NO11G03510, NO11G03510 (gene) Nannochloropsis oceanica

Overview
NameNO11G03510
Unique NameNO11G03510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4181
Alignment locationchr11:1128406..1132586 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1128406..1132586 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G03510 vs. NCBI_GenBank
Match: EWM24838.1 (hypothetical protein Naga_100887g5, partial [Nannochloropsis gaditana])

HSP 1 Score: 178.3 bits (451), Expect = 4.100e-41
Identity = 92/109 (84.40%), Postives = 99/109 (90.83%), Query Frame = 0 
Query:  249 VRSINVKEELAADGRSDQDKRAAIRAELQAKADAAARVEAIAHFRACLLDTTQTETEKMQESVSWAKFGTNSLKDYKWSLIQEAIAAAERIDFSEVPSFLLAENPPVWT 358
            VRSIN+KE LA DGRS ++K+AA+RAELQAK DAAAR EAIAHFRA LL+TTQTETEKMQESVSWAKFG NSLKD+KWSLIQEAIAAAE IDFSEVPSFLL ENP VWT
Sbjct:   30 VRSINIKENLATDGRSIEEKQAAVRAELQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVVWT 138
[Close]
BLAST of NO11G03510 vs. NCBI_GenBank
Match: CBJ26884.1 (FKBP-type peptidyl-prolyl cis-trans isomerase [Ectocarpus siliculosus])

HSP 1 Score: 171.8 bits (434), Expect = 3.900e-39
Identity = 109/250 (43.60%), Postives = 144/250 (57.60%), Query Frame = 0 
Query:  106 VTLGPYKNGALVVALPKPTVTEAQVEAAVKAAGKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYISGGDPAKFSLRPGSPLPKADIKGFMLELKESQSEPLASFARAVATGMGQMETKMFEVDMPESATIEAWRGVRCKVMLLVRSINVKEELAADGRSDQDKRAAIRAE----LQAKADAAARVEAIAHFRACLLDTTQTETEKMQESVSWAKFGTNSLKDYKWSLIQEAIAAAERIDFSEVPSFLLAE 352
            V L  YK GA+ V +P   +TEAQVEAA++ + KK +KL PVRFVEEGGT+MGHTV+ +W A               G P+P A  + F LE KE   EP A+FA  +A GMGQMETK+F    PE   IE  RG +  V  +V++I  KE    + RSD + RAA+R +    ++ + D A   EA+  F   LL +     +K+  +VSWAKFG  S  D+KW+ I+E IA AE I+   V  FL  E
Sbjct:   13 VDLAEYKGGAVTVRVPLIEITEAQVEAALQKS-KKPYKLIPVRFVEEGGTKMGHTVIMNWDAKV------------DGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEVRAALRVKGEQTVKNRTDKAVD-EAVKKF---LLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRDE 245
[Close]
BLAST of NO11G03510 vs. NCBI_GenBank
Match: GAQ84143.1 (hypothetical protein KFL_001770290 [Klebsormidium nitens])

HSP 1 Score: 130.2 bits (326), Expect = 1.300e-26
Identity = 87/247 (35.22%), Postives = 131/247 (53.04%), Query Frame = 0 
Query:  103 KGAVTLGPYKNGALVVALPKPTVTEAQVEAAVKAAGKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYISGGDPAKFSLRPGSPLPKADIKGFMLELKESQSEPLASFA-RAVATGMGQMETKMFEVDMPESATIEAWRGVRCKVMLLVRSINVKEELAADGRSDQDKRAAIRAELQAKADAAARVEAIAHFRACLLDTTQTETEKMQESVSWAKFGTNSLKDYKWSLIQEAIAAAERIDFSEVPSFL 349
            K  + LGPYK+GA+ V+  K  V+  ++E A+KA   KT+    + F    G ++GH V   ++  Y  G  P    L  G+   KAD   F LEL+  + +P  +F  + V  GMGQ E+K F +  P        R V  +  + V  I +K+ L  D R +   RA I A+L+A A+           R  LL+T++ + +K+  SVSWAKFG  SL+D+KW+L+ E +A  E+I+F E  +FL
Sbjct:  101 KVKIALGPYKDGAIKVSAKKFEVSNDEIEKALKAKLGKTYDFERINFT-GSGAKIGHMVKVSFEGKYSDG--PNAGQLIRGT---KADF--FELELQPREDDPWKTFVEQIVKNGMGQEESKSFTLTFPADYKAVPLRNVAARFTVTVHEIGIKKMLEKDPRPEAAIRADIEADLRATAERKTNDLIDQEVRRVLLETSEADVDKVAASVSWAKFGEKSLQDFKWNLLLEEVARNEKIEFEEAKAFL 339
The following BLAST results are available for this feature:
BLAST of NO11G03510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM24838.14.100e-4184.40hypothetical protein Naga_100887g5, partial [Nanno... [more]
CBJ26884.13.900e-3943.60FKBP-type peptidyl-prolyl cis-trans isomerase [Ect... [more]
GAQ84143.11.300e-2635.22hypothetical protein KFL_001770290 [Klebsormidium ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL111nonsL111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR011ncniR011Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008522NSK008522Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03510.1NO11G03510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|644793gene_12006Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100887g5gene5647Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03510.1NO11G03510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03510 ID=NO11G03510|Name=NO11G03510|organism=Nannochloropsis oceanica|type=gene|length=4181bp
TGTGCCTTGTCTTCATGGGGCTGTGAGGATGTACGGTGGGAAGTGCGTGA
ATGTCTCGTCCGCTTTGAAGGACGTGGCGAGGCAATTGAAGCAAAAGCAA
GCGGCGCGTGGATGGGCGGCGATGTTCGGAGGCCGCTAGATTGTGTTTTT
ATTGTCCTACGTATGAGCAGAAAGGAGGTTTATCTCATGTTTACGTTTGG
TCGCCCTGTACCCTCCTTGGCACAATGCCCACCCGGCGCTTGCACTTACT
TAATGCTCCAGGCCCTCCCACATAACCCGACACGAGCAAGCGGGGGCAAG
CGAGTTGCCCTCGGCACTTCTTCAACCACCATGTTCCTCAACGCTATCCA
AGCGCACCTCCCACACCTCCGGTCGCTCGGCCGTGGCCATACCCCCGGTC
TATCGCTCTCACCATGACGAAGCCTGTGTTTGAGCCATCTTCCCTGTGCG
AAACATATAATCATCCCATCTCGCCAGCCTCCTCACCATTCAAGCCATAC
TTCCCCACTGCACTTCCACAGAGCACCTCAAGCCTTTGTTATATCGCTCC
CGCCGCTTTAAACCAACGCCGTCGCGTCGTCATCGTTGGTCTCCACTCGC
TTTCTCCTTTCCCCACATATCTTCCCACCGTCCTTTCTTTCTTCCTCCCC
ATCTCCTACTACCGGGTCCTCTCCCTCCACTGCTGCCTGCTTGTTGACCT
TCGAAGCCGCGCAGCCCACCTGCCCTCAGCCTCATCACCATCATGTCGCC
GCAGCAACAGCAACTCCAGGCTTTTTGTTTACAGAAAGCCTCCTCACACC
GGTCAGCCGCCAGGGACATGTTCCCCGCTTGTAAGAGCCCCCGCCATGTC
ATGCTCCTCCTCCTCGTCTTCGTCGCCGCCACCACCCAGGCCTTCCTCCT
CCCTTCCCCTTCCCTCGTTCATGTTGCTCAGGCAAGAACGATGCTGGCAA
GACAAACTGTAACGCCGACGACGACGACGAGGGTGACGGGTGCGGCCACG
AACGAGAGGGCAGACGCGGTGGACCCGGACTCCTCCAGCAGCTCGGCCAA
Ggtagagagagaagggagtgagggagggagggagggagtgctggaaggag
agagagagggaatgccgaggagagtaggtggaagaaaggctgttgggcgg
gcccataatgtggtggagaccgggctcgacggattcatagatggactcac
cttccttccctccctccttcctcaaacgtaccagGGCGCCGTCACGTTAG
GCCCCTACAAAAACGGTGCCTTGGTCGTTGCTCTGCCCAAGCCCACCGTT
ACTGAGGCCCAAGTGGAGGCGGCTGTGAAGGCAGCGGGGAAGAAGACATg
tacgtgggaaagaaggagggaggcagggagggagggagggaagaagagtg
ggcatatgcgtctccccaaaataagcgcgcgaagatagacagacgaacaa
gcagacacagtcaatccaatagatagctcacgtggtgattctctgcccgc
catttccatgcacgccccctcctgtcagTCAAGCTCACGCCGGTCCGGTT
TGTGGAGGAGGGCGGGACTCGTATGGGCCATACGGTCGTGTGCGATTGGA
AGGCCACCTACATCTCGgtacgtgctgcctccctccttcccttcctccct
ccctccggtatcgatgctcgaagacgccagtgggaaaggaaggagtcgct
gacaagggagggaggggggagggagggagggagggagggaggcaccgggc
ccgtgctcatccatcttttgccagacaaggacacatcctcaccatcgccc
tccccctccctccccccctccctccccccctccctccctccctccctccc
tccctccttccctccctccctccctccctccccagGGCGGCGACCCGGCC
AAGTTCTCCCTCCGCCCCGGGAGTCCGCTGCCCAAGGCGGACATCAAGGG
TTTTATGCTGGAGCTGAAGGAGAGCCAGAGCGAGCCACTCGCCTCCTTCG
CCCGGGCTGTGGCCACCGGCATGGgtacgtccctccctccctccatccct
ccctccttttactcccttcctccttttactccctccttccttcccttcct
tcttttactctctccctccctccctccaaccctccctccttccctccctc
ccttcctccctcccttccttccctccctccctccctcccttccttccttc
cttccttccttcctctctaccccttctgtcatcgtgtccttccgagattt
tatcgccgtggcgctaactcgcatcgcccgccctccttccctccctccct
tcctctcagGCCAAATGGAGACGAAAATGTTCGAGGTGGACATGCCAGAG
AGCGCCACCATCGAGGCGTGGCGCGGGGTCAGGTGCAAGGTCATGCTGCT
Cgtaaggagggagggagggagggagggacattgaagtccgatggttgagt
cgtagcttgattctggatattcagctcctccccattgcagaggacagaag
ggagggagggagggagggagagagggagggagggagggagggatggaagg
agggaggcaagcctactgacgtctctctctctctcttcttctctctctct
ctcccccttttcctcttcgtccagGTGCGGAGCATTAATGTGAAGGAGGA
GCTGGCGGCCGATGGGCGGTCGGACCAAGACAAACGAGCAGCCATCCGGG
CGGAGCTGCAGGCCAAGgtgaggaggagggagggagggagggagggaggg
agggagggagggagggagggagggagggagggagggagggagggagggag
ggagggagggagggagggagggatgtacttcaccagtgagccttcttgta
aggccgataggagagatgagccacatccgagaaccccgagatcaggggca
tgaaaataagggcaggtaagtgttgaacaagagaaaaatacgtgcatatt
caatcgtctgttcctccttgcctccctccctccttcccgccctcgcctca
gGCCGACGCCGCGGCGCGTGTGGAGGCCATCGCGCATTTTCGCGCCTGCC
TGTTGGACACGACGCAGACAGAGACAGAGAAGATGCAGGAGTCCGTCAGC
TGGGCCAAGTTCGGGACGAACAGCCTGAAGgtaggggggatacgggaggg
caggagggagggagggagcaggacgaggggagggagaaacgagtatttcg
atgcgccctggggacggagtagtcgtgattttgtttgatatctcctcctc
ctcctcctccgcgattgagtttgcagcctatcctgactttgttctcctct
ctccctttctcccttatccgccctcagGACTACAAGTGGAGCCTGATCCA
AGAGGCCATCGCGGCGGCCGAGCGCATTGACTTCAGCGAGGTCCCTTCCT
TCCTTCTCGCGGAGAATCCGCCCGTCTGGACTTAGGGCGAGGGAGCGAGC
GAGGGAGGGAAGGAGGGATGGCAGGTCTTGGGGGTAGGAGGAGGGGGGGT
CCGGTACATGGGCCATAAAAGGGAGGGAAAGAGGGAAAGGAGAGATGGTC
TAGGATGGCATTTACACGTCATGGGCTTTTGTGAGTCGCAGCAAAGATTA
AGTCTGGCCTCTCGCACCCGCACATGTGTGTAATTTACTTCTTTTGTGTT
TGTTTGCGTGTGCACCCATCCACGTGACTGACCACCCAGTCGTCGCATCG
CAGCTTGTATTAAGACGGAAGTAATACCCGCAAAGGTCATCGTAGGAGGA
CTATGACATGATTAGGGAGTGAGTAATGATAGCGGTCGACGTACCGTACC
TTACCGCCACGAGAGGCGCCTGAGAAAGCCAAAACAAATCTCCTCTTAAA
CCATCAGCCAGCCTCGCCGCGTTCACCATCGGTTGAAATCAGAAAAAATG
GATGGCAGGAAGATCCAGATAAAATAGATGGCAAGACAGCTATTTATGGG
GGCTCTCGAGTGAGTATCGTAGTTCATCTTTTGCCGCCAACCGTGAGTTA
CTTTTTCTCCGTACGCTGGAAAAAACACATCCTCATGAACCAAGCCGAGG
AAATATGGCACACAGTTCAATCAGTCTTCACTATCCGTCATTGGTTCTAC
CCTCCCTACCGCCTTCGAATAGATTGAGAATAAACATATATATAAAAGAA
AACTTTCTAGGGAGCAACTACGAAATCCCGC
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protein sequence of NO11G03510.1

>NO11G03510.1-protein ID=NO11G03510.1-protein|Name=NO11G03510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MSPQQQQLQAFCLQKASSHRSAARDMFPACKSPRHVMLLLLVFVAATTQA
FLLPSPSLVHVAQARTMLARQTVTPTTTTRVTGAATNERADAVDPDSSSS
SAKGAVTLGPYKNGALVVALPKPTVTEAQVEAAVKAAGKKTFKLTPVRFV
EEGGTRMGHTVVCDWKATYISGGDPAKFSLRPGSPLPKADIKGFMLELKE
SQSEPLASFARAVATGMGQMETKMFEVDMPESATIEAWRGVRCKVMLLVR
SINVKEELAADGRSDQDKRAAIRAELQAKADAAARVEAIAHFRACLLDTT
QTETEKMQESVSWAKFGTNSLKDYKWSLIQEAIAAAERIDFSEVPSFLLA
ENPPVWT*
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Synonyms
Publications