NO11G03510.1, NO11G03510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03510.1
Unique NameNO11G03510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2562
Alignment locationchr11:1128406..1132586 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1128406..1132586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03510.1 vs.
Match: EWM24838.1 (hypothetical protein Naga_100887g5, partial [Nannochloropsis gaditana])

HSP 1 Score: 178.3 bits (451), Expect = 4.100e-41
Identity = 92/109 (84.40%), Postives = 99/109 (90.83%), Query Frame = 0 
Query:  249 VRSINVKEELAADGRSDQDKRAAIRAELQAKADAAARVEAIAHFRACLLDTTQTETEKMQESVSWAKFGTNSLKDYKWSLIQEAIAAAERIDFSEVPSFLLAENPPVWT 358
            VRSIN+KE LA DGRS ++K+AA+RAELQAK DAAAR EAIAHFRA LL+TTQTETEKMQESVSWAKFG NSLKD+KWSLIQEAIAAAE IDFSEVPSFLL ENP VWT
Sbjct:   30 VRSINIKENLATDGRSIEEKQAAVRAELQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVVWT 138
The following BLAST results are available for this feature:
BLAST of NO11G03510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24838.14.100e-4184.40hypothetical protein Naga_100887g5, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03510NO11G03510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03510.1NO11G03510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03510.1.cds1NO11G03510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03510.1.cds2NO11G03510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03510.1.cds3NO11G03510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03510.1.cds4NO11G03510.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03510.1.cds5NO11G03510.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03510.1.cds6NO11G03510.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03510.1.cds7NO11G03510.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03510.1.cds8NO11G03510.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03510.1 ID=NO11G03510.1|Name=NO11G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2562bp
TGTGCCTTGTCTTCATGGGGCTGTGAGGATGTACGGTGGGAAGTGCGTGA
ATGTCTCGTCCGCTTTGAAGGACGTGGCGAGGCAATTGAAGCAAAAGCAA
GCGGCGCGTGGATGGGCGGCGATGTTCGGAGGCCGCTAGATTGTGTTTTT
ATTGTCCTACGTATGAGCAGAAAGGAGGTTTATCTCATGTTTACGTTTGG
TCGCCCTGTACCCTCCTTGGCACAATGCCCACCCGGCGCTTGCACTTACT
TAATGCTCCAGGCCCTCCCACATAACCCGACACGAGCAAGCGGGGGCAAG
CGAGTTGCCCTCGGCACTTCTTCAACCACCATGTTCCTCAACGCTATCCA
AGCGCACCTCCCACACCTCCGGTCGCTCGGCCGTGGCCATACCCCCGGTC
TATCGCTCTCACCATGACGAAGCCTGTGTTTGAGCCATCTTCCCTGTGCG
AAACATATAATCATCCCATCTCGCCAGCCTCCTCACCATTCAAGCCATAC
TTCCCCACTGCACTTCCACAGAGCACCTCAAGCCTTTGTTATATCGCTCC
CGCCGCTTTAAACCAACGCCGTCGCGTCGTCATCGTTGGTCTCCACTCGC
TTTCTCCTTTCCCCACATATCTTCCCACCGTCCTTTCTTTCTTCCTCCCC
ATCTCCTACTACCGGGTCCTCTCCCTCCACTGCTGCCTGCTTGTTGACCT
TCGAAGCCGCGCAGCCCACCTGCCCTCAGCCTCATCACCATCATGTCGCC
GCAGCAACAGCAACTCCAGGCTTTTTGTTTACAGAAAGCCTCCTCACACC
GGTCAGCCGCCAGGGACATGTTCCCCGCTTGTAAGAGCCCCCGCCATGTC
ATGCTCCTCCTCCTCGTCTTCGTCGCCGCCACCACCCAGGCCTTCCTCCT
CCCTTCCCCTTCCCTCGTTCATGTTGCTCAGGCAAGAACGATGCTGGCAA
GACAAACTGTAACGCCGACGACGACGACGAGGGTGACGGGTGCGGCCACG
AACGAGAGGGCAGACGCGGTGGACCCGGACTCCTCCAGCAGCTCGGCCAA
GGGCGCCGTCACGTTAGGCCCCTACAAAAACGGTGCCTTGGTCGTTGCTC
TGCCCAAGCCCACCGTTACTGAGGCCCAAGTGGAGGCGGCTGTGAAGGCA
GCGGGGAAGAAGACATTCAAGCTCACGCCGGTCCGGTTTGTGGAGGAGGG
CGGGACTCGTATGGGCCATACGGTCGTGTGCGATTGGAAGGCCACCTACA
TCTCGGGCGGCGACCCGGCCAAGTTCTCCCTCCGCCCCGGGAGTCCGCTG
CCCAAGGCGGACATCAAGGGTTTTATGCTGGAGCTGAAGGAGAGCCAGAG
CGAGCCACTCGCCTCCTTCGCCCGGGCTGTGGCCACCGGCATGGGCCAAA
TGGAGACGAAAATGTTCGAGGTGGACATGCCAGAGAGCGCCACCATCGAG
GCGTGGCGCGGGGTCAGGTGCAAGGTCATGCTGCTCGTGCGGAGCATTAA
TGTGAAGGAGGAGCTGGCGGCCGATGGGCGGTCGGACCAAGACAAACGAG
CAGCCATCCGGGCGGAGCTGCAGGCCAAGGCCGACGCCGCGGCGCGTGTG
GAGGCCATCGCGCATTTTCGCGCCTGCCTGTTGGACACGACGCAGACAGA
GACAGAGAAGATGCAGGAGTCCGTCAGCTGGGCCAAGTTCGGGACGAACA
GCCTGAAGGACTACAAGTGGAGCCTGATCCAAGAGGCCATCGCGGCGGCC
GAGCGCATTGACTTCAGCGAGGTCCCTTCCTTCCTTCTCGCGGAGAATCC
GCCCGTCTGGACTTAGGGCGAGGGAGCGAGCGAGGGAGGGAAGGAGGGAT
GGCAGGTCTTGGGGGTAGGAGGAGGGGGGGTCCGGTACATGGGCCATAAA
AGGGAGGGAAAGAGGGAAAGGAGAGATGGTCTAGGATGGCATTTACACGT
CATGGGCTTTTGTGAGTCGCAGCAAAGATTAAGTCTGGCCTCTCGCACCC
GCACATGTGTGTAATTTACTTCTTTTGTGTTTGTTTGCGTGTGCACCCAT
CCACGTGACTGACCACCCAGTCGTCGCATCGCAGCTTGTATTAAGACGGA
AGTAATACCCGCAAAGGTCATCGTAGGAGGACTATGACATGATTAGGGAG
TGAGTAATGATAGCGGTCGACGTACCGTACCTTACCGCCACGAGAGGCGC
CTGAGAAAGCCAAAACAAATCTCCTCTTAAACCATCAGCCAGCCTCGCCG
CGTTCACCATCGGTTGAAATCAGAAAAAATGGATGGCAGGAAGATCCAGA
TAAAATAGATGGCAAGACAGCTATTTATGGGGGCTCTCGAGTGAGTATCG
TAGTTCATCTTTTGCCGCCAACCGTGAGTTACTTTTTCTCCGTACGCTGG
AAAAAACACATCCTCATGAACCAAGCCGAGGAAATATGGCACACAGTTCA
ATCAGTCTTCACTATCCGTCATTGGTTCTACCCTCCCTACCGCCTTCGAA
TAGATTGAGAATAAACATATATATAAAAGAAAACTTTCTAGGGAGCAACT
ACGAAATCCCGC
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protein sequence of NO11G03510.1

>NO11G03510.1-protein ID=NO11G03510.1-protein|Name=NO11G03510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MSPQQQQLQAFCLQKASSHRSAARDMFPACKSPRHVMLLLLVFVAATTQA
FLLPSPSLVHVAQARTMLARQTVTPTTTTRVTGAATNERADAVDPDSSSS
SAKGAVTLGPYKNGALVVALPKPTVTEAQVEAAVKAAGKKTFKLTPVRFV
EEGGTRMGHTVVCDWKATYISGGDPAKFSLRPGSPLPKADIKGFMLELKE
SQSEPLASFARAVATGMGQMETKMFEVDMPESATIEAWRGVRCKVMLLVR
SINVKEELAADGRSDQDKRAAIRAELQAKADAAARVEAIAHFRACLLDTT
QTETEKMQESVSWAKFGTNSLKDYKWSLIQEAIAAAERIDFSEVPSFLLA
ENPPVWT*
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mRNA from alignment at chr11:1128406..1132586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03510.1 ID=NO11G03510.1|Name=NO11G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=4181bp|location=Sequence derived from alignment at chr11:1128406..1132586- (Nannochloropsis oceanica)
TGTGCCTTGTCTTCATGGGGCTGTGAGGATGTACGGTGGGAAGTGCGTGA
ATGTCTCGTCCGCTTTGAAGGACGTGGCGAGGCAATTGAAGCAAAAGCAA
GCGGCGCGTGGATGGGCGGCGATGTTCGGAGGCCGCTAGATTGTGTTTTT
ATTGTCCTACGTATGAGCAGAAAGGAGGTTTATCTCATGTTTACGTTTGG
TCGCCCTGTACCCTCCTTGGCACAATGCCCACCCGGCGCTTGCACTTACT
TAATGCTCCAGGCCCTCCCACATAACCCGACACGAGCAAGCGGGGGCAAG
CGAGTTGCCCTCGGCACTTCTTCAACCACCATGTTCCTCAACGCTATCCA
AGCGCACCTCCCACACCTCCGGTCGCTCGGCCGTGGCCATACCCCCGGTC
TATCGCTCTCACCATGACGAAGCCTGTGTTTGAGCCATCTTCCCTGTGCG
AAACATATAATCATCCCATCTCGCCAGCCTCCTCACCATTCAAGCCATAC
TTCCCCACTGCACTTCCACAGAGCACCTCAAGCCTTTGTTATATCGCTCC
CGCCGCTTTAAACCAACGCCGTCGCGTCGTCATCGTTGGTCTCCACTCGC
TTTCTCCTTTCCCCACATATCTTCCCACCGTCCTTTCTTTCTTCCTCCCC
ATCTCCTACTACCGGGTCCTCTCCCTCCACTGCTGCCTGCTTGTTGACCT
TCGAAGCCGCGCAGCCCACCTGCCCTCAGCCTCATCACCATCATGTCGCC
GCAGCAACAGCAACTCCAGGCTTTTTGTTTACAGAAAGCCTCCTCACACC
GGTCAGCCGCCAGGGACATGTTCCCCGCTTGTAAGAGCCCCCGCCATGTC
ATGCTCCTCCTCCTCGTCTTCGTCGCCGCCACCACCCAGGCCTTCCTCCT
CCCTTCCCCTTCCCTCGTTCATGTTGCTCAGGCAAGAACGATGCTGGCAA
GACAAACTGTAACGCCGACGACGACGACGAGGGTGACGGGTGCGGCCACG
AACGAGAGGGCAGACGCGGTGGACCCGGACTCCTCCAGCAGCTCGGCCAA
GGTAGAGAGAGAAGGGAGTGAGGGAGGGAGGGAGGGAGTGCTGGAAGGAG
AGAGAGAGGGAATGCCGAGGAGAGTAGGTGGAAGAAAGGCTGTTGGGCGG
GCCCATAATGTGGTGGAGACCGGGCTCGACGGATTCATAGATGGACTCAC
CTTCCTTCCCTCCCTCCTTCCTCAAACGTACCAGGGCGCCGTCACGTTAG
GCCCCTACAAAAACGGTGCCTTGGTCGTTGCTCTGCCCAAGCCCACCGTT
ACTGAGGCCCAAGTGGAGGCGGCTGTGAAGGCAGCGGGGAAGAAGACATG
TACGTGGGAAAGAAGGAGGGAGGCAGGGAGGGAGGGAGGGAAGAAGAGTG
GGCATATGCGTCTCCCCAAAATAAGCGCGCGAAGATAGACAGACGAACAA
GCAGACACAGTCAATCCAATAGATAGCTCACGTGGTGATTCTCTGCCCGC
CATTTCCATGCACGCCCCCTCCTGTCAGTCAAGCTCACGCCGGTCCGGTT
TGTGGAGGAGGGCGGGACTCGTATGGGCCATACGGTCGTGTGCGATTGGA
AGGCCACCTACATCTCGGTACGTGCTGCCTCCCTCCTTCCCTTCCTCCCT
CCCTCCGGTATCGATGCTCGAAGACGCCAGTGGGAAAGGAAGGAGTCGCT
GACAAGGGAGGGAGGGGGGAGGGAGGGAGGGAGGGAGGGAGGCACCGGGC
CCGTGCTCATCCATCTTTTGCCAGACAAGGACACATCCTCACCATCGCCC
TCCCCCTCCCTCCCCCCCTCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCCAGGGCGGCGACCCGGCC
AAGTTCTCCCTCCGCCCCGGGAGTCCGCTGCCCAAGGCGGACATCAAGGG
TTTTATGCTGGAGCTGAAGGAGAGCCAGAGCGAGCCACTCGCCTCCTTCG
CCCGGGCTGTGGCCACCGGCATGGGTACGTCCCTCCCTCCCTCCATCCCT
CCCTCCTTTTACTCCCTTCCTCCTTTTACTCCCTCCTTCCTTCCCTTCCT
TCTTTTACTCTCTCCCTCCCTCCCTCCAACCCTCCCTCCTTCCCTCCCTC
CCTTCCTCCCTCCCTTCCTTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTC
CTTCCTTCCTTCCTCTCTACCCCTTCTGTCATCGTGTCCTTCCGAGATTT
TATCGCCGTGGCGCTAACTCGCATCGCCCGCCCTCCTTCCCTCCCTCCCT
TCCTCTCAGGCCAAATGGAGACGAAAATGTTCGAGGTGGACATGCCAGAG
AGCGCCACCATCGAGGCGTGGCGCGGGGTCAGGTGCAAGGTCATGCTGCT
CGTAAGGAGGGAGGGAGGGAGGGAGGGACATTGAAGTCCGATGGTTGAGT
CGTAGCTTGATTCTGGATATTCAGCTCCTCCCCATTGCAGAGGACAGAAG
GGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGATGGAAGG
AGGGAGGCAAGCCTACTGACGTCTCTCTCTCTCTCTTCTTCTCTCTCTCT
CTCCCCCTTTTCCTCTTCGTCCAGGTGCGGAGCATTAATGTGAAGGAGGA
GCTGGCGGCCGATGGGCGGTCGGACCAAGACAAACGAGCAGCCATCCGGG
CGGAGCTGCAGGCCAAGGTGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGATGTACTTCACCAGTGAGCCTTCTTGTA
AGGCCGATAGGAGAGATGAGCCACATCCGAGAACCCCGAGATCAGGGGCA
TGAAAATAAGGGCAGGTAAGTGTTGAACAAGAGAAAAATACGTGCATATT
CAATCGTCTGTTCCTCCTTGCCTCCCTCCCTCCTTCCCGCCCTCGCCTCA
GGCCGACGCCGCGGCGCGTGTGGAGGCCATCGCGCATTTTCGCGCCTGCC
TGTTGGACACGACGCAGACAGAGACAGAGAAGATGCAGGAGTCCGTCAGC
TGGGCCAAGTTCGGGACGAACAGCCTGAAGGTAGGGGGGATACGGGAGGG
CAGGAGGGAGGGAGGGAGCAGGACGAGGGGAGGGAGAAACGAGTATTTCG
ATGCGCCCTGGGGACGGAGTAGTCGTGATTTTGTTTGATATCTCCTCCTC
CTCCTCCTCCGCGATTGAGTTTGCAGCCTATCCTGACTTTGTTCTCCTCT
CTCCCTTTCTCCCTTATCCGCCCTCAGGACTACAAGTGGAGCCTGATCCA
AGAGGCCATCGCGGCGGCCGAGCGCATTGACTTCAGCGAGGTCCCTTCCT
TCCTTCTCGCGGAGAATCCGCCCGTCTGGACTTAGGGCGAGGGAGCGAGC
GAGGGAGGGAAGGAGGGATGGCAGGTCTTGGGGGTAGGAGGAGGGGGGGT
CCGGTACATGGGCCATAAAAGGGAGGGAAAGAGGGAAAGGAGAGATGGTC
TAGGATGGCATTTACACGTCATGGGCTTTTGTGAGTCGCAGCAAAGATTA
AGTCTGGCCTCTCGCACCCGCACATGTGTGTAATTTACTTCTTTTGTGTT
TGTTTGCGTGTGCACCCATCCACGTGACTGACCACCCAGTCGTCGCATCG
CAGCTTGTATTAAGACGGAAGTAATACCCGCAAAGGTCATCGTAGGAGGA
CTATGACATGATTAGGGAGTGAGTAATGATAGCGGTCGACGTACCGTACC
TTACCGCCACGAGAGGCGCCTGAGAAAGCCAAAACAAATCTCCTCTTAAA
CCATCAGCCAGCCTCGCCGCGTTCACCATCGGTTGAAATCAGAAAAAATG
GATGGCAGGAAGATCCAGATAAAATAGATGGCAAGACAGCTATTTATGGG
GGCTCTCGAGTGAGTATCGTAGTTCATCTTTTGCCGCCAACCGTGAGTTA
CTTTTTCTCCGTACGCTGGAAAAAACACATCCTCATGAACCAAGCCGAGG
AAATATGGCACACAGTTCAATCAGTCTTCACTATCCGTCATTGGTTCTAC
CCTCCCTACCGCCTTCGAATAGATTGAGAATAAACATATATATAAAAGAA
AACTTTCTAGGGAGCAACTACGAAATCCCGC
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Coding sequence (CDS) from alignment at chr11:1128406..1132586-

>NO11G03510.1 ID=NO11G03510.1|Name=NO11G03510.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr11:1128406..1132586- (Nannochloropsis oceanica)
ATGTCGCCGCAGCAACAGCAACTCCAGGCTTTTTGTTTACAGAAAGCCTC
CTCACACCGGTCAGCCGCCAGGGACATGTTCCCCGCTTGTAAGAGCCCCC
GCCATGTCATGCTCCTCCTCCTCGTCTTCGTCGCCGCCACCACCCAGGCC
TTCCTCCTCCCTTCCCCTTCCCTCGTTCATGTTGCTCAGGCAAGAACGAT
GCTGGCAAGACAAACTGTAACGCCGACGACGACGACGAGGGTGACGGGTG
CGGCCACGAACGAGAGGGCAGACGCGGTGGACCCGGACTCCTCCAGCAGC
TCGGCCAAGGGCGCCGTCACGTTAGGCCCCTACAAAAACGGTGCCTTGGT
CGTTGCTCTGCCCAAGCCCACCGTTACTGAGGCCCAAGTGGAGGCGGCTG
TGAAGGCAGCGGGGAAGAAGACATTCAAGCTCACGCCGGTCCGGTTTGTG
GAGGAGGGCGGGACTCGTATGGGCCATACGGTCGTGTGCGATTGGAAGGC
CACCTACATCTCGGGCGGCGACCCGGCCAAGTTCTCCCTCCGCCCCGGGA
GTCCGCTGCCCAAGGCGGACATCAAGGGTTTTATGCTGGAGCTGAAGGAG
AGCCAGAGCGAGCCACTCGCCTCCTTCGCCCGGGCTGTGGCCACCGGCAT
GGGCCAAATGGAGACGAAAATGTTCGAGGTGGACATGCCAGAGAGCGCCA
CCATCGAGGCGTGGCGCGGGGTCAGGTGCAAGGTCATGCTGCTCGTGCGG
AGCATTAATGTGAAGGAGGAGCTGGCGGCCGATGGGCGGTCGGACCAAGA
CAAACGAGCAGCCATCCGGGCGGAGCTGCAGGCCAAGGCCGACGCCGCGG
CGCGTGTGGAGGCCATCGCGCATTTTCGCGCCTGCCTGTTGGACACGACG
CAGACAGAGACAGAGAAGATGCAGGAGTCCGTCAGCTGGGCCAAGTTCGG
GACGAACAGCCTGAAGGACTACAAGTGGAGCCTGATCCAAGAGGCCATCG
CGGCGGCCGAGCGCATTGACTTCAGCGAGGTCCCTTCCTTCCTTCTCGCG
GAGAATCCGCCCGTCTGGACTTAG
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Synonyms
Publications