NO11G03190.1, NO11G03190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03190.1
Unique NameNO11G03190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1597
Alignment locationchr11:998275..1000230 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:998275..1000230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03190.1 vs.
Match: XP_005855010.1 (nuclear transcription factor Y, gamma, partial [Nannochloropsis gaditana CCMP526]; EKU21350.1 nuclear transcription factor Y, gamma, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 203.4 bits (516), Expect = 4.500e-49
Identity = 102/110 (92.73%), Postives = 108/110 (98.18%), Query Frame = 0 
Query:    3 SGAGGAVQQPYIPTDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRAWCYSERSKRRTL 113
            +GA  AVQQPYIPTDAEQAEHLQNLIRKLK+FWVEQLAEME+LSLA+EQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIR+WCYSERSKRRT+
Sbjct:    7 NGANPAVQQPYIPTDAEQAEHLQNLIRKLKDFWVEQLAEMETLSLASEQDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRSWCYSERSKRRTV 116
The following BLAST results are available for this feature:
BLAST of NO11G03190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855010.14.500e-4992.73nuclear transcription factor Y, gamma, partial [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03190NO11G03190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03190.1NO11G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03190.1.cds1NO11G03190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03190.1.cds2NO11G03190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03190.1.cds3NO11G03190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03190.1 ID=NO11G03190.1|Name=NO11G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp
CGCCGTTGGGAGAAGGAGGAAAAACGTTGCCCATGATTTTGGTGACGAGC
TGTGCGGGGATAGAGCGAAAACGAAAGAGGCGTGAATCATCCCAGGAGAA
TGCATTTCTTTCATACCATGATGATCCAAGAAAGAATACACACGACAAAA
AGAGAAGGGAGAAAGTGTCCGAAAGCGGACGAACAACAGGCTGGGGGGTG
GGGCTTGAGTTGACTTCACTTGATTCACGGGAGTCGTCGTCCTGTAAGGC
CTCAATTATCTGTCCGCGTTTCCAGCCAAAGCCCGTGCCACTCTCCATTT
GATTCCCCACTCCTACTTTCCAAGCCGACCAGTTGGACATTAATCAAAAG
CAGGTGCTGGTTGGGAAGGAAGAGAAGGGGTGCAAATCGGCCTGGAGAGG
CCGTTCGTTTGTGGATTGCTCGCTTCTGATGCCCTAACTCGCGCACCCAC
CGCGCACAATCACAGCATTTGACTTCTGTTTCATCAGTACGAAACCTTCA
AGAGGACTCCTTGCTTGTAAAGCAGGCCCGCTCACTTCCACCTTTTTCGT
CTTCCTCCACGCCGCACAACATCTGCATCAAGCACGCCATGAGTTCTGGT
GCAGGTGGTGCGGTACAACAACCCTACATCCCCACCGATGCCGAGCAAGC
AGAGCACTTGCAGAATTTGATCCGGAAACTCAAGGAATTTTGGGTGGAGC
AACTGGCGGAGATGGAAAGCTTGAGTCTGGCCACGGAACAGGACTTCAAA
AACTACATCGACCTCCCTCTGGCCCGAATCAAGCGCATCATGAAAAGTGA
TGAAGATGTGCACATGATCAGTGCGGAGGTCCTGGTTTTGTTCGCCAAAG
CCTGCGAGATGTTTATTTTGGAGCTGACCATCCGCGCGTGGTGCTACAGC
GAGAGGAGCAAGCGCCGGACGTTGCAACGAGAGGATATCCAGGCGGCCAT
TGCGAACGCCGATATTTTGGATTTTTTGGTAAACATCGTGTGAACGTGGA
GGGAGAGAGAGATAGGTTGATTGGAGAGGGAGTGGCAGATGTGTTTTATA
TCGAGAGGGGTGCAAGAGAATAAGCCTATTTTGGATAGAGGGAGGGAGAG
AGGGAGGGAAGGTAGAAAGGACGCGGGTGTGTAGATATATCTTGCTTCTA
ACCCACGGCGTTGTTCAAATATTTTATCACCAAAGGATGAAAAAAATCTT
TGCTGTGTAAAAGGATGGTGGGGGTCCCAAAGGGAGAGAGAGGGGGGTGG
CAAAGAGTGTAAGGGTCGCTGGAGAGCATGGGGACAAAGTTTAAAATGAA
CAAGACCGAGAAGGAAAAAAAGGCGAAATGACAGGAAGAGAGGAGGAAGA
AGAAGAAGGAGATGGAGGAGAGCCAAGTGCACTCCGCGCAAATGATCACT
GTGAGACGACAAGATCTGGAAGAGGGAAGGGGGCCAGGGAAGGAGGAAGG
GAAGGAAGAGGCTTCGTGCACCCGTCATACTCGCGCGGACTACGACCAAC
CGACAACGTCCAGCTGTCTCATTGACCCCTCAGAAAAGTAGCAACCAAGC
ACTTCAAAGCAATCACTCACAAATGAAGGAGAAACCACAAGCCTCAG
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protein sequence of NO11G03190.1

>NO11G03190.1-protein ID=NO11G03190.1-protein|Name=NO11G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MSSGAGGAVQQPYIPTDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATE
QDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRA
WCYSERSKRRTLQREDIQAAIANADILDFLVNIV*
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mRNA from alignment at chr11:998275..1000230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03190.1 ID=NO11G03190.1|Name=NO11G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp|location=Sequence derived from alignment at chr11:998275..1000230- (Nannochloropsis oceanica)
CGCCGTTGGGAGAAGGAGGAAAAACGTTGCCCATGATTTTGGTGACGAGC
TGTGCGGGGATAGAGCGAAAACGAAAGAGGCGTGAATCATCCCAGGAGAA
TGCATTTCTTTCATACCATGATGATCCAAGAAAGAATACACACGACAAAA
AGAGAAGGGAGAAAGTGTCCGAAAGCGGACGAACAACAGGCTGGGGGGTG
GGGCTTGAGTTGACTTCACTTGATTCACGGGAGTCGTCGTCCTGTAAGGC
CTCAATTATCTGTCCGCGTTTCCAGCCAAAGCCCGTGCCACTCTCCATTT
GATTCCCCACTCCTACTTTCCAAGCCGACCAGTTGGACATTAATCAAAAG
CAGGTGCTGGTTGGGAAGGAAGAGAAGGGGTGCAAATCGGCCTGGAGAGG
CCGTTCGTTTGTGGATTGCTCGCTTCTGATGCCCTAACTCGCGCACCCAC
CGCGCACAATCACAGCATTTGACTTCTGTTTCATCAGTACGAAACCTTCA
AGAGGACTCCTTGCTTGTAAAGCAGGCCCGCTCACTTCCACCTTTTTCGT
CTTCCTCCACGCCGCACAACATCTGCATCAAGCACGCCATGAGTTCTGGT
GCAGGTGGTGCGGTACAACAACCCTACATCCCCACCGATGCCGAGCAAGC
AGAGCACTTGCAGAATTTGATCCGGAAACTCAAGGAATTTTGGGTGGAGC
AACTGGCGGAGATGGAAAGCTTGAGTCTGGCCACGGAACAGGTGCGTGTA
TGTGGATGTATGCGTGGGTGCGTGGATAGCGCGTGATTTGGAAGGAGGGA
GATTTTTGACTGGTGACAGAAGTGTTCATTGTGTAATTTCTGACATGTGC
AAGCGCTTTGCTCGTCCTTCCACGCCATGTGAAATGATCACTACAGTCGT
TCAAGGCCATAAACTAATCCTCTTTTCCTCCCATTCTCACTCCTTCTCCC
GCCCTCCCCGCCCCAATAAGGACTTCAAAAACTACATCGACCTCCCTCTG
GCCCGAATCAAGCGCATCATGAAAAGTGATGAAGATGTGCACATGATCAG
TGCGGAGGTCCTGGTTTTGTTCGCCAAAGCCTGCGAGATGTTTATTTTGG
AGCTGACCATCCGCGCGTGGTGCTACAGCGAGAGGAGCAAGCGCCGGACG
GTACGCCTCTTTTTTTATTTTCCTCCCTCCCTCCCTTTCCTTTCCTTATG
CTGCATTTTCGACGTGTATTTTTCCCCTGCTCTTCTCACTCTAATCCTGC
CTCCTTTCCTCTTTCCCCCCCTCTCCCAAGTTGCAACGAGAGGATATCCA
GGCGGCCATTGCGAACGCCGATATTTTGGATTTTTTGGTAAACATCGTGT
GAACGTGGAGGGAGAGAGAGATAGGTTGATTGGAGAGGGAGTGGCAGATG
TGTTTTATATCGAGAGGGGTGCAAGAGAATAAGCCTATTTTGGATAGAGG
GAGGGAGAGAGGGAGGGAAGGTAGAAAGGACGCGGGTGTGTAGATATATC
TTGCTTCTAACCCACGGCGTTGTTCAAATATTTTATCACCAAAGGATGAA
AAAAATCTTTGCTGTGTAAAAGGATGGTGGGGGTCCCAAAGGGAGAGAGA
GGGGGGTGGCAAAGAGTGTAAGGGTCGCTGGAGAGCATGGGGACAAAGTT
TAAAATGAACAAGACCGAGAAGGAAAAAAAGGCGAAATGACAGGAAGAGA
GGAGGAAGAAGAAGAAGGAGATGGAGGAGAGCCAAGTGCACTCCGCGCAA
ATGATCACTGTGAGACGACAAGATCTGGAAGAGGGAAGGGGGCCAGGGAA
GGAGGAAGGGAAGGAAGAGGCTTCGTGCACCCGTCATACTCGCGCGGACT
ACGACCAACCGACAACGTCCAGCTGTCTCATTGACCCCTCAGAAAAGTAG
CAACCAAGCACTTCAAAGCAATCACTCACAAATGAAGGAGAAACCACAAG
CCTCAG
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Coding sequence (CDS) from alignment at chr11:998275..1000230-

>NO11G03190.1 ID=NO11G03190.1|Name=NO11G03190.1|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at chr11:998275..1000230- (Nannochloropsis oceanica)
ATGAGTTCTGGTGCAGGTGGTGCGGTACAACAACCCTACATCCCCACCGA
TGCCGAGCAAGCAGAGCACTTGCAGAATTTGATCCGGAAACTCAAGGAAT
TTTGGGTGGAGCAACTGGCGGAGATGGAAAGCTTGAGTCTGGCCACGGAA
CAGGACTTCAAAAACTACATCGACCTCCCTCTGGCCCGAATCAAGCGCAT
CATGAAAAGTGATGAAGATGTGCACATGATCAGTGCGGAGGTCCTGGTTT
TGTTCGCCAAAGCCTGCGAGATGTTTATTTTGGAGCTGACCATCCGCGCG
TGGTGCTACAGCGAGAGGAGCAAGCGCCGGACGTTGCAACGAGAGGATAT
CCAGGCGGCCATTGCGAACGCCGATATTTTGGATTTTTTGGTAAACATCG
TGTGA
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Synonyms
Publications