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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:30432..35189 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00120.1 vs.
Match: EWM26019.1 (cop9 signalosome complex subunit 2 [Nannochloropsis gaditana]) HSP 1 Score: 726.9 bits (1875), Expect = 4.100e-206 Identity = 375/444 (84.46%), Postives = 402/444 (90.54%), Query Frame = 0
Query: 1 MSDDEGEVYAYSDDGGSDVDYAYGSDEDQDEQDHEIVNSYFEGEEFMQQNQLPEALTKMERVVAVAEERGGDDLKWCFKGLECCVTLLFKLGEYDKMLAAYERLLSYTTAVTRNECTDAINHVLDSLATASGSIVSQTYAKTLAFTEDNERLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLMEVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLHMLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAVYIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILDKRIKGQIDQIDGYLLLRPEGGSSSTKHGALSRWADTLHSVTGGG 445
MSDDEGEVYAYSDD GSDVDYAYGSDEDQDEQDHEIVNSY+EGEEFMQQNQLPEAL KMERVV VA ERGGDDL+WCFKGLEC V LLFKLGE++KMLAAYERLLSYT+AVTRNE TDAIN VLD+++ A+GSIV+QTYAKTLA TE NERLHFTTMIRQAK LAQ D + +VIERLH+LC++PDGSDDESKATYLMEVYALEI+ CT T D RMK I P+TLKLNAAVSDPRIMGII EEGGKLHM Q QWS+AYSEFNEGFRA+QEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFE+ L+HKPNHILDDSFMAVYIEELRRRMREQVLLSI QPY+KMTL AKELRL+ EEIESLLVDLILDKRIKGQIDQI G++LLRPEG SSS KH AL+RWAD L + TG G
Sbjct: 1 MSDDEGEVYAYSDDEGSDVDYAYGSDEDQDEQDHEIVNSYYEGEEFMQQNQLPEALEKMERVVGVAAERGGDDLRWCFKGLECIVMLLFKLGEHEKMLAAYERLLSYTSAVTRNESTDAINSVLDTISGATGSIVAQTYAKTLASTEGNERLHFTTMIRQAKAYLAQGDLKEVGRVIERLHQLCRNPDGSDDESKATYLMEVYALEISYCTHTCDMARMKEILPRTLKLNAAVSDPRIMGIIREEGGKLHMRQCQWSDAYSEFNEGFRAYQEAGNSRAKQCLKYAALSNILANSSINPFAATEAKVYQDDREVMAMMELRIAYDANDLPRFERTLEHKPNHILDDSFMAVYIEELRRRMREQVLLSITQPYSKMTLAHVAKELRLSREEIESLLVDLILDKRIKGQIDQIGGFVLLRPEGRSSSGKHAALARWADALQAGTGSG 444
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00120.1 ID=NO12G00120.1|Name=NO12G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp ACAGACACACATTTCTTACTGTCATCGAGACGTCGACGGACTAGGGGCAG CTGACGGGCGTGTCTATTCTCATTTAGCCAACCAAGGGGAGCAAGCCTCC CTCTCTCTTCTCTCTCAACCTCACGATCAATTGCGGGCAGCCCCAGGCAT GTCGGACGACGAAGGCGAGGTGTACGCTTACAGCGATGACGGGGGCAGTG ATGTCGACTATGCGTACGGAAGTGATGAGGACCAAGACGAGCAGGACCAC GAGATCGTTAACTCCTACTTCGAGGGCGAGGAGTTCATGCAGCAAAACCA GCTGCCCGAGGCCCTGACGAAGATGGAGCGCGTGGTGGCAGTGGCGGAGG AGCGGGGGGGGGACGACTTGAAGTGGTGCTTTAAGGGCTTGGAATGCTGT GTTACGCTGCTGTTCAAGCTAGGGGAATATGACAAGATGCTGGCGGCCTA CGAGCGCCTCTTGTCGTACACCACCGCCGTGACTCGGAATGAGTGCACGG ACGCTATCAACCACGTCCTGGACTCCCTCGCCACGGCCTCGGGGAGCATT GTCTCGCAGACATACGCCAAGACACTGGCTTTCACCGAGGACAACGAACG GCTGCACTTCACCACAATGATTCGTCAAGCTAAGACGCTCCTCGCACAAG AAGATCCGCAGGCGGCAGCCCAGGTGATCGAGCGCCTCCATCGGCTCTGC CAGCACCCCGACGGCAGCGACGACGAGTCCAAAGCCACCTACCTCATGGA AGTCTACGCCCTCGAAATCGCTCTCTGCACCCGAACTAGCGACTCGGTTC GGATGAAGTCGATTTTCCCTAAGACTCTAAAGCTCAACGCCGCCGTCTCC GACCCTCGAATCATGGGCATCATCCACGAGGAAGGCGGGAAGCTTCACAT GCTGCAACGGCAGTGGTCCGAGGCCTACTCGGAGTTTAATGAGGGCTTCC GTGCTCATCAGGAAGCAGGCAACAGCCGGGCCAAGCAGTGCCTCAAGTAC GCCGCCCTCTCCAACATCCTGGCCAACAGCAGCATCAATCCCTTCGCCGC CACCGAGGCAAAGGTCTACCAGGACGACCGGGAGGTGATGGCGATGATGG AGCTTCGCATCGCCTACGACGCCAACGACCTGCCGCGCTTCGAGAAGGCG TTGCAGCACAAGCCGAACCACATCTTGGACGACTCATTCATGGCCGTCTA CATCGAGGAACTCCGCCGTCGCATGCGGGAACAGGTATTGCTGAGTATCG CCCAGCCATACGCCAAGATGACTCTGACATGGGCCGCAAAGGAGCTACGT CTCACCCCCGAGGAGATCGAATCCCTCTTGGTGGACCTCATCTTAGACAA GCGGATCAAGGGCCAGATCGACCAGATCGACGGCTACCTCCTCCTCCGGC CCGAGGGAGGGTCCTCGTCAACTAAGCACGGGGCTCTATCACGATGGGCT GACACGCTACACTCTGTCACGGGAGGAGGGGCAAGACAGGGATGCTACTC GTCTTCTGCCGCGCCCGTGGCCTTCGGGAGCACCACAGCCCAAACGTCGT AATAGTTTAATTTGATGAAAGGATAAGGGGCAGAGAGAGAAGACGAAGAG AGTTGCTCATGAGAAAGGTGGCGGGTGAAAGTGTATCTACATGTACGTAA GGCAGGAAAGGAAATAGGAGGCGGAAAAGAATATCGATCACTCCAATTAG AAGGACGAAAAGTTGTTGTCGTTAGAATGGCAGTAACAACTAGGAAATGG GACAGGCCGGCTCATATACGTTTGTCTCTGTCTTGTTGCTTTGCGCTAAT TTCGTTGG back to topprotein sequence of NO12G00120.1 >NO12G00120.1-protein ID=NO12G00120.1-protein|Name=NO12G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp MSDDEGEVYAYSDDGGSDVDYAYGSDEDQDEQDHEIVNSYFEGEEFMQQN QLPEALTKMERVVAVAEERGGDDLKWCFKGLECCVTLLFKLGEYDKMLAA YERLLSYTTAVTRNECTDAINHVLDSLATASGSIVSQTYAKTLAFTEDNE RLHFTTMIRQAKTLLAQEDPQAAAQVIERLHRLCQHPDGSDDESKATYLM EVYALEIALCTRTSDSVRMKSIFPKTLKLNAAVSDPRIMGIIHEEGGKLH MLQRQWSEAYSEFNEGFRAHQEAGNSRAKQCLKYAALSNILANSSINPFA ATEAKVYQDDREVMAMMELRIAYDANDLPRFEKALQHKPNHILDDSFMAV YIEELRRRMREQVLLSIAQPYAKMTLTWAAKELRLTPEEIESLLVDLILD KRIKGQIDQIDGYLLLRPEGGSSSTKHGALSRWADTLHSVTGGGARQGCY SSSAAPVAFGSTTAQTS* back to topmRNA from alignment at chr12:30432..35189+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00120.1 ID=NO12G00120.1|Name=NO12G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=4758bp|location=Sequence derived from alignment at chr12:30432..35189+ (Nannochloropsis oceanica) ACAGACACACATTTCTTACTGTCATCGAGACGTCGACGGACTAGGGGCAG
CTGACGGGCGTGTCTATTCTCATTTAGCCAACCAAGGGGAGCAAGCCTCC
CTCTCTCTTCTCTCTCAACCTCACGATCAATTGCGGGCAGCCCCAGGCAT
GTCGGACGACGAAGGCGAGGTGTACGCTTACAGCGATGACGGGGGCAGTG
ATGTCGACTATGCGTACGGAAGTGATGAGGTTAGTCTGGGGGTATAAGAT
GATAAGCTGGATGTGGATGGAGGAGGAGATGCTGTGTCCCTCCTCCGTCT
TAGGATGTTGGTCAGTGCAGGGTTGTTGCCACTTGTACGCGTTGGTCGTG
CTCTGTCCTTGATAAGGTCTCTTTTTGTCGTTCCCTCTGAATATTATGCC
ATGCTCTGTATTAATAGTAGGCTTTGTCAGCCGCTTGTCCATAGAAATAT
TAAAACATGTCAGCCTCACGTTCCCAGGGCCCCGAGCGAAGCCATTTCTC
CCACCCTTCCCTCCCTCACTTTCCCCCTCCTTTTCTTCCGTCTTCCTCTT
TCTTTCCTCAAGGACCAAGACGAGCAGGACCACGAGATCGTTAACTCCTA
CTTCGAGGGCGAGGAGTTCATGCAGGTACATGATGAGAGTGGAAGGATGG
GAAGGGGGGGGGAAAGGGGAGAGATGGAGGGATATTCTACTACGTCCTCG
GATGAATGACACCCCAGCATTCACGCGCTCACGCCACGCACATGTGCACT
TGTCTCATTCATGTTTATGTCATACTTATATCAAACTGCCGAGGGTGGCG
GAGAGGTGGTGGTGGCAGTGGTGGAGGAAGGATGAGAAGACACGATGGTT
CCTTTTCCCTTGGGATGGACAGAGACATATCCGGCATCCCACTCACCCCC
TCCTCCTTCCTTTCCTCCTTCTCTTCCTCCTATCACTACAGCAAAACCAG
CTGCCCGAGGCCCTGACGAAGATGGAGCGCGTGGTGGCAGTGGCGGAGGA
GCGGGGGGGGGACGACTTGAAGTGGTGCTTTAAGGGCTTGGAATGCTGTG
TTACGCTGCTGTTCAAGCTAGGGGAATATGAGTGCGTAGAAAGTGCTGGA
GAGAAGGAGAGCGGGAGGGAGGGAGGGAGGGAAACTACCTGCTTAACCTT
ACCCCTCATGTAATCACTGCATGACCTCGGTCGTTGGGCGTGTCTGATTC
GCACCGTTCCCTCCCTCCTCCCTCCCTCTCTCCTTCCTTCCCTCCCTCCC
TCCCTCTCACACACACCAGCAAGATGCTGGCGGCCTACGAGCGCCTCTTG
TCGTACACCACCGCCGTGACTCGGAATGAGTGCACGGACGCTATCAACCA
CGTCCTGGACTCCCTCGCCACGGCCTCGGGGAGCATTGTCTCGCAGGTAG
GGAGGAAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACAG
GTGGATGGGCGTATGGATTGGAGCGAGGGAGGCCGTGGATGAAATAGAGG
AGATATACTGGCGTCCCTCCCCCGGGCCCTCACCCGCTACCTCAACCCCT
CCTCTCCCTCCCTTTCTCTCCCTCCCTCCCTTCCTTGTCCCAGACATACG
CCAAGACACTGGCTTTCACCGAGGACAACGAACGGCTGCACTTCACCACA
ATGATTCGTCAAGCTAAGACGCTCCTCGCACAAGAAGATCCGCAGGTAGG
GAGGGAGGGAGGGAGGAAGGGGGGAAAGGAGAAAGGGATTTCATGCAACT
CACTTTCTTTTTAATCTAAGGCGGAGATGTGTGAGGCACGACAGGGTTTC
CTTGTGGAGGGGGGAGGAAGAGAGGATGGGAGAGAAGGAGGGAGGGAAGG
AGGGAGAGAGCATGTCTTATGGCCTTTGGCAGGAATAACCTATCACTCTT
TCATGGCCCATCTCCCATTCATCTTCTACCCTCCCTCCCTGCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTAGGCGGCAGCCCAGGTGATCGAGCGCCT
CCATCGGCTCTGCCAGCACCCCGACGGCAGCGACGACGAGTCCAAAGCCA
CCTACCTCATGGAAGGTACGTCAGCCTACCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCTCCCTCCATGAATCTCTCCCACCAACCCTCCTTCCCTC
CCTCCCCCCAACCAGTCTACGCCCTCGAAATCGCTCTCTGCACCCGAACT
AGCGACTCGGTTCGGATGAAGGTAAGCAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGGACGAGAGGAGGTATCTTACAACACTTTCCCTCATCCGCCA
TTCCTTTCTCTTTCTCTCTGACTACTTCCCTCCCCCCTCCCTCTTCTGCT
CAGTCGATTTTCCCTAAGACTCTAAAGCTCAACGCCGCCGTCTCCGACCC
TCGAATCATGGGTTCGTGTCTCTCCCTTCCTCCCTCCCTCCCTCCCTCCC
TTCCTTTTTCCGTGCGGTGCAGTCACATCTATCCCTTTCTTTATCTCTCC
CTCCCCTCCTACTAATCAGCCGCGAGGAAGGCGGGAAACTGCTCATGCTC
ATCCCACATGCCAATGGCCCGACTACTCCCTCCCTCCTTCCCTCCCTCCC
TCCCTCCCTAGGCATCATCCACGAGGAAGGCGGGAAGCTTCACATGCTGC
AACGGCAGTGGTCCGAGGCCTACTCGGAGTTTAATGAGGGCTTCCGTGCT
CATCAGGTAGGGAGAGAGGGAGAGATGCAACGAGAGAGGGAAGAAGTGAA
GGAGGAAGGGAGGGAGGGAGAGAGGGAGGGAGGAATAAAGCTGGCCTCGA
CCTTTTTTTTCGGGACTTCAATTCATCTTACTGTCTTCATTACTCACAAC
TTCCGCCTTTTCCCTTCCCTCCCCCCCTCCCTCCCCCCCCTCTCCCTCTT
TCCCTCCCTCCCATCCTCCACAGGAAGCAGGCAACAGCCGGGCCAAGCAG
TGCCTCAAGTACGCCGCCCTCTCCAACATCCTGGCCAACAGCAGCATCAA
TCCCTTCGCCGCCACCGAGGCAAAGGTCTACCAGGTGAGAGGTCTCCTTC
CTTTCCTTCTTCCGGCTCGCTCTCCCTCCCTCTCTCCTTCCCTCCTTACT
CACCTGCCTATGTTTTCTCAGTTCGCGTTTCTTGCTCAAAGTTTACTCAT
TCCCCCCCTCCCTCTTCCGTCACCCTTCCTCCCTCCCTCCTCCAGGACGA
CCGGGAGGTGATGGCGATGATGGAGCTTCGCATCGCCTACGACGCCAACG
ACCTGCCGCGCTTCGAGAAGGCAAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGCAGAAAGGAAGGAGAGAGAAAGATTGCACGGTGATTCAGACTAAG
GCATTTACAAGCATACCATGCCCTCCCTTTCTTCCTCCCTCCCCCCCTCC
CTCCAGGCGTTGCAGCACAAGCCGAACCACATCTTGGACGACTCATTCAT
GGCCGTCTACATCGAGGAACTCCGCCGTCGCATGCGGGAACAGGTAGGCA
GGCTCTCCCCTCCTCCCCTCCCTCCCTCCTCCCTTCCCTCCATTTTTCTA
ATTTTCGCTCGCTCACTCCTCCTTCCTTCCCTCCCTCCCTCCCTCGCTTA
TTTGTAGGTATTGCTGAGTATCGCCCAGCCATACGCCAAGATGACTCTGA
CATGGGCCGCAAAGGTGCGTTTGATGAAGCGCATTTTTTTGGTTTTATTT
TTTGCTTTTATGTTATTTGTTCAATCGTTCATCATTACGCTATTATTACC
ATTACCCTACCTCCGCATATATGCACAAAAGCAGCAACATTTAAACGCCT
CCGAAGGGATAGGAGACTCGGTCTTGTGCATCCCCTCCCCCTCCCCCTCT
GCCGGCGACGTTTTCAAGCCCACATTTGGCTTTACCAACCACCTATTTAA
CACTTCTCCCCGGTCCCTACCTACTCTCCTCCCTCCCAGGAGCTACGTCT
CACCCCCGAGGAGATCGAATCCCTCTTGGTGGACCTCATCTTAGACAAGC
GGATCAAGGGCCAGATCGACCAGGTAATGGAGGGAGGGATGGAGAAAGGG
AGGTGATTAACATTTAATTTGATTCTCGCGTTTTGATCCTTTCATAGAAA
AAAGAAAGATGGACTTGGCTTACCCACTCACGTACTTACGCCCCCTCCCT
CCCTCCCCTTCTTCAGATCGACGGCTACCTCCTCCTCCGGCCCGAGGGAG
GGTCCTCGTCAACTAAGCACGGGGCTCTATCACGATGGGCTGACACGCTA
CACTCTGTCACGGGAGGAGGGGCAAGACAGGGTAGGTTTTCCACAAGGGT
TGAGAGAGGGTAGGGAGGCAGAATGTATCTGAAATGTCAAAGTGTTAAGA
ATCTTACTTTATGTCCTCCCTGGCTCTCCCTGGCTCTAACTGGCTCTCCC
TTCCTCCCTCGTCCTCCTTTCTATGCCATACCTTGAACAGGATGCTACTC
GTCTTCTGCCGCGCCCGTGGCCTTCGGGAGCACCACAGCCCAAACGTCGT
AATAGTTTAATTTGATGAAAGGATAAGGGGCAGAGAGAGAAGACGAAGAG
AGTTGCTCATGAGAAAGGTGGCGGGTGAAAGTGTATCTACATGTACGTAA
GGCAGGAAAGGAAATAGGAGGCGGAAAAGAATATCGATCACTCCAATTAG
AAGGACGAAAAGTTGTTGTCGTTAGAATGGCAGTAACAACTAGGAAATGG
GACAGGCCGGCTCATATACGTTTGTCTCTGTCTTGTTGCTTTGCGCTAAT
TTCGTTGG back to topCoding sequence (CDS) from alignment at chr12:30432..35189+ >NO12G00120.1 ID=NO12G00120.1|Name=NO12G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr12:30432..35189+ (Nannochloropsis oceanica) ATGTCGGACGACGAAGGCGAGGTGTACGCTTACAGCGATGACGGGGGCAG TGATGTCGACTATGCGTACGGAAGTGATGAGGACCAAGACGAGCAGGACC ACGAGATCGTTAACTCCTACTTCGAGGGCGAGGAGTTCATGCAGCAAAAC CAGCTGCCCGAGGCCCTGACGAAGATGGAGCGCGTGGTGGCAGTGGCGGA GGAGCGGGGGGGGGACGACTTGAAGTGGTGCTTTAAGGGCTTGGAATGCT GTGTTACGCTGCTGTTCAAGCTAGGGGAATATGACAAGATGCTGGCGGCC TACGAGCGCCTCTTGTCGTACACCACCGCCGTGACTCGGAATGAGTGCAC GGACGCTATCAACCACGTCCTGGACTCCCTCGCCACGGCCTCGGGGAGCA TTGTCTCGCAGACATACGCCAAGACACTGGCTTTCACCGAGGACAACGAA CGGCTGCACTTCACCACAATGATTCGTCAAGCTAAGACGCTCCTCGCACA AGAAGATCCGCAGGCGGCAGCCCAGGTGATCGAGCGCCTCCATCGGCTCT GCCAGCACCCCGACGGCAGCGACGACGAGTCCAAAGCCACCTACCTCATG GAAGTCTACGCCCTCGAAATCGCTCTCTGCACCCGAACTAGCGACTCGGT TCGGATGAAGTCGATTTTCCCTAAGACTCTAAAGCTCAACGCCGCCGTCT CCGACCCTCGAATCATGGGCATCATCCACGAGGAAGGCGGGAAGCTTCAC ATGCTGCAACGGCAGTGGTCCGAGGCCTACTCGGAGTTTAATGAGGGCTT CCGTGCTCATCAGGAAGCAGGCAACAGCCGGGCCAAGCAGTGCCTCAAGT ACGCCGCCCTCTCCAACATCCTGGCCAACAGCAGCATCAATCCCTTCGCC GCCACCGAGGCAAAGGTCTACCAGGACGACCGGGAGGTGATGGCGATGAT GGAGCTTCGCATCGCCTACGACGCCAACGACCTGCCGCGCTTCGAGAAGG CGTTGCAGCACAAGCCGAACCACATCTTGGACGACTCATTCATGGCCGTC TACATCGAGGAACTCCGCCGTCGCATGCGGGAACAGGTATTGCTGAGTAT CGCCCAGCCATACGCCAAGATGACTCTGACATGGGCCGCAAAGGAGCTAC GTCTCACCCCCGAGGAGATCGAATCCCTCTTGGTGGACCTCATCTTAGAC AAGCGGATCAAGGGCCAGATCGACCAGATCGACGGCTACCTCCTCCTCCG GCCCGAGGGAGGGTCCTCGTCAACTAAGCACGGGGCTCTATCACGATGGG CTGACACGCTACACTCTGTCACGGGAGGAGGGGCAAGACAGGGATGCTAC TCGTCTTCTGCCGCGCCCGTGGCCTTCGGGAGCACCACAGCCCAAACGTC GTAA back to top
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