NO12G00190, NO12G00190 (gene) Nannochloropsis oceanica

Overview
NameNO12G00190
Unique NameNO12G00190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2085
Alignment locationchr12:55345..57429 +

Link to JBrowse

Properties
Property NameValue
DescriptionSet domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:55345..57429 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Homology
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BLAST of NO12G00190 vs. NCBI_GenBank
Match: EWM26005.1 (set domain protein [Nannochloropsis gaditana])

HSP 1 Score: 183.3 bits (464), Expect = 9.300e-43
Identity = 119/265 (44.91%), Postives = 152/265 (57.36%), Query Frame = 0 
Query:    3 RGSCRRGRERRR-KGTALLGLLLVAAAATSI--AAVSRHGPTATSTDIRSRSSSSC-----FLLPHGCQRPPRRVVEAPTSAHRSGXXXXXXXXXXXXXXXXXXXXXXXXXXFSPRTQSFSSSFAPPTN-SDEMPVLYDKDGVETMGAMEGTKPLQWPNKVLFSQKLKWAPSSAGQDIKESFRRRLLPGIEVRYITEPSHVLKGQYGVYATREFAPFDVIGEYVGRVVPPKVCGEYVATIDWEDCRLSDGAGHLWGVDSAVYGSE 259
            R  C R R RRR +G  L+ +  + A+ +S+  A   RH    TS+  +++   SC      +LP    R   +       AH  G                              + + S SF  PT  + E+   Y ++ ++    ++  KP  WP++VLFSQKLKWA SSAGQD+KE FRRRLLPGIEVR ITEPSHVL GQYGVYATR FAPFDV+GEYVGRVVPP VCG+YVA+ID +D RL  G+   WGVDSA+YG+E
Sbjct:    2 RNLCPRERGRRRTRGIVLVVVSAIVASTSSVLQAQALRH-DHITSSATQNKKFLSCSFVSSLMLPFEPGRALGKSCTFLVKAHPGGGQRTSKEKGRRRGRN------------GDLSTTSSLSFPSPTRAAREVFPPYGEEHIQVEERLK-KKPAHWPSEVLFSQKLKWAASSAGQDVKEVFRRRLLPGIEVRRITEPSHVLHGQYGVYATRAFAPFDVVGEYVGRVVPPAVCGDYVASIDQDDGRLPHGSSP-WGVDSALYGNE 251
The following BLAST results are available for this feature:
BLAST of NO12G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26005.19.300e-4344.91set domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009908NSK009908Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100499g4gene4518Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00190.1NO12G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G00190.2NO12G00190.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO12G00190.3NO12G00190.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00190.1NO12G00190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G00190.2NO12G00190.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO12G00190.3NO12G00190.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00190 ID=NO12G00190|Name=NO12G00190|organism=Nannochloropsis oceanica|type=gene|length=2085bp
CGCTTTTGCTTCAATCGATTGGTCAACTTGCCAAACCCACCCCCTTCACT
CAAGCACCACCCATATATACACAGGCAAGACAACAATAGAAAAAATGACA
AGGGGGTCATGTCGCCGGGGACGTGAGCGGAGAAGAAAGGGCACTGCATT
ACTAGGGCTGCTGCTCGTTGCAGCCGCCGCTACATCAATAGCAGCAGTAT
CACGACATGGTCCCACCGCCACCAGCACGGACATCCGGAGCAGAAGCAGC
AGCAGCTGCTTCCTCTTACCCCACGGCTGTCAGCGACCGCCACGCCGGGT
AGTAGAAGgtgagtttgtgtctttcttgtcactgcctggcccacgtccat
tcgcttttcaccctatcaggtgccttcctttcgtaatgtgtccgtcagca
agaagattttaaccttgcatggaacccctcactatcagagcctatcctga
cgactaagtggtcccattttgtcacccaaaattaatagCTCCCACGTCCG
CTCACCGTAGTGGCGGTGGTGGTAGTGGGAAGGGGAGTAAGGAGAAGCGG
CGAGAGCGAGGCCGTGGTAGCGGCTCCTCCTCTTCCTCACAATTCTCACC
ACGTACGCAGTCCTTCTCCTCCTCTTTTGCCCCTCCAACCAACTCGGACG
AGATGCCGGTGCTTTATGATAAGGATGGTGTGGAGACCATGGGAGCCATG
GAGGGCACCAAGCCATTGCAGTGGCCCAACAAGgtacgtgtgtgtgtgtg
tgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtatgtatgtgtgtgtgtgtatgtgtgtgtgtatgtg
tgtgtctgtatgtctgtctgtctgtctgtctgtccatatgcaatgtcgcc
gtactggacgatttgttcacccctctccgccctccatgcttccttccctt
cctctatagGTCCTGTTTTCCCAGAAGCTCAAGTGGGCACCTTCATCTGC
AGGGCAGGACATCAAGGAAAGCTTCCGTCGCCGTCTCCTCCCAGGTATCG
AAGTCCGCTACATCACCGAGCCCTCCCACGTCTTGAAAGGGCAGTACGgt
acgtgtatagttttcgcgcggatatgaaaggcacagagactacgaggaaa
atagtttatttgtcaatttatgcagactaatgtcctgacattcgataaca
tatagacccaatgtctgccatcctatgttgtcaattttattcacgaagag
attaaacgcgtcggcatggatcctctcaaatcctcagctctccccttcct
cgtccccccccacacacaagGCGTGTACGCTACCCGTGAATTCGCGCCCT
TCGACGTCATAGGGGAGTATGTGGGCCGCGTTGTCCCTCCCAAGGTGTGT
GGGGAGTACGTGGCGACCATTGACTGGGAGGACTGCCGCTTGTCGGACGG
GGCTGGACACCTGTGGGGGGTCGACTCGGCCGTGTACGGAAgtgagtgac
ggagtgagagcagggtgcaggggagcatggacaagatgtgcgggcaaaat
agtttcatttggccatcgatttcggatacacaatgatgcagttacctact
ttcctccttcccccccttttgtgccctccaacccaccctcagATGAGGTG
CGGATGATCAACCATTACCACCGGATTAGCCCCGTGCCCAACGTGAAGTT
CGTCACGTCGTACATAGCCGAGCTCCCACACATCCTTGTGGTGGTCGTGC
GGCCGATTGCAAGAGGCGCCGAGGTCCTGATTGACTACGGgtgagtgagt
aaatgactgtgacggggtgtatgtgtagtacctgtagtaccacatacagt
atgtaggagaccgaagtctaattgatccctctggcccactttcttgtgct
cgcctttccttcccctagACCTAACTACTGGTGTGGGAAGTACCACGCAC
CACCCGCAGATCCGCCGGGGATCGACGACCCGCCCGAGGAGAGAGTGATG
GAGGTGGAAGAGGAGTAAGATGAAGGTAGCTACTGAGTAAGGGGATAAAA
GAAAAAGAAGAAGAAAGAAATGACACGAGTGGAGA
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protein sequence of NO12G00190.1

>NO12G00190.1-protein ID=NO12G00190.1-protein|Name=NO12G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MTRGSCRRGRERRRKGTALLGLLLVAAAATSIAAVSRHGPTATSTDIRSR
SSSSCFLLPHGCQRPPRRVVEAPTSAHRSGGGGSGKGSKEKRRERGRGSG
SSSSSQFSPRTQSFSSSFAPPTNSDEMPVLYDKDGVETMGAMEGTKPLQW
PNKVLFSQKLKWAPSSAGQDIKESFRRRLLPGIEVRYITEPSHVLKGQYG
VYATREFAPFDVIGEYVGRVVPPKVCGEYVATIDWEDCRLSDGAGHLWGV
DSAVYGNEVRMINHYHRISPVPNVKFVTSYIAELPHILVVVVRPIARGAE
VLIDYGPNYWCGKYHAPPADPPGIDDPPEERVMEVEEE*
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protein sequence of NO12G00190.2

>NO12G00190.2-protein ID=NO12G00190.2-protein|Name=NO12G00190.2|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MTRGSCRRGRERRRKGTALLGLLLVAAAATSIAAVSRHGPTATSTDIRSR
SSSSCFLLPHGCQRPPRRVVEAPTSAHRSGGGGSGKGSKEKRRERGRGSG
SSSSSQFSPRTQSFSSSFAPPTNSDEMPVLYDKDGVETMGAMEGTKPLQW
PNKVLFSQKLKWAPSSAGQDIKESFRRRLLPGIEVRYITEPSHVLKGQYG
VYATREFAPFDVIGEYVGRVVPPKVCGEYVATIDWEDCRLSDGAGHLWGV
DSAVYGSE*
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protein sequence of NO12G00190.3

>NO12G00190.3-protein ID=NO12G00190.3-protein|Name=NO12G00190.3|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MTRGSCRRGRERRRKGTALLGLLLVAAAATSIAAVSRHGPTATSTDIRSR
SSSSCFLLPHGCQRPPRRVVEAPTSAHRSGGGGSGKGSKEKRRERGRGSG
SSSSSQFSPRTQSFSSSFAPPTNSDEMPVLYDKDGVETMGAMEGTKPLQW
PNKVLFSQKLKWAPSSAGQDIKESFRRRLLPGIEVRYITEPSHVLKGQYG
VYATREFAPFDVIGEYVGRVVPPKVCGEYVATIDWEDCRLSDGAGHLWGV
DSAVYGSE*
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Synonyms
Publications