NO12G00070.1, NO12G00070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00070.1
Unique NameNO12G00070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1237
Alignment locationchr12:12931..14634 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:12931..14634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00070.1 vs.
Match: EWM26017.1 (ferredoxin [Nannochloropsis gaditana])

HSP 1 Score: 216.9 bits (551), Expect = 5.400e-53
Identity = 114/178 (64.04%), Postives = 138/178 (77.53%), Query Frame = 0 
Query:   14 FLLLLVLLLVLPFPYA-FLVPSPFYPNRSTRRHAS--------DIGPAPGPAPGPASGPPDLPPPPSKGILTIVGPDGKELSVLEAQPGANLRKTLQAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSEYEAAKILKGRKFGDEEEYRLACQTSVEAGEATIMVRPPKKGK 183
            FL  +    ++  P + FL+  PF     +R+H S        ++GP PGPAPGP   P   PP PSKGI+T++GPDG +L V+EA+PG+NLRKTLQA+K+DVYDL+ KMTNCNGAGQCGTCVVKVTSPSWG+RSEYEA KILKGRKFG+ EEYRLACQT+VE GEAT++VRPPKKGK
Sbjct:   11 FLFFVFFWSLISSPVSGFLLQHPF-----SRKHQSCSRCLSSPELGPLPGPAPGPPPEPS--PPLPSKGIVTVLGPDGAQLRVIEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGLRSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRPPKKGK 181
The following BLAST results are available for this feature:
BLAST of NO12G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26017.15.400e-5364.04ferredoxin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00070NO12G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00070.1NO12G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00070.1.cds1NO12G00070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00070.1.cds2NO12G00070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00070.1.cds3NO12G00070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00070.1 ID=NO12G00070.1|Name=NO12G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1237bp
AAGTTATTATTACTATATATATATACCCTCCTTCTCTCTCGCTCTATAAC
TACAGGTGAATTGTCTTTCTCTGTTCAATATTTCCTGCTCTGTTCATTCT
TGGAGGAGCCATGCTGGCTTTTCTTTCCCTGAGGAGTACTGACGAGCCCT
TTCGCATTCAATCAAGAGACTTGTGTACCATAGCGTTACGACACTCGGCC
AACCGTGCTTACACGTTCTGTGTCTGTGTGTGTGTCTGGTTCGGATCCGG
CACCTACTCGAGGCTCGGAACACTCAGGCGTACAGAAGGGCGCCCTAGAA
GGGGTCATTGTCGTCGTCTCATTGCTGGCTGCAATACCAAAGTTATGTCA
GAACCTCTCGTCGACAGAGAGCATGCTTTGCTTGATTGCCTCGTACGTTT
CTCGTGTGCTTACCACACATGCGCCGTGCTCTTCAGGCATGTTCCAATCA
TGCCAATTGCTCTAGCCTGCGACAACGAATAAACAGGCGCCATGATGACG
TGGGGGCTGTATGAGTGCAAAGGCGAGCTAAAGCCTTAGTGTATGTGTTG
TCAGTGTGATTGTCGTGCCCCATCACACGACGTCGCTTCGCTTGGCAATT
TTCTCATTATCCATCCCTCCCCTTCCGTTCCCTCATAGAGCACAGGCCCC
CCACCGAGATGCCAGCCATCAGCCACGTCTCTACCTGGTCACCAGGCTTT
CTCCTACTCCTTGTCCTTCTACTTGTGCTTCCATTCCCCTACGCTTTTCT
TGTTCCCTCCCCCTTTTATCCGAACAGGAGCACCAGACGGCACGCGTCAG
ACATTGGCCCTGCCCCTGGCCCTGCCCCTGGCCCTGCTTCTGGCCCACCC
GACCTTCCCCCTCCTCCAAGCAAGGGCATTCTAACCATTGTTGGCCCAGA
CGGGAAGGAGCTCTCAGTGCTCGAGGCCCAGCCGGGCGCCAACCTGAGGA
AGACGCTGCAGGCGGCCAAGGTGGACGTATACGACTTGATAAGTAAAATG
ACCAACTGCAATGGGGCGGGCCAGTGCGGCACCTGCGTGGTGAAAGTAAC
TAGCCCCTCGTGGGGCATCCGCAGCGAGTACGAGGCGGCCAAGATCCTCA
AAGGGCGCAAATTCGGCGACGAAGAGGAGTACCGGCTGGCGTGCCAAACC
TCCGTAGAGGCGGGGGAGGCAACAATCATGGTGAGGCCGCCCAAGAAGGG
GAAGTAAGGGGAAGAGGGGAGGGAGGGAGGGAGGGAG
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protein sequence of NO12G00070.1

>NO12G00070.1-protein ID=NO12G00070.1-protein|Name=NO12G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MPAISHVSTWSPGFLLLLVLLLVLPFPYAFLVPSPFYPNRSTRRHASDIG
PAPGPAPGPASGPPDLPPPPSKGILTIVGPDGKELSVLEAQPGANLRKTL
QAAKVDVYDLISKMTNCNGAGQCGTCVVKVTSPSWGIRSEYEAAKILKGR
KFGDEEEYRLACQTSVEAGEATIMVRPPKKGK*
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mRNA from alignment at chr12:12931..14634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00070.1 ID=NO12G00070.1|Name=NO12G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at chr12:12931..14634- (Nannochloropsis oceanica)
AAGTTATTATTACTATATATATATACCCTCCTTCTCTCTCGCTCTATAAC
TACAGGTGAATTGTCTTTCTCTGTTCAATATTTCCTGCTCTGTTCATTCT
TGGAGGAGCCATGCTGGCTTTTCTTTCCCTGAGGAGTACTGACGAGCCCT
TTCGCATTCAATCAAGAGACTTGTGTACCATAGCGTTACGACACTCGGCC
AACCGTGCTTACACGTTCTGTGTCTGTGTGTGTGTCTGGTTCGGATCCGG
CACCTACTCGAGGCTCGGAACACTCAGGCGTACAGAAGGGCGCCCTAGAA
GGGGTCATTGTCGTCGTCTCATTGCTGGCTGCAATACCAAAGTTATGTCA
GAACCTCTCGTCGACAGAGAGCATGCTTTGCTTGATTGCCTCGTACGTTT
CTCGTGTGCTTACCACACATGCGCCGTGCTCTTCAGGCATGTTCCAATCA
TGCCAATTGCTCTAGCCTGCGACAACGAATAAACAGGCGCCATGATGACG
TGGGGGCTGTATGAGTGCAAAGGCGAGCTAAAGCCTTAGTGTATGTGTTG
TCAGTGTGATTGTCGTGCCCCATCACACGACGTCGCTTCGCTTGGCAATT
TTCTCATTATCCATCCCTCCCCTTCCGTTCCCTCATAGAGCACAGGCCCC
CCACCGAGATGCCAGCCATCAGCCACGTCTCTACCTGGTCACCAGGCTTT
CTCCTACTCCTTGTCCTTCTACTTGTGCTTCCATTCCCCTACGCTTTTCT
TGTTCCCTCCCCCTTTTATCCGAACAGGAGCACCAGACGGCACGCGTCAG
ACATTGGCCCTGCCCCTGGCCCTGCCCCTGGCCCTGCTTCTGGCCCACCC
GACCTTCCCCCTCCTCCAAGGTACGTACATGCTTGCAATCACTGCGTGGT
GACGAGTGCTTCAAGAAGGGCCTCAGAGTGTATCTGCGATCGGTAGGGTA
GAGTGGGAGAGGGATGTCAAAGCGCGCAGCGTGAAGCATGCGTACAAATA
TGCCTGCCGGCATTGGGAGGGTGACGACGACAACATAATGGTACCACAGC
GGAACTTCTGTCCCCTCACCGGTTAGCCATTGATGTGACAGTCACCACAA
AGCCATATGCCTCATCCCTCCCGTCACCGCTCCCTTCTTCCCTCCCCAGC
AAGGGCATTCTAACCATTGTTGGCCCAGACGGGAAGGAGCTCTCAGTGCT
CGAGGCCCAGCCGGGCGCCAACCTGAGGAAGACGCTGCAGGCGGCCAAGG
TGGACGTATACGACTTGATAAGTAAAATGACCAACTGCAATGGGTGAGGA
GAGGGGAGGAAGGCGGGTGGATGGCAGGGAAGAAGCAGGGGATGATGTCC
CGCTGACCCATATTACTGTGTTGGTGCGTCCCCTGTCTCTTCCTCAAGTC
GTCATCTTCTACGGTCGCGAGTTAATGCGTCTCTTACCCCTCACCCCTCC
TCATCTCCCTTTCTCATTTCTCATCCTTCAGGGCGGGCCAGTGCGGCACC
TGCGTGGTGAAAGTAACTAGCCCCTCGTGGGGCATCCGCAGCGAGTACGA
GGCGGCCAAGATCCTCAAAGGGCGCAAATTCGGCGACGAAGAGGAGTACC
GGCTGGCGTGCCAAACCTCCGTAGAGGCGGGGGAGGCAACAATCATGGTG
AGGCCGCCCAAGAAGGGGAAGTAAGGGGAAGAGGGGAGGGAGGGAGGGAG
GGAG
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Coding sequence (CDS) from alignment at chr12:12931..14634-

>NO12G00070.1 ID=NO12G00070.1|Name=NO12G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr12:12931..14634- (Nannochloropsis oceanica)
ATGCCAGCCATCAGCCACGTCTCTACCTGGTCACCAGGCTTTCTCCTACT
CCTTGTCCTTCTACTTGTGCTTCCATTCCCCTACGCTTTTCTTGTTCCCT
CCCCCTTTTATCCGAACAGGAGCACCAGACGGCACGCGTCAGACATTGGC
CCTGCCCCTGGCCCTGCCCCTGGCCCTGCTTCTGGCCCACCCGACCTTCC
CCCTCCTCCAAGCAAGGGCATTCTAACCATTGTTGGCCCAGACGGGAAGG
AGCTCTCAGTGCTCGAGGCCCAGCCGGGCGCCAACCTGAGGAAGACGCTG
CAGGCGGCCAAGGTGGACGTATACGACTTGATAAGTAAAATGACCAACTG
CAATGGGGCGGGCCAGTGCGGCACCTGCGTGGTGAAAGTAACTAGCCCCT
CGTGGGGCATCCGCAGCGAGTACGAGGCGGCCAAGATCCTCAAAGGGCGC
AAATTCGGCGACGAAGAGGAGTACCGGCTGGCGTGCCAAACCTCCGTAGA
GGCGGGGGAGGCAACAATCATGGTGAGGCCGCCCAAGAAGGGGAAGTAA
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Synonyms
Publications