NO12G00120, NO12G00120 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G00120
Unique Name	NO12G00120
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4758
Alignment location	chr12:30432..35189 +

Link to JBrowse

Properties


Property Name	Value
Description	Cop9 signalosome complex subunit 2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:30432..35189 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom
IPR036390	WH_DNA-bd_sf
IPR000717	PCI_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm
GO:0005634	nucleus

Homology

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BLAST of NO12G00120 vs. NCBI_GenBank
Match: EWM26019.1 (cop9 signalosome complex subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 698.7 bits (1802), Expect = 1.200e-197
Identity = 364/444 (81.98%), Postives = 391/444 (88.06%), Query Frame = 0

Query:    1 MSDDEGEVYAYSDDGGSDVDYAYGSDEDQDEQDHEIVNSYFEGEEFMQQNQLPEALTKMERVVAVAEERGGDDLKWCFKGLECCVTLLFKLGEYDKMLAAYERLLSYTTAVTRNECTDAINHVLDSLATASGSIVSQTYAKTLAFTEDNERLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLMEVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLHMLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAVYIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILDKRIKGQIDQIDGYLLLRPEGGSSSTKHGALSRWADTLHSVTGGG 445
            MSDDEGEVYAYSDD GSDV           EQDHEIVNSY+EGEEFMQQNQLPEAL KMERVV VA ERGGDDL+WCFKGLEC V LLFKLGE++KMLAAYERLLSYT+AVTRNE TDAIN VLD+++ A+GSIV+QTYAKTLA TE NERLHFTTMIRQAK  LAQ D +   +VIERLH+LC++PDGSDDESKATYLMEVYALEI+ CT T D  RMK I P+TLKLNAAVSDPRIMGII EEGGKLHM Q QWS+AYSEFNEGFRA+QEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFE+ L+HKPNHILDDSFMAVYIEELRRRMREQVLLSI QPY+KMTL   AKELRL+ EEIESLLVDLILDKRIKGQIDQI G++LLRPEG SSS KH AL+RWAD L + TG G
Sbjct:    1 MSDDEGEVYAYSDDEGSDVXXXXXXXXXXXEQDHEIVNSYYEGEEFMQQNQLPEALEKMERVVGVAAERGGDDLRWCFKGLECIVMLLFKLGEHEKMLAAYERLLSYTSAVTRNESTDAINSVLDTISGATGSIVAQTYAKTLASTEGNERLHFTTMIRQAKAYLAQGDLKEVGRVIERLHQLCRNPDGSDDESKATYLMEVYALEISYCTHTCDMARMKEILPRTLKLNAAVSDPRIMGIIREEGGKLHMRQCQWSDAYSEFNEGFRAYQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFERTLEHKPNHILDDSFMAVYIEELRRRMREQVLLSITQPYSKMTLAHVAKELRLSREEIESLLVDLILDKRIKGQIDQIGGFVLLRPEGRSSSGKHAALARWADALQAGTGSG 444

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BLAST of NO12G00120 vs. NCBI_GenBank
Match: XP_012196093.1 (hypothetical protein SPRG_02152 [Saprolegnia parasitica CBS 223.65] >KDO33345.1 hypothetical protein SPRG_02152 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 328.6 bits (841), Expect = 3.200e-86
Identity = 198/454 (43.61%), Postives = 277/454 (61.01%), Query Frame = 0

Query:    1 MSDDEGEVYAY---SDDGGSDVDYAYGSDEDQDEQDHEIVNSYFEGEEFMQQNQLPEALTKMERVVAVAEERGG---DDLKWCFKGLECCVTLLFKLGEYDKMLAAYERLLSYTTAVTRNECTDAINHVLDSLATASGSIVSQTYAKTL--AFTEDNERLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLMEVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLHMLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAVYIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILDKRIKGQIDQIDGYLLLRPEGGSSSTK---HGALSRWADTLHSVTGG 444
            MS DEG  Y Y   SD GGS  D   G +E  DE   +I N+++E ++  + +    AL    +VV++  E      D  K+ F  LE  V L   LG+ D+M+  Y  +L     VTRNECTD+IN +LD +++ S +I+S+ Y  TL       N+RL F T I+  K  L   D     +V+E LH  C+ PDGSDD SKAT L++VY LEI LCT T+D+ +MK ++PKTL L+AA+SDPRIMG+I EEGGK++M +  W +AY+EF E FR +QEAGN+RAKQCLKY  L+N+LA+S INPF + EAKV++D  E+ AM+ LR AYD+ND+ +FEK L++  N I  D  M  Y+  L R +R QV+L +  PY  + L+  A ++ +  E++E L+V+LI D R+  +IDQ  G L  +    S  T      AL++W   L  +  G
Sbjct:    1 MSSDEGSEYEYEYESDYGGSQPD--EGEEEMIDETAVKIENTFYEADD-CKNSDPTRALQLFLQVVSLQSESNSKEKDHTKYRFMSLENIVKLCAHLGKPDEMVGHYAEMLQLLPNVTRNECTDSINSILDIVSSLSATIISKMYTMTLDALRVASNDRLWFQTNIKLGKLYLELGDYAPLHRVLEELHASCKLPDGSDDTSKATSLLDVYCLEIQLCTATNDTKKMKVLYPKTLGLDAAISDPRIMGVIREEGGKMYMSESLWMDAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKVFKDVDEINAMLLLRAAYDSNDIQQFEKILKNPKNQISSDPLMKRYLNPLLRNIRSQVILKLVGPYQSVLLSSIASDMNIPVEDVELLMVELINDGRLHRKIDQQRGVLFSQEHQRSRETNVKTVEALAKWTQALQQLNAG 451

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BLAST of NO12G00120 vs. NCBI_GenBank
Match: XP_008615146.1 (hypothetical protein SDRG_10908 [Saprolegnia diclina VS20] >EQC31305.1 hypothetical protein SDRG_10908 [Saprolegnia diclina VS20])

HSP 1 Score: 327.8 bits (839), Expect = 5.500e-86
Identity = 198/454 (43.61%), Postives = 278/454 (61.23%), Query Frame = 0

Query:    1 MSDDEGEVYAY---SDDGGSDVDYAYGSDEDQDEQDHEIVNSYFEGEEFMQQNQLPEALTKMERVVAVAEE---RGGDDLKWCFKGLECCVTLLFKLGEYDKMLAAYERLLSYTTAVTRNECTDAINHVLDSLATASGSIVSQTYAKTL--AFTEDNERLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLMEVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLHMLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAVYIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILDKRIKGQIDQIDGYLLLRPEGGSSSTK---HGALSRWADTLHSVTGG 444
            MS DEG  Y Y   SD GGS  D   G +E  DE   +I N+++E ++  + +    AL    +VV++  E   +  D+ K+ F  LE  V L   LG+ D+M+  Y  +L     VTRNECTD+IN +LD +++ S +I+S+ Y  TL       N+RL F T I+  K  L   D     +V+E LH  C+ PDGSDD SKAT L++VY LEI LCT T+D+ +MK ++PKTL L+AA+SDPRIMG+I EEGGK++M +  W +AY+EF E FR +QEAGN+RAKQCLKY  L+N+LA+S INPF + EAKV++D  E+ AM+ LR AYD+ND+ +FEK L++  N I  D  M  Y++ L R +R QV+L +  PY  + L   A ++ +  E++E L+V+LI D R+  +IDQ  G L       S  T      AL++W   L  +  G
Sbjct:    1 MSSDEGSEYEYEYESDYGGSQPD--EGEEEMVDETAVKIENTFYEADD-CKNSDPTRALQLFLQVVSLQSESTSKEKDNTKYRFMSLENIVKLCAHLGKPDEMVGHYAEMLQLLPNVTRNECTDSINSILDIVSSLSATIISKMYTMTLDALRVASNDRLWFQTNIKLGKLYLELGDYAPLHRVLEELHASCKLPDGSDDTSKATSLLDVYCLEIQLCTATNDTKKMKVLYPKTLGLDAAISDPRIMGVIREEGGKMYMSESLWMDAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKVFKDVDEINAMLLLRAAYDSNDIQQFEKILKNPKNQISSDPLMKRYLDPLLRNIRSQVILKLVGPYQSVLLASIASDMNIPVEDVELLMVELINDGRLHRKIDQQRGVLFSLEHQRSRETNVKTVEALAKWTSALQQLNTG 451

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BLAST of NO12G00120 vs. NCBI_GenBank
Match: OQR91725.1 (COP9 signalosome complex subunit [Achlya hypogyna])

HSP 1 Score: 325.5 bits (833), Expect = 2.700e-85
Identity = 198/456 (43.42%), Postives = 286/456 (62.72%), Query Frame = 0

Query:    1 MSDDEGEVYAY---SDDGGSDVDYAYGSDEDQDEQDHEIVNSYFEGEEFMQQNQLPEALTKMERVVAV---AEERGGDDLKWCFKGLECCVTLLFKLGEYDKMLAAYERLLSYTTAVTRNECTDAINHVLDSLATASGSIVSQTYAKTLAF--TEDNERLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLMEVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLHMLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAVYIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILDKRIKGQIDQIDGYLL-----LRPEGGSSSTKHGALSRWADTLHSVTGG 444
            MS DEG  Y Y   SD GGS  D   G +E  DE   +I N+++E ++  +      AL    +V+++   A +   D  K+ F  LE  V L   LG+ D+M+A YE +L     VTRNECTD+IN +LD +++ S +I+S+ Y  TL    T +N+RL F T I+  K  L   +     +V+E+L   C+  DGSDD SKAT L++VY LEI LCT T+D+ +MK ++PKTL L+AA+SDPRIMG+I EEGGK++M +  WSEAY+EF E FR +QEAGN+RAKQCLKY  L+N+LA+S INPF + EAKV++D  E+ AM+ LR AYD ND+ +FEK L++  N I  D  M  Y++ L R +R  V+L +  PY  + L+  A+++ ++ +++E L+V+LI D R+  +IDQ +G L         E GS + +  AL++W   L ++  G
Sbjct:    1 MSSDEGSEYEYEYESDYGGSQPD--EGEEEMIDETAVKIENTFYEADD-CKNTDPTRALQLFLQVISLQADAPKDNKDHTKYQFMSLENIVKLCANLGKPDEMIAHYEEMLQLLPNVTRNECTDSINSILDIVSSLSSTIISKMYTITLQALRTANNDRLWFQTNIKLGKLYLELGEYANLHRVLEQLQASCKLADGSDDTSKATSLLDVYCLEIQLCTATNDTAKMKVLYPKTLGLDAAISDPRIMGVIREEGGKMYMSEGLWSEAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKVFKDVDEINAMLLLRAAYDTNDIQQFEKILKNPKNQISSDPLMKRYLDPLLRNIRCHVILKLVGPYQSVLLSSIAQDMNISVQDVELLMVELINDGRLHRKIDQQNGVLYSLEHQKAREIGSKTVE--ALAKWTQALSALNAG 451

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BLAST of NO12G00120 vs. NCBI_GenBank
Match: CBJ30856.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 325.1 bits (832), Expect = 3.600e-85
Identity = 166/349 (47.56%), Postives = 243/349 (69.63%), Query Frame = 0

Query:   97 MLAAYERLLSYTTAVTRNECTDAINHVLDSLATASG-SIVSQTYAKTLAF--TEDNERLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLMEVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLHMLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAVYIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILDKRIKGQIDQIDGYLLL-RPEGGSSSTKHGALSRWADTLHSVT 442
            M   Y+ LL++ ++VTRNE +D++N +LD+++ +    +VSQ Y  TL+    E NER+ F T ++ AK  L   D       I+ LH  C+  +G DD SK   L+EVY + I LCT T++++ MK ++PKT+ LNA+V DPRIMG+I E+GGK++M    W +AY+EF EGFR +QEAGN  AK CLKY  L+N+L  S INPFAA EAKV+Q+++E++AMM+LR+AY+ NDL +FE+ L  K N I +D F+  Y+  LR+R+RE VL+ + +PY K+T+ + A EL L   E+E LL+DLILD+R+ G+IDQI+G+LLL  P   ++S KH A+ RW+++L S++
Sbjct:    1 MQQRYKELLTHVSSVTRNESSDSVNGILDTVSVSEDLRMVSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSRINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLAKFERTLHDKRNRITEDPFVMTYLGPLRQRIRESVLIHLCKPYKKITMGFMAGELSLKTAEVEKLLIDLILDRRLNGKIDQIEGFLLLDGPLETTTSRKHDAMERWSNSLRSLS 349

[Close]

BLAST of NO12G00120 vs. NCBI_GenBank
Match: ETK93870.1 (hypothetical protein L915_03003 [Phytophthora parasitica])

HSP 1 Score: 312.4 bits (799), Expect = 2.400e-81
Identity = 173/415 (41.69%), Postives = 262/415 (63.13%), Query Frame = 0

Query:   38 NSYFEGEEFMQQNQLPEALTKMERVVAVAEERGG-DDLKWCFKGLECCVTLLFKLGEYDKMLAAYERLLSYTTAVTRNECTDAINHVLDSLATASG--------SIVSQTYAKTLAFTED--NERLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLMEVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLHMLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAVYIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILDKRIKGQIDQIDGYLLL--RPEGGSSSTKHGALSRWADTLHS 440
            N+++E E+F Q+  L +AL   +RVVA+ +E    ++ KW F+ LE  V +     ++++ML  YE++L +   VTRNE T++I+ +LD ++ A+G           S+ Y  TL   +D  N+RL F+  ++  K  L  +      +++ +L+  CQ PDG  D SKAT L+EVYALEI LC  T +S +M+ I+PKTL L+AAV+DPRIMG+I EEGGK+++ +++W  AY+EF E FR +QEAGN+RAKQCLKY  L+N+LA+S INPF + EAKVYQD  E+ AM+ LR AY+AND+ +FEK L++    +L D  M  Y+  L R +R QV+  + +PY  + +   +K + +T E++E + V LI +  +  +IDQ  G L+L  R +   +S  + +L RW   L S
Sbjct:   49 NTFYEAEDFRQRGDLTQALEYFQRVVALEKEATPLEERKWSFQALEHVVKICVSRRQWEEMLRNYEQMLEHLAFVTRNESTESISSILDVVSNATGMEKEKDSTKYTSKMYELTLDKLKDVNNDRLWFSMNVKLGKLYLDMQQFDQLQKLLSQLYDYCQTPDGVQDHSKATSLLEVYALEIQLCVATKNSAKMRLIYPKTLDLDAAVADPRIMGVIREEGGKMYLEEKEWMLAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKVYQDVEEIGAMLLLRGAYEANDVVQFEKILKNPKYKLLSDPIMKRYLNPLLRNIRCQVMKKLVRPYQAIRIDSLSKSMNITSEDVEDIAVALIQNLELDAKIDQSRGLLVLQTRQKARDASKMYDSLDRWTQALAS 463

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BLAST of NO12G00120 vs. NCBI_GenBank
Match: ETL47261.1 (hypothetical protein L916_02976 [Phytophthora parasitica])

HSP 1 Score: 312.4 bits (799), Expect = 2.400e-81
Identity = 173/415 (41.69%), Postives = 262/415 (63.13%), Query Frame = 0

Query:   38 NSYFEGEEFMQQNQLPEALTKMERVVAVAEERGG-DDLKWCFKGLECCVTLLFKLGEYDKMLAAYERLLSYTTAVTRNECTDAINHVLDSLATASG--------SIVSQTYAKTLAFTED--NERLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLMEVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLHMLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAVYIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILDKRIKGQIDQIDGYLLL--RPEGGSSSTKHGALSRWADTLHS 440
            N+++E E+F Q+  L +AL   +RVVA+ +E    ++ KW F+ LE  V +     ++++ML  YE++L +   VTRNE T++I+ +LD ++ A+G           S+ Y  TL   +D  N+RL F+  ++  K  L  +      +++ +L+  CQ PDG  D SKAT L+EVYALEI LC  T +S +M+ I+PKTL L+AAV+DPRIMG+I EEGGK+++ +++W  AY+EF E FR +QEAGN+RAKQCLKY  L+N+LA+S INPF + EAKVYQD  E+ AM+ LR AY+AND+ +FEK L++    +L D  M  Y+  L R +R QV+  + +PY  + +   +K + +T E++E + V LI +  +  +IDQ  G L+L  R +   +S  + +L RW   L S
Sbjct:   49 NTFYEAEDFRQRGDLTQALEYFQRVVALEKEATPLEERKWSFQALEHVVKICVSRRQWEEMLRNYEQMLEHLAFVTRNESTESISSILDVVSNATGMEKEKDSTKYTSKMYELTLDKLKDVNNDRLWFSMNVKLGKLYLDMQQFDQLQKLLSQLYDYCQTPDGVQDHSKATSLLEVYALEIQLCVATKNSAKMRLIYPKTLDLDAAVADPRIMGVIREEGGKMYLEEKEWMLAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKVYQDVEEIGAMLLLRGAYEANDVVQFEKILKNPKYKLLSDPIMKRYLNPLLRNIRCQVMKKLVRPYQAIRIDSLSKSMNITSEDVEDIAVALIQNLELDAKIDQSRGLLVLQTRQKARDASKMYDSLDRWTQALAS 463

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BLAST of NO12G00120 vs. NCBI_GenBank
Match: XP_008916201.1 (hypothetical protein PPTG_19531 [Phytophthora parasitica INRA-310] >ETI54016.1 hypothetical protein F443_03121 [Phytophthora parasitica P1569] >ETM98503.1 hypothetical protein PPTG_19531 [Phytophthora parasitica INRA-310] >ETP51815.1 hypothetical protein F442_03100 [Phytophthora parasitica P10297])

HSP 1 Score: 312.0 bits (798), Expect = 3.100e-81
Identity = 173/415 (41.69%), Postives = 263/415 (63.37%), Query Frame = 0

Query:   38 NSYFEGEEFMQQNQLPEALTKMERVVAVAEERGG-DDLKWCFKGLECCVTLLFKLGEYDKMLAAYERLLSYTTAVTRNECTDAINHVLDSLATASG--------SIVSQTYAKTLAFTED--NERLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLMEVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLHMLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAVYIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILDKRIKGQIDQIDGYLLL--RPEGGSSSTKHGALSRWADTLHS 440
            N+++E E+F Q+  L +AL   +RVVA+ +E    ++ KW F+ LE  V +     ++++ML  YE++L +   VTRNE T++I+ +LD +++A+G           S+ Y  TL   +D  N+RL F+  ++  K  L  +      +++ +L+  CQ PDG  D SKAT L+EVYALEI LC  T +S +M+ I+PKTL L+AAV+DPRIMG+I EEGGK+++ +++W  AY+EF E FR +QEAGN+RAKQCLKY  L+N+LA+S INPF + EAKVYQD  E+ AM+ LR AY+AND+ +FEK L++    +L D  M  Y+  L R +R QV+  + +PY  + +   +K + +T E++E + V LI +  +  +IDQ  G L+L  R +   +S  + +L RW   L S
Sbjct:   49 NTFYEAEDFRQRGDLTQALEYFQRVVALEKEATPLEERKWSFQALEHVVKICVSRRQWEEMLRNYEQMLEHLAFVTRNESTESISSILDVVSSATGMEKEKDSAKYTSKMYELTLDKLKDVNNDRLWFSMNVKLGKLYLDMQQFDQLQKLLSQLYDYCQTPDGVQDHSKATSLLEVYALEIQLCVATKNSAKMRLIYPKTLDLDAAVADPRIMGVIREEGGKMYLEEKEWMLAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKVYQDVEEIGAMLLLRGAYEANDVVQFEKILKNPKYKLLSDPIMKRYLNPLLRNIRCQVMKKLVRPYQAIRIDSLSKSMNITSEDVEDIAVALIQNLELDAKIDQSRGLLVLQTRQKARDASKMYDSLDRWTRALAS 463

[Close]

BLAST of NO12G00120 vs. NCBI_GenBank
Match: ETM00377.1 (hypothetical protein L917_02892 [Phytophthora parasitica])

HSP 1 Score: 312.0 bits (798), Expect = 3.100e-81
Identity = 173/415 (41.69%), Postives = 263/415 (63.37%), Query Frame = 0

Query:   38 NSYFEGEEFMQQNQLPEALTKMERVVAVAEERGG-DDLKWCFKGLECCVTLLFKLGEYDKMLAAYERLLSYTTAVTRNECTDAINHVLDSLATASG--------SIVSQTYAKTLAFTED--NERLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLMEVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLHMLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAVYIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILDKRIKGQIDQIDGYLLL--RPEGGSSSTKHGALSRWADTLHS 440
            N+++E E+F Q+  L +AL   +RVVA+ +E    ++ KW F+ LE  V +     ++++ML  YE++L +   VTRNE T++I+ +LD +++A+G           S+ Y  TL   +D  N+RL F+  ++  K  L  +      +++ +L+  CQ PDG  D SKAT L+EVYALEI LC  T +S +M+ I+PKTL L+AAV+DPRIMG+I EEGGK+++ +++W  AY+EF E FR +QEAGN+RAKQCLKY  L+N+LA+S INPF + EAKVYQD  E+ AM+ LR AY+AND+ +FEK L++    +L D  M  Y+  L R +R QV+  + +PY  + +   +K + +T E++E + V LI +  +  +IDQ  G L+L  R +   +S  + +L RW   L S
Sbjct:   49 NTFYEAEDFRQRGDLTQALEYFQRVVALEKEATPLEERKWSFQALEHVVKICVSRRQWEEMLRNYEQMLEHLAFVTRNESTESISSILDVVSSATGMEKEKDSAKYTSKMYELTLDKLKDVNNDRLWFSMNVKLGKLYLDMQQFDQLQKLLSQLYDYCQTPDGVQDHSKATSLLEVYALEIQLCVATKNSAKMRLIYPKTLDLDAAVADPRIMGVIREEGGKMYLEEKEWMLAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKVYQDVEEIGAMLLLRGAYEANDVVQFEKILKNPKYKLLSDPIMKRYLNPLLRNIRCQVMKKLVRPYQAIRIDSLSKSMNITSEDVEDIAVALIQNLELDAKIDQSRGLLVLQTRQKARDASKMYDSLDRWTRALAS 463

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BLAST of NO12G00120 vs. NCBI_GenBank
Match: ETM53569.1 (hypothetical protein L914_02964 [Phytophthora parasitica] >ETO82704.1 hypothetical protein F444_03184 [Phytophthora parasitica P1976])

HSP 1 Score: 312.0 bits (798), Expect = 3.100e-81
Identity = 173/415 (41.69%), Postives = 263/415 (63.37%), Query Frame = 0

Query:   38 NSYFEGEEFMQQNQLPEALTKMERVVAVAEERGG-DDLKWCFKGLECCVTLLFKLGEYDKMLAAYERLLSYTTAVTRNECTDAINHVLDSLATASG--------SIVSQTYAKTLAFTED--NERLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLMEVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLHMLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAVYIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILDKRIKGQIDQIDGYLLL--RPEGGSSSTKHGALSRWADTLHS 440
            N+++E E+F Q+  L +AL   +RVVA+ +E    ++ KW F+ LE  V +     ++++ML  YE++L +   VTRNE T++I+ +LD +++A+G           S+ Y  TL   +D  N+RL F+  ++  K  L  +      +++ +L+  CQ PDG  D SKAT L+EVYALEI LC  T +S +M+ I+PKTL L+AAV+DPRIMG+I EEGGK+++ +++W  AY+EF E FR +QEAGN+RAKQCLKY  L+N+LA+S INPF + EAKVYQD  E+ AM+ LR AY+AND+ +FEK L++    +L D  M  Y+  L R +R QV+  + +PY  + +   +K + +T E++E + V LI +  +  +IDQ  G L+L  R +   +S  + +L RW   L S
Sbjct:   49 NTFYEAEDFRQRGDLTQALEYFQRVVALEKEATPLEERKWSFQALEHVVKICVSRRQWEEMLRNYEQMLEHLAFVTRNESTESISSILDVVSSATGMEKEKDSTKYTSKMYELTLDKLKDVNNDRLWFSMNVKLGKLYLDMQQFDQLQKLLSQLYDYCQTPDGVQDHSKATSLLEVYALEIQLCVATKNSAKMRLIYPKTLDLDAAVADPRIMGVIREEGGKMYLEEKEWMLAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKVYQDVEEIGAMLLLRGAYEANDVVQFEKILKNPKYKLLSDPIMKRYLNPLLRNIRCQVMKKLVRPYQAIRIDSLSKSMNITSEDVEDIAVALIQNLELDAKIDQSRGLLVLQTRQKARDASKMYDSLDRWTRALAS 463

The following BLAST results are available for this feature:

BLAST of NO12G00120 vs. NCBI_GenBank

BLAST of NO12G00120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM26019.1	1.200e-197	81.98	cop9 signalosome complex subunit 2 [Nannochloropsi...	[more]
XP_012196093.1	3.200e-86	43.61	hypothetical protein SPRG_02152 [Saprolegnia paras...	[more]
XP_008615146.1	5.500e-86	43.61	hypothetical protein SDRG_10908 [Saprolegnia dicli...	[more]
OQR91725.1	2.700e-85	43.42	COP9 signalosome complex subunit [Achlya hypogyna]	[more]
CBJ30856.1	3.600e-85	47.56	conserved unknown protein [Ectocarpus siliculosus]	[more]
ETK93870.1	2.400e-81	41.69	hypothetical protein L915_03003 [Phytophthora para...	[more]
ETL47261.1	2.400e-81	41.69	hypothetical protein L916_02976 [Phytophthora para...	[more]
XP_008916201.1	3.100e-81	41.69	hypothetical protein PPTG_19531 [Phytophthora para...	[more]
ETM00377.1	3.100e-81	41.69	hypothetical protein L917_02892 [Phytophthora para...	[more]
ETM53569.1	3.100e-81	41.69	hypothetical protein L914_02964 [Phytophthora para...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL124	nonsL124	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR066	ncniR066	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR006	ngnoR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009901	NSK009901	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO12G00120.1	NO12G00120.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609582	gene_10071	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100150g11	gene4512	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO12G00120.1	NO12G00120.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO12G00120 ID=NO12G00120|Name=NO12G00120|organism=Nannochloropsis oceanica|type=gene|length=4758bp
ACAGACACACATTTCTTACTGTCATCGAGACGTCGACGGACTAGGGGCAG
CTGACGGGCGTGTCTATTCTCATTTAGCCAACCAAGGGGAGCAAGCCTCC
CTCTCTCTTCTCTCTCAACCTCACGATCAATTGCGGGCAGCCCCAGGCAT
GTCGGACGACGAAGGCGAGGTGTACGCTTACAGCGATGACGGGGGCAGTG
ATGTCGACTATGCGTACGGAAGTGATGAGgttagtctgggggtataagat
gataagctggatgtggatggaggaggagatgctgtgtccctcctccgtct
taggatgttggtcagtgcagggttgttgccacttgtacgcgttggtcgtg
ctctgtccttgataaggtctctttttgtcgttccctctgaatattatgcc
atgctctgtattaatagtaggctttgtcagccgcttgtccatagaaatat
taaaacatgtcagcctcacgttcccagggccccgagcgaagccatttctc
ccacccttccctccctcactttccccctccttttcttccgtcttcctctt
tctttcctcaagGACCAAGACGAGCAGGACCACGAGATCGTTAACTCCTA
CTTCGAGGGCGAGGAGTTCATGCAGgtacatgatgagagtggaaggatgg
gaagggggggggaaaggggagagatggagggatattctactacgtcctcg
gatgaatgacaccccagcattcacgcgctcacgccacgcacatgtgcact
tgtctcattcatgtttatgtcatacttatatcaaactgccgagggtggcg
gagaggtggtggtggcagtggtggaggaaggatgagaagacacgatggtt
ccttttcccttgggatggacagagacatatccggcatcccactcaccccc
tcctccttcctttcctccttctcttcctcctatcactacagCAAAACCAG
CTGCCCGAGGCCCTGACGAAGATGGAGCGCGTGGTGGCAGTGGCGGAGGA
GCGGGGGGGGGACGACTTGAAGTGGTGCTTTAAGGGCTTGGAATGCTGTG
TTACGCTGCTGTTCAAGCTAGGGGAATATGAgtgcgtagaaagtgctgga
gagaaggagagcgggagggagggagggagggaaactacctgcttaacctt
acccctcatgtaatcactgcatgacctcggtcgttgggcgtgtctgattc
gcaccgttccctccctcctccctccctctctccttccttccctccctccc
tccctctcacacacaccagCAAGATGCTGGCGGCCTACGAGCGCCTCTTG
TCGTACACCACCGCCGTGACTCGGAATGAGTGCACGGACGCTATCAACCA
CGTCCTGGACTCCCTCGCCACGGCCTCGGGGAGCATTGTCTCGCAGgtag
ggaggaagggaaggagggagggagggagggagggagggagggagggacag
gtggatgggcgtatggattggagcgagggaggccgtggatgaaatagagg
agatatactggcgtccctcccccgggccctcacccgctacctcaacccct
cctctccctccctttctctccctccctcccttccttgtcccagACATACG
CCAAGACACTGGCTTTCACCGAGGACAACGAACGGCTGCACTTCACCACA
ATGATTCGTCAAGCTAAGACGCTCCTCGCACAAGAAGATCCGCAGgtagg
gagggagggagggaggaaggggggaaaggagaaagggatttcatgcaact
cactttctttttaatctaaggcggagatgtgtgaggcacgacagggtttc
cttgtggaggggggaggaagagaggatgggagagaaggagggagggaagg
agggagagagcatgtcttatggcctttggcaggaataacctatcactctt
tcatggcccatctcccattcatcttctaccctccctccctgcctccctcc
ctccctccctccctccctccctagGCGGCAGCCCAGGTGATCGAGCGCCT
CCATCGGCTCTGCCAGCACCCCGACGGCAGCGACGACGAGTCCAAAGCCA
CCTACCTCATGGAAGgtacgtcagcctaccctccctccctccctccctcc
ctccctccctcctccctccatgaatctctcccaccaaccctccttccctc
cctccccccaaccagTCTACGCCCTCGAAATCGCTCTCTGCACCCGAACT
AGCGACTCGGTTCGGATGAAGgtaagcagggagggagggagggagggagg
gagggaggggacgagaggaggtatcttacaacactttccctcatccgcca
ttcctttctctttctctctgactacttccctcccccctccctcttctgct
cagTCGATTTTCCCTAAGACTCTAAAGCTCAACGCCGCCGTCTCCGACCC
TCGAATCATGGgttcgtgtctctcccttcctccctccctccctccctccc
ttcctttttccgtgcggtgcagtcacatctatccctttctttatctctcc
ctcccctcctactaatcagccgcgaggaaggcgggaaactgctcatgctc
atcccacatgccaatggcccgactactccctccctccttccctccctccc
tccctccctagGCATCATCCACGAGGAAGGCGGGAAGCTTCACATGCTGC
AACGGCAGTGGTCCGAGGCCTACTCGGAGTTTAATGAGGGCTTCCGTGCT
CATCAGgtagggagagagggagagatgcaacgagagagggaagaagtgaa
ggaggaagggagggagggagagagggagggaggaataaagctggcctcga
ccttttttttcgggacttcaattcatcttactgtcttcattactcacaac
ttccgccttttcccttccctccccccctccctcccccccctctccctctt
tccctccctcccatcctccacagGAAGCAGGCAACAGCCGGGCCAAGCAG
TGCCTCAAGTACGCCGCCCTCTCCAACATCCTGGCCAACAGCAGCATCAA
TCCCTTCGCCGCCACCGAGGCAAAGGTCTACCAGgtgagaggtctccttc
ctttccttcttccggctcgctctccctccctctctccttccctccttact
cacctgcctatgttttctcagttcgcgtttcttgctcaaagtttactcat
tccccccctccctcttccgtcacccttcctccctccctcctccagGACGA
CCGGGAGGTGATGGCGATGATGGAGCTTCGCATCGCCTACGACGCCAACG
ACCTGCCGCGCTTCGAGAAGgcaagggagggagggagggagggagggagg
gagggcagaaaggaaggagagagaaagattgcacggtgattcagactaag
gcatttacaagcataccatgccctccctttcttcctccctccccccctcc
ctccagGCGTTGCAGCACAAGCCGAACCACATCTTGGACGACTCATTCAT
GGCCGTCTACATCGAGGAACTCCGCCGTCGCATGCGGGAACAGgtaggca
ggctctcccctcctcccctccctccctcctcccttccctccatttttcta
attttcgctcgctcactcctccttccttccctccctccctccctcgctta
tttgtagGTATTGCTGAGTATCGCCCAGCCATACGCCAAGATGACTCTGA
CATGGGCCGCAAAGgtgcgtttgatgaagcgcatttttttggttttattt
tttgcttttatgttatttgttcaatcgttcatcattacgctattattacc
attaccctacctccgcatatatgcacaaaagcagcaacatttaaacgcct
ccgaagggataggagactcggtcttgtgcatcccctccccctccccctct
gccggcgacgttttcaagcccacatttggctttaccaaccacctatttaa
cacttctccccggtccctacctactctcctccctcccagGAGCTACGTCT
CACCCCCGAGGAGATCGAATCCCTCTTGGTGGACCTCATCTTAGACAAGC
GGATCAAGGGCCAGATCGACCAGgtaatggagggagggatggagaaaggg
aggtgattaacatttaatttgattctcgcgttttgatcctttcatagaaa
aaagaaagatggacttggcttacccactcacgtacttacgccccctccct
ccctccccttcttcagATCGACGGCTACCTCCTCCTCCGGCCCGAGGGAG
GGTCCTCGTCAACTAAGCACGGGGCTCTATCACGATGGGCTGACACGCTA
CACTCTGTCACGGGAGGAGGGGCAAGACAGGgtaggttttccacaagggt
tgagagagggtagggaggcagaatgtatctgaaatgtcaaagtgttaaga
atcttactttatgtcctccctggctctccctggctctaactggctctccc
ttcctccctcgtcctcctttctatgccataccttgaacagGATGCTACTC
GTCTTCTGCCGCGCCCGTGGCCTTCGGGAGCACCACAGCCCAAACGTCGT
AATAGTTTAATTTGATGAAAGGATAAGGGGCAGAGAGAGAAGACGAAGAG
AGTTGCTCATGAGAAAGGTGGCGGGTGAAAGTGTATCTACATGTACGTAA
GGCAGGAAAGGAAATAGGAGGCGGAAAAGAATATCGATCACTCCAATTAG
AAGGACGAAAAGTTGTTGTCGTTAGAATGGCAGTAACAACTAGGAAATGG
GACAGGCCGGCTCATATACGTTTGTCTCTGTCTTGTTGCTTTGCGCTAAT
TTCGTTGG

protein sequence of NO12G00120.1

>NO12G00120.1-protein ID=NO12G00120.1-protein|Name=NO12G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MSDDEGEVYAYSDDGGSDVDYAYGSDEDQDEQDHEIVNSYFEGEEFMQQN
QLPEALTKMERVVAVAEERGGDDLKWCFKGLECCVTLLFKLGEYDKMLAA
YERLLSYTTAVTRNECTDAINHVLDSLATASGSIVSQTYAKTLAFTEDNE
RLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLM
EVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLH
MLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFA
ATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAV
YIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILD
KRIKGQIDQIDGYLLLRPEGGSSSTKHGALSRWADTLHSVTGGGARQGCY
SSSAAPVAFGSTTAQTS*

Synonyms

Publications