NO11G03410, NO11G03410 (gene) Nannochloropsis oceanica

Overview
NameNO11G03410
Unique NameNO11G03410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2658
Alignment locationchr11:1092336..1094993 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1092336..1094993 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO11G03410 vs. NCBI_GenBank
Match: EWM24854.1 (hypothetical protein Naga_101623g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 124.0 bits (310), Expect = 1.300e-24
Identity = 130/233 (55.79%), Postives = 144/233 (61.80%), Query Frame = 0 
Query:  265 LEAALQEPLRPYLLCKARGLNNATVALARVTAGGTGLAPNSREEKRKRCADALPAWLRGRAGRGEGLPVVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAVCAYIISPSAHEPEEEGKEGERGQAPLSLXXXXXXXXXXLSRRLSERRPRRPSVFARLASEGECKAEEGREEGKGGGMVMSEGVFDELMLYLAPVWDPARRE 498
            L+   +EPLRPYLLCK RG+  A  AL   TAGGTG APNSREEKR RCA A+PAW RGR G+GE LPV                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                +  G +G+      S            SRR + RRPRR   F +LASEG+  AE   EEG  GG  M+E VF+ELM+ LAP WDPARRE
Sbjct:    3 LQTTRREPLRPYLLCKVRGIRRAQQALQEATAGGTGCAPNSREEKRARCARAMPAWARGRVGKGEALPV-----------FDLRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGGVQGKAKAGRTS---------SVFSRRPNSRRPRRIISFKKLASEGKNAAEAMGEEGMEGG-GMTEAVFEELMMLLAPAWDPARRE 214
The following BLAST results are available for this feature:
BLAST of NO11G03410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24854.11.300e-2455.79hypothetical protein Naga_101623g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR019ncniR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03410.1NO11G03410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101623g1gene5633Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03410.1NO11G03410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03410 ID=NO11G03410|Name=NO11G03410|organism=Nannochloropsis oceanica|type=gene|length=2658bp
TGTTGTTGTTGTTGTTGTTGTTGTGTCCTTGACTGGGCTCTCGCGTGTCC
GCCACACGAATCCTGCACACGCCGCGGACGCTCACCAAGCCCTGCATTGC
TACAGGCTGCGGGGCTCTATTCTGGCCCCTGCGCCCGTCCATGCATTGGA
TATATCTATCTATCGTCGTCTTATCGAAGGAGATGTAGCGAGAAACAACA
CATGGACGAACATTAACAACCAGGCCCCTGCTTCCGAGCAGTACGCACAT
AACCAGCAACACCACGATAACGAGAGTATGATAAACACGACGATACCCAG
ATATCAAGTGCCGGTTAAAGGTGCCCGTGCTTGGTGCTTTGATCTTCAAT
CACCAGCAACAACACTTCCCCTATCCCTAGCTAACCCTACCCTTTACCCC
TATCTAACCCTAACCCTTCCTTGCCCTCCTCAACAGCCACACCGCCAACA
ATACGACAAGGTGTCCAACAATCCATGTCCCTTTCTCCGCGGCGAAGCGG
GCGACGGGCCCCTCCCCCTGCCCGCTTTGTGAATCACGACGACAAGGACC
ACGCCAACCTGAAACCCTATAACAGTGCCGGAGACGGCAAGCTTCCTCCT
CTTCCCCTCTCCGCTCTCCTGGGATCCACGGGCGTGATTCCTCCTCATCT
ACCGACTCCGCATTCAATAGAAAAACAGGCGTCCACGGTGTCGAGTTGCA
CGACAGCCGAGGCCTTCTCTTCCTCCTCTTCCTGCGACAGCGAGACCGAA
GGGGAGGAGGACGACGAAGAGGCGGAGGAGGTAGGTACCAGTAAGGAGGG
GGACAGCAAGAAAAGGAAGAATTGTACGGAAGAAAAAAAGCTGCTGGACC
TCGGGCTCTTTCCGCCTGCAGATGGGGCGGCGGGAGGAGCAGGCACACTC
GATGGGGCGGCGGGAGGAGCAGGCACACTCGACACGGCCACTACGCCGGG
CCATGATGAGACGAACCACCTCTCATCCCTCTTCATCGCCGCTCGTACTG
GCGATACGGCCATACTTCACGACCTCCTGTACTCCTCCTCTTCTCCCTTG
TCTTCCCTCCCTCCCGCTGCCTCTTCCTCCATCCTCGATACTCCCCACCC
CTCCACGGGTGAGAGCGCATTGGAGGTGGCCGCCGAGGAGGGACAAGCCC
CTATCGTCACCCTCCTACTGCAGGGAGGGGCGGATCCGATGAGAAAGAAC
AAGCAGACGGGAGGAACACCCATGGGGAAAGCTTTCTCAGGCTTGCACTT
GGAGTGCTACCGAATCCTGGAGgtgagggaggaaaggagggaggtaaagg
agggagctcaaattgtgaaaccagaaaagctgcagagtttcaaaggtttg
aaaggagaccgagaccatgcctctaaaagacgtataagcctcaccctccc
cttcctttcgtttccccgtcattcatccacagGCCGCGCTCCAAGAGCCC
CTCCGTCCCTACCTCCTCTGCAAGGCACGCGGACTCAACAACGCGACAGT
TGCTCTCGCTCGTGTAACGGCTGGAGGGACGGGGCTTGCTCCCAACAGCA
GGGAGGAGAAGAGGAAGAGGTGTGCCGACGCTCTCCCGGCGTGGCTCAGA
GGGCGGGCGGGGAGGGGGGAGGGTCTTCCTGTGGTGCTGGTCAAGCCAGC
TGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCAGCTGCCGGTGGGATAG
ATGGAGGAGGAGTGGTTAAAGAAACAGAGGGGATGGCGAAGAAGAAGATG
AAGTGGACTACGACTGAGGAGGAGGGAGGGAGGGAGGAAGGGATGGTGCG
GGAGGAGCTGTTGCGGGCGGTGTGTGCGTACATAATCTCGCCGAGTGCGC
ACGAGCCGGAGGAGGAAGGGAAGGAGGGGGAGAGAGGACAGGCACCATTA
TCCCTCCAGCAGCAGCAGCAGCCGCCGCCGCAGCCGCTTTCCCGGCGCTT
GAGCGAGCGTCGGCCTCGTCGGCCTTCGGTCTTTGCCCGCCTCGCCAGCG
AGGGGGAGTGCAAGGCAGAGGAGGGGAGGGAGGAAGGGAAAGGGGGGGGG
ATGGTCATGAGTGAGGGAGTGTTCGATGAGCTGATGCTGTACCTGGCACC
GGTGTGGGATCCGGCAAGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGG
GTGGAGGTAAATGAGTGAAGGGATGAATGTACACACCAGAATTTTGAAGG
GACGCTGACAGGGTGGGTGGAAGGGCGAGGAGTGCACAGGACGACGTGAG
AGTATAACGAATGCCATAAATCGAGTGAAAAACAATTTTTGAGGGAGAGA
GGATGGGGAGGGCTGGACAGATGTTCCCACGTGGCTTTTTGATGATGTCT
ACAAGCGCGGACACGAGAGAGATAGCAGGAGCAGGAGCGTATAAAAAGAA
GAGGGTGAGGAGGATGAGGGGATGGAGGAGGAGGAGAAAGAGGAGGGGCG
CTTGGGCGCAAGACGGCCGGTAGGATGCACTCACACCACTACTACCACCA
CCACCACGAAAAAATAAAATGAAATGGAAAAAAATGGAAAAAGAAGAGGA
TGGGGATGGGGATGTTGACGAGGACAACAAGGACGGTGACGTGACGGCAA
TGCCAAATAAGCTGAAGTATGAATAAGAGGCCCAATCATGAACTTACCAG
GGCGGGAG
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protein sequence of NO11G03410.1

>NO11G03410.1-protein ID=NO11G03410.1-protein|Name=NO11G03410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp
MSLSPRRSGRRAPPPARFVNHDDKDHANLKPYNSAGDGKLPPLPLSALLG
STGVIPPHLPTPHSIEKQASTVSSCTTAEAFSSSSSCDSETEGEEDDEEA
EEVGTSKEGDSKKRKNCTEEKKLLDLGLFPPADGAAGGAGTLDGAAGGAG
TLDTATTPGHDETNHLSSLFIAARTGDTAILHDLLYSSSSPLSSLPPAAS
SSILDTPHPSTGESALEVAAEEGQAPIVTLLLQGGADPMRKNKQTGGTPM
GKAFSGLHLECYRILEAALQEPLRPYLLCKARGLNNATVALARVTAGGTG
LAPNSREEKRKRCADALPAWLRGRAGRGEGLPVVLVKPAAAAAAAAAVAA
AAGGIDGGGVVKETEGMAKKKMKWTTTEEEGGREEGMVREELLRAVCAYI
ISPSAHEPEEEGKEGERGQAPLSLQQQQQPPPQPLSRRLSERRPRRPSVF
ARLASEGECKAEEGREEGKGGGMVMSEGVFDELMLYLAPVWDPARREGGR
EGGKEGGGK*
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Synonyms
Publications