKKGGDLGLFGPGQMQKPFEDATFALDVGEMSEPTFTDSGVHIILR 151
[Close]
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_013774555.1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like [Limulus polyphemus] >XP_013774556.2 peptidyl-prolyl cis-trans isomerase NIMA-interacting 1-like [Limulus polyphemus])

HSP 1 Score: 169.5 bits (428), Expect = 8.800e-39
Identity = 94/168 (55.95%), Postives = 113/168 (67.26%), Query Frame = 0 
Query:    3 DLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEP-------TGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            +LP GW +R SRS  GQ YY N  T ES WE+PT+P       +G    QV   HLL KH+ SRRPSSWR+E IT + ++A++ + + REQIV+          +  FEELA   SDCSSAK GG LG FGRG+MQKPFEDASFAL+VGELSQ V TDSG+HII R A
Sbjct:    7 ELPKGWEKRMSRST-GQPYYLNMFTKESQWERPTKPAEPPPPTSGDHLEQVRCSHLLVKHRESRRPSSWREENITRSKDDALELIKDYREQIVSG---------KAMFEELASKFSDCSSAKRGGDLGVFGRGAMQKPFEDASFALKVGELSQPVYTDSGIHIILRTA 164
[Close]
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_018013546.1 (PREDICTED: putative peptidyl-prolyl cis-trans isomerase dodo [Hyalella azteca])

HSP 1 Score: 169.5 bits (428), Expect = 8.800e-39
Identity = 96/166 (57.83%), Postives = 111/166 (66.87%), Query Frame = 0 
Query:    4 LPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEP------TGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            LPAGW +R SRS  GQ YY N  T ES W+ PTEP        GG  +V   HLL KH  SRRPSSW+ E IT + EEA+K V E R+QI        S+G + +F ELA  ESDCSSAK GG LG FGR +MQKPFE+A+FAL+VGELS +V TDSGVHII R A
Sbjct:    8 LPAGWEKRTSRST-GQSYYLNQFTKESQWDVPTEPAKAASNNKGGPEKVQCSHLLVKHAGSRRPSSWKSEEITRSKEEAIKMVQEFRDQI--------SSG-KASFAELASTESDCSSAKRGGDLGLFGRNAMQKPFEEAAFALKVGELSNIVETDSGVHIIMRTA 163
[Close]
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_017773994.1 (PREDICTED: putative peptidyl-prolyl cis-trans isomerase dodo isoform X1 [Nicrophorus vespilloides])

HSP 1 Score: 167.9 bits (424), Expect = 2.600e-38
Identity = 97/163 (59.51%), Postives = 112/163 (68.71%), Query Frame = 0 
Query:    4 LPAGWVQRESRSRG-GQIYYFNPETGESVW---EKPTEPTG-GGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFR 162
            LPAGW +R SRS G GQ YY N  T ES W   +KP EP+G  G  QV   HLL KH+ SRRPSSWR++VIT T +EA   V   REQIV     GG A     F ELA+  SDCSSA+ GG LG FGRG+MQKPFE+A+FAL+ GELS+ VS+DSGVHII R
Sbjct:    6 LPAGWEKRLSRSTGTGQHYYLNVYTKESQWDVPDKPAEPSGSSGPEQVQCSHLLVKHRESRRPSSWREDVITRTKDEAFDLVKSYREQIV-----GGKA----TFSELAQKYSDCSSARRGGDLGPFGRGAMQKPFEEAAFALKPGELSEAVSSDSGVHIILR 159
[Close]
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_002432357.1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative [Pediculus humanus corporis] >EEB19619.1 peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative [Pediculus humanus corporis])

HSP 1 Score: 166.8 bits (421), Expect = 5.700e-38
Identity = 93/165 (56.36%), Postives = 114/165 (69.09%), Query Frame = 0 
Query:    3 DLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEP----TGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            +LPAGW +R SRS  GQ YY N  T ES W++P +P    +G G  QV   HLL KH+NSRRPSSWR+E IT +  EA++ +   REQIV+     G+A    +F ELA+  SDCSSAK GG LG FG+G+MQKPFE  +FAL+VGELS+ V TDSGVHII R A
Sbjct:    6 ELPAGWEKRISRST-GQFYYLNIHTKESQWDRPVKPAEPQSGVGPEQVQCSHLLVKHENSRRPSSWREEKITRSKSEALELLKSYREQIVS-----GAA----SFAELAQQYSDCSSAKRGGDLGPFGKGAMQKPFEQVAFALKVGELSEPVDTDSGVHIILRTA 160
[Close]
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_013411626.1 (peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Lingula anatina])

HSP 1 Score: 166.8 bits (421), Expect = 5.700e-38
Identity = 88/158 (55.70%), Postives = 107/158 (67.72%), Query Frame = 0 
Query:    4 LPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFR 162
            LPAGW  + SRS  G+ YY N  T ES+WEKPT P   G  QV   HLL KH+ SRRPSSWR++ IT T +EA+  +   R++IV+          + +FE+LA   SDCSSAK GG LG FGRG MQKPFE+A F+L+VGELS+ V TDSGVHII R
Sbjct:    5 LPAGWEAKTSRST-GRTYYLNVHTKESIWEKPTRPAEKGMDQVRCSHLLVKHRQSRRPSSWREDNITRTKDEALDILKGYRDKIVSG---------EASFEQLASQFSDCSSAKKGGDLGLFGRGQMQKPFEEAGFSLKVGELSEPVWTDSGVHIILR 152
[Close]
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_005090952.1 (PREDICTED: putative peptidyl-prolyl cis-trans isomerase dodo [Aplysia californica])

HSP 1 Score: 166.4 bits (420), Expect = 7.500e-38
Identity = 91/163 (55.83%), Postives = 109/163 (66.87%), Query Frame = 0 
Query:    1 MSDLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            MSDLP GW +R SRS  G+ YY N  T ES WE PTEP    S +V   HLL KH++SRRP +W+QE IT + EEA++ +   R+ IV           + +F ELA   SDCSSA+ GG LG FG G MQKPFE+ASFAL+VGELS+ VSTDSGVHII R A
Sbjct:    1 MSDLPPGWEKRSSRST-GKDYYMNLYTKESQWEVPTEPAQEKSDKVTCSHLLVKHRDSRRPQNWKQETITRSKEEALQLLDGYRKMIV---------NEEASFAELAEKYSDCSSARKGGDLGSFGPGQMQKPFEEASFALKVGELSEAVSTDSGVHIILRTA 153
[Close]
BLAST of NO12G00280 vs. NCBI_GenBank
Match: XP_021921821.1 (putative peptidyl-prolyl cis-trans isomerase dodo [Zootermopsis nevadensis] >KDR18483.1 Protein dodo [Zootermopsis nevadensis])

HSP 1 Score: 166.4 bits (420), Expect = 7.500e-38
Identity = 94/165 (56.97%), Postives = 114/165 (69.09%), Query Frame = 0 
Query:    3 DLPAGWVQRESRSRGGQIYYFNPETGESVW---EKPTEP-TGGGSAQVHVLHLLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQKAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMVSTDSGVHIIFRVA 164
            +LP+GW +R SRS  GQ YY N  T ES W   EKP EP + GG  QV   HLL KH+NSRRPSSWR++ IT T E+A+  V   REQIV+          + +F ELA+  SDCSSA+ GG LG FGRG+MQ+PFE A+FAL+VGELS+ V+TDSGVHII R A
Sbjct:    5 ELPSGWEKRLSRST-GQHYYLNVYTKESQWDRPEKPAEPVSSGGPDQVQCSHLLVKHQNSRRPSSWREDEITRTKEDALDLVKTYREQIVSG---------RASFAELAQKFSDCSSARRGGDLGPFGRGAMQRPFEQAAFALKVGELSEPVTTDSGVHIILRTA 159
The following BLAST results are available for this feature:
BLAST of NO12G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854844.11.300e-5870.29peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
XP_015912086.18.000e-4058.08peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
XP_023334123.18.000e-4057.14peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
XP_013774555.18.800e-3955.95peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
XP_018013546.18.800e-3957.83PREDICTED: putative peptidyl-prolyl cis-trans isom... [more]
XP_017773994.12.600e-3859.51PREDICTED: putative peptidyl-prolyl cis-trans isom... [more]
XP_002432357.15.700e-3856.36peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
XP_013411626.15.700e-3855.70peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
XP_005090952.17.500e-3855.83PREDICTED: putative peptidyl-prolyl cis-trans isom... [more]
XP_021921821.17.500e-3856.97putative peptidyl-prolyl cis-trans isomerase dodo ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009917NSK009917Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00280.1NO12G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609675gene_10090Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00280.1NO12G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00280 ID=NO12G00280|Name=NO12G00280|organism=Nannochloropsis oceanica|type=gene|length=1378bp
ATGTCTGACCTCCCCGCCGGCTGGGTTCAGCGCGgtacgtctttgatctc
gccctcctctcttctttcttgctatcctttccccaactccccttcttcgt
tccctcaatgcgtaaatcacgcccgcagAAAGCAGGTCCCGCGGCGGGCA
GATTTATTATTTTAACCCCGAGACAGGGGAGAGCGTGTGGGAGAAGCCCA
CTGAGCCGACGGGCGGAGGAAGTGCGCAGgtatcgtggtgggatgggatg
gcagcaggggaggagggaggcagggaagtaaaaggggagacccctttccc
cttcaccatttcttgcatattttctcacgccacaaatttaaagggaagcc
cgccatgcaactgctgctgatttcggtcttggacctctgctgtgttatct
tcctatccattgtcttgtctgacacttctccgggaccccccccctctctc
cctccctccggcctcccttcccctcttgcatcagGTCCATGTCCTCCATC
TTCTGAAGAAGCACAAGAATTCTCGTCGGCCTTCCTCCTGGCGGCAGGAG
GTCATCACCTGCACGAACGAGGAGGCCATGAAAGCCGTCTTTGgtgagcg
tttagatactgtgactagagcgaacctctctttccctcccctcccccctt
ccctccctcccttccatgtaccttcgcgaacctcatcacccattgatcct
gcctctttcccacccccacttcgcaacaatagAATTGCGCGAGCAGATCG
TCGCGGCGGGGGACAAGGGAGGGTCGGCGGGGATGCAAAAAGCTTTTGAG
GAGCTCGCGAGGgtaaggaattggatggagggagggagggggggaaggac
gacaggcgggagaatcagggtaatcgatgacccaaacagccctctttaat
ttacttgagaggaggcatgttaattttgccatgcacacataaggaggacg
aatgtaattttgccatgcacgcatgcccacgtgtacagGTGGAGAGTGAC
TGCAGCAGTGCCAAAGCGGGGGGCAGCCTCGGGTTCTTTGGGCGCGGGTC
CATGCAAAAGCCATTTGAAGgtaaagaggaaggggaggaggaagtgggat
gttgatagctccttgttgcttctttgttcatttatttttttattttgcta
cgaggagacatcatctcgcccatttacaagcgatggactcaataatactg
ataataataatgaaaataattgtcccgcctcatccgctctccccctccct
ttctcctccctctctccctttactccccttccctccacgtagACGCCTCC
TTCGCTCTGGAGGTGGGCGAGCTGAGCCAGATGGTCTCTACTGACAGTGG
CGTACACATCATTTTTCGCGTGGCTTAG
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protein sequence of NO12G00280.1

>NO12G00280.1-protein ID=NO12G00280.1-protein|Name=NO12G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MSDLPAGWVQRESRSRGGQIYYFNPETGESVWEKPTEPTGGGSAQVHVLH
LLKKHKNSRRPSSWRQEVITCTNEEAMKAVFELREQIVAAGDKGGSAGMQ
KAFEELARVESDCSSAKAGGSLGFFGRGSMQKPFEDASFALEVGELSQMV
STDSGVHIIFRVA*
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Synonyms
Publications