NO12G00070, NO12G00070 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO12G00070 vs. NCBI_GenBank
Match: EWM26017.1 (ferredoxin [Nannochloropsis gaditana]) HSP 1 Score: 203.8 bits (517), Expect = 4.700e-49 Identity = 92/113 (81.42%), Postives = 107/113 (94.69%), Query Frame = 0 Query: 70 PSKGILTIVGPDGKELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRPPKKGK 183 PSKGI+T++GPDG +L V+EA+PG+NLRKTLQA+K+DVYDL+ KMTNCNGAGQCGTCVVKVTSPSWG+RSEYEA KILKGRKFG+ EEYRLACQT+VE GEAT++VRPPKKGK Sbjct: 69 PSKGIVTVLGPDGAQLRVIEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGLRSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRPPKKGK 181
BLAST of NO12G00070 vs. NCBI_GenBank
Match: CBN80192.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 105.9 bits (263), Expect = 1.300e-19 Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 0 Query: 88 LEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVT-SPSWGIRSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRPPKK 181 L+A+ G NLRKTL A KV+VYD++ KMTNCNG GQCGTCVV+V + W RSE+EA K LKGR E RL+CQT ++ G+ATI+ +PPKK Sbjct: 173 LKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGK-LKGR----PESQRLSCQTVIQ-GDATIVTKPPKK 260
BLAST of NO12G00070 vs. NCBI_GenBank
Match: XP_005854309.1 (hypothetical protein NGA_0190300 [Nannochloropsis gaditana CCMP526] >EKU22048.1 hypothetical protein NGA_0190300 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 89.0 bits (219), Expect = 1.700e-14 Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 0 Query: 70 PSKGILTIVGPDGKELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAG 122 PSKGI+T++GPDG +L V+EA+PG+NLRKTLQA+K+DVYDL+ KMTNCNG G Sbjct: 69 PSKGIVTVLGPDGAQLRVIEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGLG 120
BLAST of NO12G00070 vs. NCBI_GenBank
Match: XP_005535584.1 (unknown [2Fe-2S] ferredoxin [Cyanidioschyzon merolae strain 10D] >BAM79298.1 unknown [2Fe-2S] ferredoxin [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 77.4 bits (189), Expect = 5.100e-11 Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 0 Query: 75 LTIVGPDGKELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSE-YEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRP 178 +T+ E VLEA G+NLRK L K+DVY L K+TNC G GQCGTC+V +T + + A+I + ++ D +RL+C T +E G T+ +P Sbjct: 90 VTVYEKGKSEPRVLEAPVGSNLRKVLLENKIDVYTLRGKLTNCGGGGQCGTCIVDITEGQYNTNPRGWREARIFENKQAPD--SWRLSCCTKIE-GPITVRTKP 190
BLAST of NO12G00070 vs. NCBI_GenBank
Match: WP_073635575.1 (iron ABC transporter substrate-binding protein [Scytonema sp. HK-05] >OKH51454.1 iron ABC transporter substrate-binding protein [Scytonema sp. HK-05] >BAY48299.1 iron-sulfur cluster-binding protein [Scytonema sp. HK-05]) HSP 1 Score: 73.6 bits (179), Expect = 7.300e-10 Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 0 Query: 93 GANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRP 178 GANLR ++ +Y +++K+TNC G+GQCGTC+V++ + + E K++ RK E YRLACQTSV G ++ RP Sbjct: 18 GANLRLNALENRIPIYKMLAKLTNCGGSGQCGTCIVEIVEGLENLSTRTEVEKVMLKRK---PENYRLACQTSV-YGPVSVKTRP 98
BLAST of NO12G00070 vs. NCBI_GenBank
Match: WP_015216294.1 (ferredoxin [Anabaena cylindrica] >AFZ59678.1 ferredoxin [Anabaena cylindrica PCC 7122] >BAY03276.1 ferredoxin [Anabaena cylindrica PCC 7122]) HSP 1 Score: 73.2 bits (178), Expect = 9.600e-10 Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 0 Query: 83 KELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTS--PSWGIRSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRP 178 KE + GANLR +D+Y LI KMTNC GAGQCGTC+V+V + R+++E K K + YRLACQT V G +++ +P Sbjct: 8 KENKEIVTADGANLRLKAMENNIDIYTLIGKMTNCGGAGQCGTCIVQVVEGLENLSPRTDFENRKFKK-----KPDNYRLACQTLVN-GPVSVVTKP 98
BLAST of NO12G00070 vs. NCBI_GenBank
Match: WP_039727861.1 (iron ABC transporter substrate-binding protein [Lyngbya confervoides] >KIF15661.1 iron ABC transporter substrate-binding protein [Aphanocapsa montana BDHKU210001] >KIF40583.1 iron ABC transporter substrate-binding protein [Lyngbya confervoides BDU141951]) HSP 1 Score: 73.2 bits (178), Expect = 9.600e-10 Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 0 Query: 90 AQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGI--RSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRPPKK 181 A GANLR +D+Y L+ KM NC G GQCGTCVV++T S + R++ E K+ K E RLACQT V G+ T+ +P KK Sbjct: 15 AADGANLRYKAMENDIDIYTLVGKMMNCGGYGQCGTCVVEITEGSENLSPRTQVEERKLRK-----RPENCRLACQTLVN-GDITVKTKPKKK 101
BLAST of NO12G00070 vs. NCBI_GenBank
Match: WP_073639519.1 (iron ABC transporter substrate-binding protein [Nostoc calcicola] >OKH41797.1 iron ABC transporter substrate-binding protein [Nostoc calcicola FACHB-389]) HSP 1 Score: 73.2 bits (178), Expect = 9.600e-10 Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 0 Query: 83 KELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGI--RSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRP 178 KE + A GANLR +D+Y LI KMTNC G GQCGTC+V++ + R++ E K+ K E YRLACQT V G +++ +P Sbjct: 8 KENKEVVAADGANLRLKAMQNNIDIYTLIGKMTNCGGYGQCGTCIVEIVEGQQNLSPRTDVENRKLKK-----KPENYRLACQTLVN-GPVSVVTKP 98
BLAST of NO12G00070 vs. NCBI_GenBank
Match: WP_099071961.1 (iron ABC transporter substrate-binding protein [Nostoc linckia] >PHJ55839.1 iron ABC transporter substrate-binding protein [Nostoc linckia z1] >PHJ57352.1 iron ABC transporter substrate-binding protein [Nostoc linckia z3] >PHJ58605.1 iron ABC transporter substrate-binding protein [Nostoc linckia z2] >PHJ74105.1 iron ABC transporter substrate-binding protein [Nostoc linckia z4] >PHJ82604.1 iron ABC transporter substrate-binding protein [Nostoc linckia z6] >PHJ89156.1 iron ABC transporter substrate-binding protein [Nostoc linckia z7] >PHJ95475.1 iron ABC transporter substrate-binding protein [Nostoc linckia z8] >PHJ99719.1 iron ABC transporter substrate-binding protein [Nostoc linckia z9] >PHK13376.1 iron ABC transporter substrate-binding protein [Nostoc linckia z14] >PHK14327.1 iron ABC transporter substrate-binding protein [Nostoc linckia z13] >PHK29316.1 iron ABC transporter substrate-binding protein [Nostoc linckia z18] >PHK36094.1 iron ABC transporter substrate-binding protein [Nostoc linckia z15] >PHK41870.1 iron ABC transporter substrate-binding protein [Nostoc linckia z16]) HSP 1 Score: 72.0 bits (175), Expect = 2.100e-9 Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 0 Query: 83 KELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGI--RSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRP 178 KE + A GANLR +D+Y LI KMTNC G GQCGTC+V++ + R++ E K+ K E YRLACQT V G +++ +P Sbjct: 8 KENKEVVAADGANLRLKAIQNNIDIYTLIGKMTNCGGYGQCGTCIVEIVEGQQNLSPRTDVENRKLKK-----KPENYRLACQTLVN-GPVSVVTKP 98
BLAST of NO12G00070 vs. NCBI_GenBank
Match: BBD64301.1 (ferredoxin [Nostoc commune HK-02] >GBG18372.1 ferredoxin [Nostoc commune NIES-4072]) HSP 1 Score: 72.0 bits (175), Expect = 2.100e-9 Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 0 Query: 83 KELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSEYEAAKILKGRKFGDE-EEYRLACQTSVEAGEATIMVRP 178 KE + A GANLR +D+Y I KMTNC G+GQCGTC+V++ + E ++ RKF + E YRLACQT V G +++ +P Sbjct: 8 KENKEVVAADGANLRLKAMQNDIDIYKFIGKMTNCGGSGQCGTCIVEIVEGLENLSPRTE----VENRKFKKKPENYRLACQTLVN-GSVSVVTKP 98 The following BLAST results are available for this feature:
BLAST of NO12G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO12G00070 ID=NO12G00070|Name=NO12G00070|organism=Nannochloropsis oceanica|type=gene|length=1704bpback to top protein sequence of NO12G00070.1 >NO12G00070.1-protein ID=NO12G00070.1-protein|Name=NO12G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bpback to top Synonyms
Publications
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