NO12G00070, NO12G00070 (gene) Nannochloropsis oceanica

Overview
NameNO12G00070
Unique NameNO12G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1704
Alignment locationchr12:12931..14634 -

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Properties
Property NameValue
DescriptionFerredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:12931..14634 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
Homology
BLAST of NO12G00070 vs. NCBI_GenBank
Match: EWM26017.1 (ferredoxin [Nannochloropsis gaditana])

HSP 1 Score: 203.8 bits (517), Expect = 4.700e-49
Identity = 92/113 (81.42%), Postives = 107/113 (94.69%), Query Frame = 0
Query:   70 PSKGILTIVGPDGKELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRPPKKGK 183
            PSKGI+T++GPDG +L V+EA+PG+NLRKTLQA+K+DVYDL+ KMTNCNGAGQCGTCVVKVTSPSWG+RSEYEA KILKGRKFG+ EEYRLACQT+VE GEAT++VRPPKKGK
Sbjct:   69 PSKGIVTVLGPDGAQLRVIEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGLRSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRPPKKGK 181          
BLAST of NO12G00070 vs. NCBI_GenBank
Match: CBN80192.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 105.9 bits (263), Expect = 1.300e-19
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 0
Query:   88 LEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVT-SPSWGIRSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRPPKK 181
            L+A+ G NLRKTL A KV+VYD++ KMTNCNG GQCGTCVV+V  +  W  RSE+EA K LKGR     E  RL+CQT ++ G+ATI+ +PPKK
Sbjct:  173 LKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGK-LKGR----PESQRLSCQTVIQ-GDATIVTKPPKK 260          
BLAST of NO12G00070 vs. NCBI_GenBank
Match: XP_005854309.1 (hypothetical protein NGA_0190300 [Nannochloropsis gaditana CCMP526] >EKU22048.1 hypothetical protein NGA_0190300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 89.0 bits (219), Expect = 1.700e-14
Identity = 38/52 (73.08%), Postives = 48/52 (92.31%), Query Frame = 0
Query:   70 PSKGILTIVGPDGKELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAG 122
            PSKGI+T++GPDG +L V+EA+PG+NLRKTLQA+K+DVYDL+ KMTNCNG G
Sbjct:   69 PSKGIVTVLGPDGAQLRVIEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGLG 120          
BLAST of NO12G00070 vs. NCBI_GenBank
Match: XP_005535584.1 (unknown [2Fe-2S] ferredoxin [Cyanidioschyzon merolae strain 10D] >BAM79298.1 unknown [2Fe-2S] ferredoxin [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 77.4 bits (189), Expect = 5.100e-11
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 0
Query:   75 LTIVGPDGKELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSE-YEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRP 178
            +T+      E  VLEA  G+NLRK L   K+DVY L  K+TNC G GQCGTC+V +T   +      +  A+I + ++  D   +RL+C T +E G  T+  +P
Sbjct:   90 VTVYEKGKSEPRVLEAPVGSNLRKVLLENKIDVYTLRGKLTNCGGGGQCGTCIVDITEGQYNTNPRGWREARIFENKQAPD--SWRLSCCTKIE-GPITVRTKP 190          
BLAST of NO12G00070 vs. NCBI_GenBank
Match: WP_073635575.1 (iron ABC transporter substrate-binding protein [Scytonema sp. HK-05] >OKH51454.1 iron ABC transporter substrate-binding protein [Scytonema sp. HK-05] >BAY48299.1 iron-sulfur cluster-binding protein [Scytonema sp. HK-05])

HSP 1 Score: 73.6 bits (179), Expect = 7.300e-10
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 0
Query:   93 GANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRP 178
            GANLR      ++ +Y +++K+TNC G+GQCGTC+V++      + +  E  K++  RK    E YRLACQTSV  G  ++  RP
Sbjct:   18 GANLRLNALENRIPIYKMLAKLTNCGGSGQCGTCIVEIVEGLENLSTRTEVEKVMLKRK---PENYRLACQTSV-YGPVSVKTRP 98          
BLAST of NO12G00070 vs. NCBI_GenBank
Match: WP_015216294.1 (ferredoxin [Anabaena cylindrica] >AFZ59678.1 ferredoxin [Anabaena cylindrica PCC 7122] >BAY03276.1 ferredoxin [Anabaena cylindrica PCC 7122])

HSP 1 Score: 73.2 bits (178), Expect = 9.600e-10
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 0
Query:   83 KELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTS--PSWGIRSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRP 178
            KE   +    GANLR       +D+Y LI KMTNC GAGQCGTC+V+V     +   R+++E  K  K       + YRLACQT V  G  +++ +P
Sbjct:    8 KENKEIVTADGANLRLKAMENNIDIYTLIGKMTNCGGAGQCGTCIVQVVEGLENLSPRTDFENRKFKK-----KPDNYRLACQTLVN-GPVSVVTKP 98          
BLAST of NO12G00070 vs. NCBI_GenBank
Match: WP_039727861.1 (iron ABC transporter substrate-binding protein [Lyngbya confervoides] >KIF15661.1 iron ABC transporter substrate-binding protein [Aphanocapsa montana BDHKU210001] >KIF40583.1 iron ABC transporter substrate-binding protein [Lyngbya confervoides BDU141951])

HSP 1 Score: 73.2 bits (178), Expect = 9.600e-10
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 0
Query:   90 AQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGI--RSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRPPKK 181
            A  GANLR       +D+Y L+ KM NC G GQCGTCVV++T  S  +  R++ E  K+ K       E  RLACQT V  G+ T+  +P KK
Sbjct:   15 AADGANLRYKAMENDIDIYTLVGKMMNCGGYGQCGTCVVEITEGSENLSPRTQVEERKLRK-----RPENCRLACQTLVN-GDITVKTKPKKK 101          
BLAST of NO12G00070 vs. NCBI_GenBank
Match: WP_073639519.1 (iron ABC transporter substrate-binding protein [Nostoc calcicola] >OKH41797.1 iron ABC transporter substrate-binding protein [Nostoc calcicola FACHB-389])

HSP 1 Score: 73.2 bits (178), Expect = 9.600e-10
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 0
Query:   83 KELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGI--RSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRP 178
            KE   + A  GANLR       +D+Y LI KMTNC G GQCGTC+V++      +  R++ E  K+ K       E YRLACQT V  G  +++ +P
Sbjct:    8 KENKEVVAADGANLRLKAMQNNIDIYTLIGKMTNCGGYGQCGTCIVEIVEGQQNLSPRTDVENRKLKK-----KPENYRLACQTLVN-GPVSVVTKP 98          
BLAST of NO12G00070 vs. NCBI_GenBank
Match: WP_099071961.1 (iron ABC transporter substrate-binding protein [Nostoc linckia] >PHJ55839.1 iron ABC transporter substrate-binding protein [Nostoc linckia z1] >PHJ57352.1 iron ABC transporter substrate-binding protein [Nostoc linckia z3] >PHJ58605.1 iron ABC transporter substrate-binding protein [Nostoc linckia z2] >PHJ74105.1 iron ABC transporter substrate-binding protein [Nostoc linckia z4] >PHJ82604.1 iron ABC transporter substrate-binding protein [Nostoc linckia z6] >PHJ89156.1 iron ABC transporter substrate-binding protein [Nostoc linckia z7] >PHJ95475.1 iron ABC transporter substrate-binding protein [Nostoc linckia z8] >PHJ99719.1 iron ABC transporter substrate-binding protein [Nostoc linckia z9] >PHK13376.1 iron ABC transporter substrate-binding protein [Nostoc linckia z14] >PHK14327.1 iron ABC transporter substrate-binding protein [Nostoc linckia z13] >PHK29316.1 iron ABC transporter substrate-binding protein [Nostoc linckia z18] >PHK36094.1 iron ABC transporter substrate-binding protein [Nostoc linckia z15] >PHK41870.1 iron ABC transporter substrate-binding protein [Nostoc linckia z16])

HSP 1 Score: 72.0 bits (175), Expect = 2.100e-9
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 0
Query:   83 KELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGI--RSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRP 178
            KE   + A  GANLR       +D+Y LI KMTNC G GQCGTC+V++      +  R++ E  K+ K       E YRLACQT V  G  +++ +P
Sbjct:    8 KENKEVVAADGANLRLKAIQNNIDIYTLIGKMTNCGGYGQCGTCIVEIVEGQQNLSPRTDVENRKLKK-----KPENYRLACQTLVN-GPVSVVTKP 98          
BLAST of NO12G00070 vs. NCBI_GenBank
Match: BBD64301.1 (ferredoxin [Nostoc commune HK-02] >GBG18372.1 ferredoxin [Nostoc commune NIES-4072])

HSP 1 Score: 72.0 bits (175), Expect = 2.100e-9
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 0
Query:   83 KELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSEYEAAKILKGRKFGDE-EEYRLACQTSVEAGEATIMVRP 178
            KE   + A  GANLR       +D+Y  I KMTNC G+GQCGTC+V++      +    E    ++ RKF  + E YRLACQT V  G  +++ +P
Sbjct:    8 KENKEVVAADGANLRLKAMQNDIDIYKFIGKMTNCGGSGQCGTCIVEIVEGLENLSPRTE----VENRKFKKKPENYRLACQTLVN-GSVSVVTKP 98          
The following BLAST results are available for this feature:
BLAST of NO12G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26017.14.700e-4981.42ferredoxin [Nannochloropsis gaditana][more]
CBN80192.11.300e-1959.57conserved unknown protein [Ectocarpus siliculosus][more]
XP_005854309.11.700e-1473.08hypothetical protein NGA_0190300 [Nannochloropsis ... [more]
XP_005535584.15.100e-1139.42unknown [2Fe-2S] ferredoxin [Cyanidioschyzon merol... [more]
WP_073635575.17.300e-1041.18iron ABC transporter substrate-binding protein [Sc... [more]
WP_015216294.19.600e-1041.24ferredoxin [Anabaena cylindrica] >AFZ59678.1 ferre... [more]
WP_039727861.19.600e-1044.09iron ABC transporter substrate-binding protein [Ly... [more]
WP_073639519.19.600e-1041.24iron ABC transporter substrate-binding protein [No... [more]
WP_099071961.12.100e-941.24iron ABC transporter substrate-binding protein [No... [more]
BBD64301.12.100e-940.63ferredoxin [Nostoc commune HK-02] >GBG18372.1 ferr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL124nonsL124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR066ncniR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR006ngnoR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009894NSK009894Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO12G00070.1NO12G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609552gene_10063Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100150g6gene4507Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO12G00070.1NO12G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO12G00070 ID=NO12G00070|Name=NO12G00070|organism=Nannochloropsis oceanica|type=gene|length=1704bp
AAGTTATTATTACTATATATATATACCCTCCTTCTCTCTCGCTCTATAAC
TACAGGTGAATTGTCTTTCTCTGTTCAATATTTCCTGCTCTGTTCATTCT
TGGAGGAGCCATGCTGGCTTTTCTTTCCCTGAGGAGTACTGACGAGCCCT
TTCGCATTCAATCAAGAGACTTGTGTACCATAGCGTTACGACACTCGGCC
AACCGTGCTTACACGTTCTGTGTCTGTGTGTGTGTCTGGTTCGGATCCGG
CACCTACTCGAGGCTCGGAACACTCAGGCGTACAGAAGGGCGCCCTAGAA
GGGGTCATTGTCGTCGTCTCATTGCTGGCTGCAATACCAAAGTTATGTCA
GAACCTCTCGTCGACAGAGAGCATGCTTTGCTTGATTGCCTCGTACGTTT
CTCGTGTGCTTACCACACATGCGCCGTGCTCTTCAGGCATGTTCCAATCA
TGCCAATTGCTCTAGCCTGCGACAACGAATAAACAGGCGCCATGATGACG
TGGGGGCTGTATGAGTGCAAAGGCGAGCTAAAGCCTTAGTGTATGTGTTG
TCAGTGTGATTGTCGTGCCCCATCACACGACGTCGCTTCGCTTGGCAATT
TTCTCATTATCCATCCCTCCCCTTCCGTTCCCTCATAGAGCACAGGCCCC
CCACCGAGATGCCAGCCATCAGCCACGTCTCTACCTGGTCACCAGGCTTT
CTCCTACTCCTTGTCCTTCTACTTGTGCTTCCATTCCCCTACGCTTTTCT
TGTTCCCTCCCCCTTTTATCCGAACAGGAGCACCAGACGGCACGCGTCAG
ACATTGGCCCTGCCCCTGGCCCTGCCCCTGGCCCTGCTTCTGGCCCACCC
GACCTTCCCCCTCCTCCAAGgtacgtacatgcttgcaatcactgcgtggt
gacgagtgcttcaagaagggcctcagagtgtatctgcgatcggtagggta
gagtgggagagggatgtcaaagcgcgcagcgtgaagcatgcgtacaaata
tgcctgccggcattgggagggtgacgacgacaacataatggtaccacagc
ggaacttctgtcccctcaccggttagccattgatgtgacagtcaccacaa
agccatatgcctcatccctcccgtcaccgctcccttcttccctccccagC
AAGGGCATTCTAACCATTGTTGGCCCAGACGGGAAGGAGCTCTCAGTGCT
CGAGGCCCAGCCGGGCGCCAACCTGAGGAAGACGCTGCAGGCGGCCAAGG
TGGACGTATACGACTTGATAAGTAAAATGACCAACTGCAATGGgtgagga
gaggggaggaaggcgggtggatggcagggaagaagcaggggatgatgtcc
cgctgacccatattactgtgttggtgcgtcccctgtctcttcctcaagtc
gtcatcttctacggtcgcgagttaatgcgtctcttacccctcacccctcc
tcatctccctttctcatttctcatccttcagGGCGGGCCAGTGCGGCACC
TGCGTGGTGAAAGTAACTAGCCCCTCGTGGGGCATCCGCAGCGAGTACGA
GGCGGCCAAGATCCTCAAAGGGCGCAAATTCGGCGACGAAGAGGAGTACC
GGCTGGCGTGCCAAACCTCCGTAGAGGCGGGGGAGGCAACAATCATGGTG
AGGCCGCCCAAGAAGGGGAAGTAAGGGGAAGAGGGGAGGGAGGGAGGGAG
GGAG
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protein sequence of NO12G00070.1

>NO12G00070.1-protein ID=NO12G00070.1-protein|Name=NO12G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MPAISHVSTWSPGFLLLLVLLLVLPFPYAFLVPSPFYPNRSTRRHASDIG
PAPGPAPGPASGPPDLPPPPSKGILTIVGPDGKELSVLEAQPGANLRKTL
QAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSEYEAAKILKGR
KFGDEEEYRLACQTSVEAGEATIMVRPPKKGK*
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Synonyms
Publications