NO11G03190, NO11G03190 (gene) Nannochloropsis oceanica

Overview
NameNO11G03190
Unique NameNO11G03190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1956
Alignment locationchr11:998275..1000230 -

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Properties
Property NameValue
DescriptionNuclear transcription factor Y, gamma
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:998275..1000230 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016602CCAAT-binding factor complex
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR027170NFYC/HAP5_su
IPR003958CBFA_NFYB_domain
Homology
[Close]
BLAST of NO11G03190 vs. NCBI_GenBank
Match: XP_005855010.1 (nuclear transcription factor Y, gamma, partial [Nannochloropsis gaditana CCMP526] >EKU21350.1 nuclear transcription factor Y, gamma, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 203.4 bits (516), Expect = 4.500e-49
Identity = 102/110 (92.73%), Postives = 108/110 (98.18%), Query Frame = 0 
Query:    3 SGAGGAVQQPYIPTDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRAWCYSERSKRRTL 113
            +GA  AVQQPYIPTDAEQAEHLQNLIRKLK+FWVEQLAEME+LSLA+EQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIR+WCYSERSKRRT+
Sbjct:    7 NGANPAVQQPYIPTDAEQAEHLQNLIRKLKDFWVEQLAEMETLSLASEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRSWCYSERSKRRTV 116
[Close]
BLAST of NO11G03190 vs. NCBI_GenBank
Match: CCA18819.1 (nuclear transcription factor Y subunit putative [Albugo laibachii Nc14])

HSP 1 Score: 169.1 bits (427), Expect = 9.500e-39
Identity = 84/119 (70.59%), Postives = 101/119 (84.87%), Query Frame = 0 
Query:   16 TDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRAWCYSERSKRRTLQREDIQAAIANADILDFLVNIV 135
            T+AE A+H   L ++LK FW++QLA+ME L + +EQDFKN+ DLPLARIKRIMKSDEDV MISAE  VLFAKACEMFILELT+R+W YSER+KRRTLQ+EDIQ AI N DI DFLV+++
Sbjct:  375 TEAEHAQHHIQLEQQLKTFWMKQLAQMEQLEVGSEQDFKNHNDLPLARIKRIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWSYSERNKRRTLQKEDIQTAIRNTDIFDFLVDVI 493
[Close]
BLAST of NO11G03190 vs. NCBI_GenBank
Match: XP_002909456.1 (nuclear transcription factor Y subunit, putative [Phytophthora infestans T30-4] >XP_008903394.1 hypothetical protein PPTG_10450 [Phytophthora parasitica INRA-310] >XP_009514082.1 hypothetical protein PHYSODRAFT_353347 [Phytophthora sojae] >EEY58270.1 nuclear transcription factor Y subunit, putative [Phytophthora infestans T30-4] >EGZ26807.1 hypothetical protein PHYSODRAFT_353347 [Phytophthora sojae] >ETI50632.1 hypothetical protein F443_05862 [Phytophthora parasitica P1569] >ETK90513.1 hypothetical protein L915_05731 [Phytophthora parasitica] >ETL43925.1 hypothetical protein L916_05667 [Phytophthora parasitica] >ETL97096.1 hypothetical protein L917_05554 [Phytophthora parasitica] >ETM50253.1 hypothetical protein L914_05670 [Phytophthora parasitica] >ETN11614.1 hypothetical protein PPTG_10450 [Phytophthora parasitica INRA-310] >ETO79354.1 hypothetical protein F444_05914 [Phytophthora parasitica P1976] >ETP20392.1 hypothetical protein F441_05867 [Phytophthora parasitica CJ01A1] >ETP48326.1 hypothetical protein F442_05904 [Phytophthora parasitica P10297] >KUF81201.1 Nuclear transcription factor Y subunit C-3 [Phytophthora nicotianae] >KUF96376.1 Nuclear transcription factor Y subunit C-3 [Phytophthora nicotianae] >OWZ12220.1 Nuclear transcription factor Y subunit [Phytophthora megakarya] >POM59333.1 Nuclear transcription factor Y subunit [Phytophthora palmivora var. palmivora] >POM63775.1 Nuclear transcription factor Y subunit [Phytophthora palmivora var. palmivora])

HSP 1 Score: 168.3 bits (425), Expect = 1.600e-38
Identity = 83/119 (69.75%), Postives = 100/119 (84.03%), Query Frame = 0 
Query:   16 TDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRAWCYSERSKRRTLQREDIQAAIANADILDFLVNIV 135
            T+AEQA+H   + ++LK FW +QL EME L + +EQDFKN+ DLPLARIKRIMKSDEDV MISAE  VLFAKACEMFILELT+R+W YSE++KRRTLQ+EDIQ AI N DI DFLV+++
Sbjct:    9 TEAEQAQHQLQMEQQLKSFWAKQLLEMEQLEVGSEQDFKNHNDLPLARIKRIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWGYSEKNKRRTLQKEDIQTAIRNTDIFDFLVDVI 127
[Close]
BLAST of NO11G03190 vs. NCBI_GenBank
Match: XP_024572935.1 (nuclear transcription factor y subunit c-9 isoform 1 [Plasmopara halstedii] >CEG36566.1 nuclear transcription factor y subunit c-9 isoform 1 [Plasmopara halstedii])

HSP 1 Score: 167.9 bits (424), Expect = 2.100e-38
Identity = 83/119 (69.75%), Postives = 100/119 (84.03%), Query Frame = 0 
Query:   16 TDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRAWCYSERSKRRTLQREDIQAAIANADILDFLVNIV 135
            T+AEQA+H   + ++LK FW +QL EME L + +EQDFKN+ DLPLARIKRIMKSDEDV MISAE  VLFAKACEMFILELT+R+W YSE++KRRTLQ+EDIQ AI N DI DFLV+++
Sbjct:    9 TEAEQAQHQLQMEQQLKAFWAKQLLEMEQLEVGSEQDFKNHNDLPLARIKRIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWGYSEKNKRRTLQKEDIQTAIRNTDIFDFLVDVI 127
[Close]
BLAST of NO11G03190 vs. NCBI_GenBank
Match: XP_008862281.1 (hypothetical protein H310_01049 [Aphanomyces invadans] >XP_009821950.1 hypothetical protein H257_00786 [Aphanomyces astaci] >ETV89550.1 hypothetical protein H257_00786 [Aphanomyces astaci] >ETW08476.1 hypothetical protein H310_01049 [Aphanomyces invadans])

HSP 1 Score: 165.2 bits (417), Expect = 1.400e-37
Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = 0 
Query:   16 TDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRAWCYSERSKRRTLQREDIQAAIANADILDFLVNIV 135
            T  E A HL  + ++LK FW  QLAEME L + +EQDFKN+ DLPLARIKRIMKSDEDV MISAE  VLFAKACEMFILELT+R+W YSE++KRRTLQ+EDIQ AI N DI DFLV+++
Sbjct:   11 TQEEHAAHLAQMEQQLKVFWAGQLAEMEKLEVGSEQDFKNHNDLPLARIKRIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWGYSEKNKRRTLQKEDIQTAIRNTDIFDFLVDVI 129
[Close]
BLAST of NO11G03190 vs. NCBI_GenBank
Match: CBJ32597.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 164.5 bits (415), Expect = 2.300e-37
Identity = 80/119 (67.23%), Postives = 98/119 (82.35%), Query Frame = 0 
Query:   16 TDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRAWCYSERSKRRTLQREDIQAAIANADILDFLVNIV 135
            +D E A +L+N+  +  +FW EQ+ EM  L + TEQDFKN+ DLPLARIKRIMKSDEDV MISAE  VLFAKACEMFILELT+R+WCYSE++KRRTLQ+EDIQAAI   +I DFLV+++
Sbjct:   12 SDEENAAYLKNMKEQQTKFWAEQMQEMNVLEIGTEQDFKNHNDLPLARIKRIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWCYSEKNKRRTLQKEDIQAAIRKTEIFDFLVDVI 130
[Close]
BLAST of NO11G03190 vs. NCBI_GenBank
Match: XP_008614020.1 (nuclear transcription factor Y, gamma [Saprolegnia diclina VS20] >XP_012196405.1 hypothetical protein SPRG_02439 [Saprolegnia parasitica CBS 223.65] >EQC32519.1 nuclear transcription factor Y, gamma [Saprolegnia diclina VS20] >KDO32741.1 hypothetical protein SPRG_02439 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 163.7 bits (413), Expect = 4.000e-37
Identity = 82/119 (68.91%), Postives = 96/119 (80.67%), Query Frame = 0 
Query:   16 TDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRAWCYSERSKRRTLQREDIQAAIANADILDFLVNIV 135
            T  E A H+  +  +LK FW  QLAEME L + +EQDFKN+ DLPLARIKRIMKSDEDV MISAE  VLFAKACEMFILELT+R+W YSE++KRRTLQ+EDIQ AI N DI DFLV+++
Sbjct:   11 TQEEHAAHMAQMEAQLKVFWAGQLAEMEKLEVGSEQDFKNHNDLPLARIKRIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWGYSEKNKRRTLQKEDIQTAIRNTDIFDFLVDVI 129
[Close]
BLAST of NO11G03190 vs. NCBI_GenBank
Match: OQR91686.1 (hypothetical protein THRCLA_08915 [Thraustotheca clavata])

HSP 1 Score: 163.7 bits (413), Expect = 4.000e-37
Identity = 82/119 (68.91%), Postives = 96/119 (80.67%), Query Frame = 0 
Query:   16 TDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRAWCYSERSKRRTLQREDIQAAIANADILDFLVNIV 135
            T  E A H+  +  +LK FW  QLAEME L + +EQDFKN+ DLPLARIKRIMKSDEDV MISAE  VLFAKACEMFILELT+R+W YSE++KRRTLQ+EDIQ AI N DI DFLV+++
Sbjct: 1104 TQEEHAAHMAQMEAQLKVFWAGQLAEMEKLEVGSEQDFKNHNDLPLARIKRIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWGYSEKNKRRTLQKEDIQTAIRNTDIFDFLVDVI 1222
[Close]
BLAST of NO11G03190 vs. NCBI_GenBank
Match: OQR99022.1 (nuclear transcription factor Y subunit [Achlya hypogyna])

HSP 1 Score: 163.7 bits (413), Expect = 4.000e-37
Identity = 82/119 (68.91%), Postives = 96/119 (80.67%), Query Frame = 0 
Query:   16 TDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRAWCYSERSKRRTLQREDIQAAIANADILDFLVNIV 135
            T  E A H+  +  +LK FW  QLAEME L + +EQDFKN+ DLPLARIKRIMKSDEDV MISAE  VLFAKACEMFILELT+R+W YSE++KRRTLQ+EDIQ AI N DI DFLV+++
Sbjct:   24 TQEEHAAHMAQMEAQLKVFWAGQLAEMEKLEVGSEQDFKNHNDLPLARIKRIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWGYSEKNKRRTLQKEDIQTAIRNTDIFDFLVDVI 142
[Close]
BLAST of NO11G03190 vs. NCBI_GenBank
Match: CBJ32596.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 162.2 bits (409), Expect = 1.200e-36
Identity = 78/111 (70.27%), Postives = 94/111 (84.68%), Query Frame = 0 
Query:   24 LQNLIRKLKEFWVEQLAEMESLSLATEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRAWCYSERSKRRTLQREDIQAAIANADILDFLVNIV 135
            ++N+  +L  FW EQ+ EME+L + TEQDFKN+ DLPLARIKRIMK DEDV MISAE  VLFAKACEMFILELT+R+WCYSE++KRRTLQ+EDIQAAI   DI DFLV+++
Sbjct:    1 MKNMQSQLNRFWAEQMQEMETLEIGTEQDFKNHNDLPLARIKRIMKCDEDVRMISAEAPVLFAKACEMFILELTLRSWCYSEKNKRRTLQKEDIQAAIRKTDIFDFLVHVI 111
The following BLAST results are available for this feature:
BLAST of NO11G03190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855010.14.500e-4992.73nuclear transcription factor Y, gamma, partial [Na... [more]
CCA18819.19.500e-3970.59nuclear transcription factor Y subunit putative [A... [more]
XP_002909456.11.600e-3869.75nuclear transcription factor Y subunit, putative [... [more]
XP_024572935.12.100e-3869.75nuclear transcription factor y subunit c-9 isoform... [more]
XP_008862281.11.400e-3769.75hypothetical protein H310_01049 [Aphanomyces invad... [more]
CBJ32597.12.300e-3767.23conserved unknown protein [Ectocarpus siliculosus][more]
XP_008614020.14.000e-3768.91nuclear transcription factor Y, gamma [Saprolegnia... [more]
OQR91686.14.000e-3768.91hypothetical protein THRCLA_08915 [Thraustotheca c... [more]
OQR99022.14.000e-3768.91nuclear transcription factor Y subunit [Achlya hyp... [more]
CBJ32596.11.200e-3670.27conserved unknown protein [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001927NSK001927Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03190.1NO11G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591815gene_5232Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03190.1NO11G03190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03190 ID=NO11G03190|Name=NO11G03190|organism=Nannochloropsis oceanica|type=gene|length=1956bp
CGCCGTTGGGAGAAGGAGGAAAAACGTTGCCCATGATTTTGGTGACGAGC
TGTGCGGGGATAGAGCGAAAACGAAAGAGGCGTGAATCATCCCAGGAGAA
TGCATTTCTTTCATACCATGATGATCCAAGAAAGAATACACACGACAAAA
AGAGAAGGGAGAAAGTGTCCGAAAGCGGACGAACAACAGGCTGGGGGGTG
GGGCTTGAGTTGACTTCACTTGATTCACGGGAGTCGTCGTCCTGTAAGGC
CTCAATTATCTGTCCGCGTTTCCAGCCAAAGCCCGTGCCACTCTCCATTT
GATTCCCCACTCCTACTTTCCAAGCCGACCAGTTGGACATTAATCAAAAG
CAGGTGCTGGTTGGGAAGGAAGAGAAGGGGTGCAAATCGGCCTGGAGAGG
CCGTTCGTTTGTGGATTGCTCGCTTCTGATGCCCTAACTCGCGCACCCAC
CGCGCACAATCACAGCATTTGACTTCTGTTTCATCAGTACGAAACCTTCA
AGAGGACTCCTTGCTTGTAAAGCAGGCCCGCTCACTTCCACCTTTTTCGT
CTTCCTCCACGCCGCACAACATCTGCATCAAGCACGCCATGAGTTCTGGT
GCAGGTGGTGCGGTACAACAACCCTACATCCCCACCGATGCCGAGCAAGC
AGAGCACTTGCAGAATTTGATCCGGAAACTCAAGGAATTTTGGGTGGAGC
AACTGGCGGAGATGGAAAGCTTGAGTCTGGCCACGGAACAGgtgcgtgta
tgtggatgtatgcgtgggtgcgtggatagcgcgtgatttggaaggaggga
gatttttgactggtgacagaagtgttcattgtgtaatttctgacatgtgc
aagcgctttgctcgtccttccacgccatgtgaaatgatcactacagtcgt
tcaaggccataaactaatcctcttttcctcccattctcactccttctccc
gccctccccgccccaataagGACTTCAAAAACTACATCGACCTCCCTCTG
GCCCGAATCAAGCGCATCATGAAAAGTGATGAAGATGTGCACATGATCAG
TGCGGAGGTCCTGGTTTTGTTCGCCAAAGCCTGCGAGATGTTTATTTTGG
AGCTGACCATCCGCGCGTGGTGCTACAGCGAGAGGAGCAAGCGCCGGACG
gtacgcctctttttttattttcctccctccctccctttcctttccttatg
ctgcattttcgacgtgtatttttcccctgctcttctcactctaatcctgc
ctcctttcctctttccccccctctcccaagTTGCAACGAGAGGATATCCA
GGCGGCCATTGCGAACGCCGATATTTTGGATTTTTTGGTAAACATCGTGT
GAACGTGGAGGGAGAGAGAGATAGGTTGATTGGAGAGGGAGTGGCAGATG
TGTTTTATATCGAGAGGGGTGCAAGAGAATAAGCCTATTTTGGATAGAGG
GAGGGAGAGAGGGAGGGAAGGTAGAAAGGACGCGGGTGTGTAGATATATC
TTGCTTCTAACCCACGGCGTTGTTCAAATATTTTATCACCAAAGGATGAA
AAAAATCTTTGCTGTGTAAAAGGATGGTGGGGGTCCCAAAGGGAGAGAGA
GGGGGGTGGCAAAGAGTGTAAGGGTCGCTGGAGAGCATGGGGACAAAGTT
TAAAATGAACAAGACCGAGAAGGAAAAAAAGGCGAAATGACAGGAAGAGA
GGAGGAAGAAGAAGAAGGAGATGGAGGAGAGCCAAGTGCACTCCGCGCAA
ATGATCACTGTGAGACGACAAGATCTGGAAGAGGGAAGGGGGCCAGGGAA
GGAGGAAGGGAAGGAAGAGGCTTCGTGCACCCGTCATACTCGCGCGGACT
ACGACCAACCGACAACGTCCAGCTGTCTCATTGACCCCTCAGAAAAGTAG
CAACCAAGCACTTCAAAGCAATCACTCACAAATGAAGGAGAAACCACAAG
CCTCAG
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protein sequence of NO11G03190.1

>NO11G03190.1-protein ID=NO11G03190.1-protein|Name=NO11G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MSSGAGGAVQQPYIPTDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATE
QDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRA
WCYSERSKRRTLQREDIQAAIANADILDFLVNIV*
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Synonyms
Publications