NO11G03090, NO11G03090 (gene) Nannochloropsis oceanica

Overview
NameNO11G03090
Unique NameNO11G03090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length702
Alignment locationchr11:966990..967691 -

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Properties
Property NameValue
DescriptionUracil phosphoribosyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:966990..967691 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029057PRTase-like
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Homology
BLAST of NO11G03090 vs. NCBI_GenBank
Match: EWM24887.1 (uracil phosphoribosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 312.4 bits (799), Expect = 1.200e-81
Identity = 144/218 (66.06%), Postives = 184/218 (84.40%), Query Frame = 0
Query:    5 PNSCVFVPQCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEALGLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLVPQAAVGKILIQRDESSREKLPVHYYSKLPPDIDTRFVILCDPMLGTGGSALCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEGLNEEKYIMPGLGDFGDRFYNTT 223
            P+  V VP C SFPYL+TKIRD K+SN+ FA Y+SRI+ +LAEEA+G+VPS+P  ++TPT   +AG R +++E+ LC+VSI+RAGD+LMEA R +VPQAAV KILIQRDESS EKLP  +YSK+P D+++RF ILCDPML TGGSALCAL I++Q+G V P  I+FVCVVA+PEG++A+H R+PEV++V GAID GLNE+KYI+PGLGDFGDR+YNTT
Sbjct:   47 PDDNVIVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWYNTT 264          
BLAST of NO11G03090 vs. NCBI_GenBank
Match: XP_002288515.1 (probable uracil phosphoribosyltransferase [Thalassiosira pseudonana CCMP1335] >EED93951.1 probable uracil phosphoribosyltransferase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 208.0 bits (528), Expect = 3.200e-50
Identity = 106/214 (49.53%), Postives = 149/214 (69.63%), Query Frame = 0
Query:   11 VPQCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEALGLVPSAPFPVETPTQAMFAGTRLI--EEESRLCLVSIIRAGDSLMEAARKLVPQAAVGKILIQRDESSREKLPVHYYSKLPPDI-DTRFVILCDPMLGTGGSALCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEGLNEEKYIMPGLGDFGDRFYNT 222
            V + ++   LFTKIRD +++   F  YS R M +LAEE +  +P+ P  V TPT   + G   I   +  ++C VSI+RAGDSL+E+ R+++P   VGK+ IQR+ESS  K  VH  +KLP  + +   VILCDPML TGGS++ ALDI+V++ GV P++IVF  V+  PEGL+AL + YP+V++V   +D+GLNE KYI+PGLGD+GDRF+NT
Sbjct:   18 VMKSKALAILFTKIRDEQTNAADFVNYSKRAMRLLAEETISYLPATPHTVTTPTNVPYHGQLSIVDTDPDKVCAVSIVRAGDSLLESFREIIPGLRVGKLWIQRNESSTTKEAVHSCTKLPKGMSEMTSVILCDPMLATGGSSITALDILVKEHGVQPEKIVFANVICCPEGLEALASAYPKVKIVTSWVDDGLNESKYILPGLGDYGDRFFNT 231          
BLAST of NO11G03090 vs. NCBI_GenBank
Match: OEU21918.1 (uracil phosphoribosyltransferase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 205.3 bits (521), Expect = 2.100e-49
Identity = 104/202 (51.49%), Postives = 142/202 (70.30%), Query Frame = 0
Query:   20 LFTKIRDLKSSNESFAFYSSRIMTVLAEEALGLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLVPQAAVGKILIQRDESSREKLPVHYYSKLPPDIDTRFVILCDPMLGTGGSALCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEGLNEEKYIMPGLGDFGDRFYNT 222
            LFTK+RD  +S   F  YS R M +LAE+AL   PS    + TP    F G R   + + +C VSIIR+GD+L+E  R++ P   VGKILIQRDES  EK    +YSKLPPDI  ++V+LCDPML TGGSA+ A++++V+Q  V P RI+F  ++ +PEGL+ L   YPE+++V  AID+ LN+EK+I+PGLGD+GDRF+N+
Sbjct:   31 LFTKMRDTSTSPADFVQYSKRSMRILAEDALAEFPSTEVKITTPC-GSFDGVR-GPDPTDICAVSIIRSGDALLEVVREVEPAVRVGKILIQRDESIPEKTAKLFYSKLPPDIANQYVLLCDPMLATGGSAMKAIEVLVEQYNVKPSRILFANMICAPEGLKLLGDAYPEIKIVTAAIDDCLNDEKFIVPGLGDYGDRFFNS 230          
BLAST of NO11G03090 vs. NCBI_GenBank
Match: EJK45890.1 (hypothetical protein THAOC_35475 [Thalassiosira oceanica])

HSP 1 Score: 204.5 bits (519), Expect = 3.500e-49
Identity = 101/213 (47.42%), Postives = 143/213 (67.14%), Query Frame = 0
Query:   11 VPQCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEALGLVPSAPFPVETPTQAMFAGTRLI--EEESRLCLVSIIRAGDSLMEAARKLVPQAAVGKILIQRDESSREKLPVHYYSKLPPDIDTRFVILCDPMLGTGGSALCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEGLNEEKYIMPGLGDFGDRFYNT 222
            V Q  +F  LFTKIRD K+S+  F  YS R+M +LAEE+L  +P     + TPT A + G   I   +   +C VSI+RAGDSL+E+ R++ P   VGK+ IQR+E+S EK  +H  +KLPP +    ++LCDPML +GGS+  ALD ++   GV P+R+VF  V++ PEGL  L   YP+V++V   +DE LN+ K+I+PGLGD+GDR++NT
Sbjct:   10 VVQSAAFDVLFTKIRDEKTSSADFGRYSRRLMRILAEESLSKLPKTVVDITTPTGAAYKGRLSIVDTDPDSVCAVSIVRAGDSLLESVREIAPSIRVGKMWIQRNEASAEKEAIHSCTKLPPGVKDMDIVLCDPMLASGGSSCSALDCLINTYGVDPRRVVFANVISCPEGLNRLAHEYPDVRIVTCWVDEKLNDSKFILPGLGDYGDRYFNT 222          
BLAST of NO11G03090 vs. NCBI_GenBank
Match: GAX29083.1 (uridine kinase [Fistulifera solaris])

HSP 1 Score: 203.4 bits (516), Expect = 7.900e-49
Identity = 102/209 (48.80%), Postives = 139/209 (66.51%), Query Frame = 0
Query:   13 QCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEALGLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLVPQAAVGKILIQRDESSREKLPVHYYSKLPPDIDTRFVILCDPMLGTGGSALCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEGLNEEKYIMPGLGDFGDRFYNT 222
            Q ++   LFTK+RD  +S   F  YS R+M +L E+ L  +P+     +TPT  +F G       S+ C+VSI+R+GD+L+E+ R++ P   VGKILIQRDE+S +K    +Y KLPP I    VILCDPM+ T GSA+ ALD++ Q   V P +I F  ++ +PEGL  L  +YPEV++V  AIDE LN+EK+I+PGLGDFGDRFY T
Sbjct:   13 QSKALRLLFTKLRDKNTSQVDFVQYSKRLMRLLVEDTLASLPTVEIERQTPT-GLFKGLESTTIPSQTCVVSIMRSGDALLESFREVEPAFKVGKILIQRDEASADKTAQFFYEKLPPGIHEMNVILCDPMVATAGSAIAALDLLCQVKHVDPSQITFATIICAPEGLGVLARKYPEVKIVTAAIDESLNDEKFIVPGLGDFGDRFYGT 220          
BLAST of NO11G03090 vs. NCBI_GenBank
Match: GAX16592.1 (uracil phosphoribosyltransferase [Fistulifera solaris])

HSP 1 Score: 197.2 bits (500), Expect = 5.600e-47
Identity = 100/209 (47.85%), Postives = 138/209 (66.03%), Query Frame = 0
Query:   13 QCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEALGLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLVPQAAVGKILIQRDESSREKLPVHYYSKLPPDIDTRFVILCDPMLGTGGSALCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEGLNEEKYIMPGLGDFGDRFYNT 222
            Q ++   LFTK+RD  +S   F  YS R+M +L E+ L  +P+     +TPT  +F G       S+ C+VSI+R+GD+L+E+ R++ P   VGKILIQRDE+S +K    +Y K+PP I    VILCDPM+ T GSA+ ALD++ Q   V P +I F  ++ + EGL  L  +YP V++V  AIDEGLN+EK+I+PGLGDFGDRFY T
Sbjct:   13 QSKALRLLFTKLRDKNTSQIDFVRYSKRLMHLLVEDTLVRLPTVEIEKQTPT-GLFQGLESTTIPSQTCVVSIMRSGDALLESFREVEPAFKVGKILIQRDEASADKTAQFFYEKVPPGIHKMNVILCDPMVATAGSAVAALDLLCQVKHVDPSQITFATIICATEGLGVLARKYPGVKIVTAAIDEGLNDEKFILPGLGDFGDRFYGT 220          
BLAST of NO11G03090 vs. NCBI_GenBank
Match: CBN75727.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 196.8 bits (499), Expect = 7.400e-47
Identity = 104/207 (50.24%), Postives = 142/207 (68.60%), Query Frame = 0
Query:   11 VPQCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEALGLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLVPQAAVGKILIQRDESSREKLPVHYYSKLPPDIDTRFVILCDPMLGTGGSALCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEGLNEEKYIMPGLGDFGDR 218
            V + ++  +LFT+IR+  +    F FY++R+M +LAEE +  + S+   + TPT A F+       ES +C+VSI+RAGD+L EAAR  +P A VGKILIQRDE S +K PV +Y KLP  I    V+LCDPML TGGSAL A+  +V + GV    IVF+ VV  PEG+ A+ A +PEV +V GA+D+ L+E++YI+PGLGDFGDR
Sbjct:  111 VCESKALAHLFTRIRNRDTPPPVFRFYATRMMRILAEEGIACLESSRQFITTPTAATFSSP--FVNESNVCIVSILRAGDALAEAARACIPTAPVGKILIQRDEESSDKHPVLFYKKLPSKIGKMQVLLCDPMLATGGSALMAIRCLV-EAGVKEAAIVFITVVVCPEGIGAVRAEFPEVTIVTGAMDDCLDEKRYILPGLGDFGDR 314          
BLAST of NO11G03090 vs. NCBI_GenBank
Match: KYQ31501.1 (Uracil phosphoribosyltransferase [Hypsizygus marmoreus])

HSP 1 Score: 192.6 bits (488), Expect = 1.400e-45
Identity = 101/217 (46.54%), Postives = 146/217 (67.28%), Query Frame = 0
Query:    5 PNSCVFVPQCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEALGLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLVPQAAVGKILIQRDESSREKLPVHYYSKLPPDIDTRFVILCDPMLGTGGSALCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEGLNEEKYIMPGLGDFGDRFYNT 222
            P S   +PQ      L+T IRD ++S   F FYS RI+ +L EE L  +P     VETPT A++ G   +  E ++C VSI+RAG+++    R++     +GKILIQRDE +   LP  +YSK P DI +R+V+L DPML TGGSA+ A++++++  GV  +RI+F+ ++ASPEGL    A+YP+++V+ G ID+GLNE+ YI+PGLGDFG+R Y T
Sbjct:   28 PKSVFTLPQTAQLEALYTIIRDKETSRGDFLFYSDRIIRLLVEEGLNHLPVVKRTVETPTGAIYEG---VGFEGKICGVSILRAGEAMEAGLREVCRSVRIGKILIQRDEET--ALPKLFYSKFPQDIASRYVLLLDPMLATGGSAMKAVEVLIEH-GVPEERIIFINLIASPEGLTTFCAKYPQLKVITGWIDQGLNEKAYIIPGLGDFGERRYCT 238          
BLAST of NO11G03090 vs. NCBI_GenBank
Match: EPY31626.1 (uracil phosphoribosyltransferase [Strigomonas culicis] >EPY34175.1 uracil phosphoribosyltransferase [Strigomonas culicis])

HSP 1 Score: 192.2 bits (487), Expect = 1.800e-45
Identity = 95/219 (43.38%), Postives = 144/219 (65.75%), Query Frame = 0
Query:    5 PNSCVFVPQCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEALGLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLVPQAAVGKILIQRDESSREKLP--VHYYSKLPPDIDTRFVILCDPMLGTGGSALCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEGLNEEKYIMPGLGDFGDRFYNT 222
            P     +PQ     +LFT IR++++    F FYS RIM ++ E AL L+P  P  ++TPT A++ G R   +   +  VSI+RAG+S+    R++     +GKIL+QRDE S +K P   + YSK+P D+ +R V+L DPM+ TGGSA+ A +I+ QQ  V  + I+F+ +VA+PEG++    R+P VQ +  AID+G+N+++YI+PGLGDFGDR++ T
Sbjct:   31 PGQLHLLPQTPQLHFLFTVIRNVETQRTDFVFYSERIMRLILEAALCLIPVQPCNIKTPTGAVYQGVR--PDAKGIIGVSILRAGESMERVLREMCRGVRIGKILVQRDEKSEDKSPDERYNYSKMPKDVSSRHVLLMDPMIATGGSAIKATEILTQQYAVPEENIIFLNLVAAPEGIRRYLTRFPRVQFITAAIDDGMNDQRYILPGLGDFGDRYFGT 247          
BLAST of NO11G03090 vs. NCBI_GenBank
Match: EPY33260.1 (uracil phosphoribosyltransferase [Strigomonas culicis])

HSP 1 Score: 192.2 bits (487), Expect = 1.800e-45
Identity = 95/219 (43.38%), Postives = 144/219 (65.75%), Query Frame = 0
Query:    5 PNSCVFVPQCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEALGLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLVPQAAVGKILIQRDESSREKLP--VHYYSKLPPDIDTRFVILCDPMLGTGGSALCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEGLNEEKYIMPGLGDFGDRFYNT 222
            P     +PQ     +LFT IR++++    F FYS RIM ++ E AL L+P  P  ++TPT A++ G R   +   +  VSI+RAG+S+    R++     +GKIL+QRDE S +K P   + YSK+P D+ +R V+L DPM+ TGGSA+ A +I+ QQ  V  + I+F+ +VA+PEG++    R+P VQ +  AID+G+N+++YI+PGLGDFGDR++ T
Sbjct:   22 PGQLHLLPQTPQLHFLFTVIRNVETQRTDFVFYSERIMRLILEAALCLIPVQPCNIKTPTGAVYQGVR--PDAKGIIGVSILRAGESMERVLREMCRGVRIGKILVQRDEKSEDKSPDERYNYSKMPKDVSSRHVLLMDPMIATGGSAIKATEILTQQYAVPEENIIFLNLVAAPEGIRRYLTRFPRVQFITAAIDDGMNDQRYILPGLGDFGDRYFGT 238          
The following BLAST results are available for this feature:
BLAST of NO11G03090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24887.11.200e-8166.06uracil phosphoribosyltransferase [Nannochloropsis ... [more]
XP_002288515.13.200e-5049.53probable uracil phosphoribosyltransferase [Thalass... [more]
OEU21918.12.100e-4951.49uracil phosphoribosyltransferase [Fragilariopsis c... [more]
EJK45890.13.500e-4947.42hypothetical protein THAOC_35475 [Thalassiosira oc... [more]
GAX29083.17.900e-4948.80uridine kinase [Fistulifera solaris][more]
GAX16592.15.600e-4747.85uracil phosphoribosyltransferase [Fistulifera sola... [more]
CBN75727.17.400e-4750.24conserved unknown protein [Ectocarpus siliculosus][more]
KYQ31501.11.400e-4546.54Uracil phosphoribosyltransferase [Hypsizygus marmo... [more]
EPY31626.11.800e-4543.38uracil phosphoribosyltransferase [Strigomonas culi... [more]
EPY33260.11.800e-4543.38uracil phosphoribosyltransferase [Strigomonas culi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001941NSK001941Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03090.1NO11G03090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591762gene_5216Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100116g10gene5593Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03090.1NO11G03090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03090 ID=NO11G03090|Name=NO11G03090|organism=Nannochloropsis oceanica|type=gene|length=702bp
ATGCCCACCCCACCAAACTCCTGTGTCTTCGTCCCCCAGTGCCGCTCCTT
CCCGTACCTTTTCACCAAAATCCGCGACCTGAAGAGTTCCAACGAAAGTT
TTGCCTTTTATTCCTCGCGTATCATGACGGTCTTGGCCGAAGAGGCGTTG
GGTTTGGTTCCCTCCGCCCCTTTCCCTGTCGAGACCCCAACCCAAGCAAT
GTTTGCTGGCACGCGTCTTATCGAAGAGGAAAGCCGGCTTTGCCTCGTTT
CCATCATTCGAGCGGGAGACAGTCTAATGGAAGCCGCTCGTAAACTTGTT
CCTCAGGCCGCGGTGGGGAAAATCCTGATTCAGCGTGACGAGAGCAGCCG
GGAGAAGTTGCCTGTTCATTACTACTCGAAACTCCCTCCTGACATTGATA
CTCGCTTCGTCATCCTGTGCGATCCCATGCTCGGCACGGGCGGAAGTGCA
CTGTGTGCACTTGATATAATCGTCCAACAAGGGGGCGTGTCACCGAAGCG
AATAGTGTTTGTGTGTGTGGTGGCCTCGCCGGAGGGGCTACAAGCCCTGC
ATGCGCGATACCCGGAAGTACAGGTCGTGGCAGGCGCGATAGATGAGGGG
TTGAATGAGGAGAAGTACATCATGCCGGGGCTGGGCGACTTTGGAGATCG
ATTTTATAACACCACCACCTCGACGTGGTTGAAAAAGGAGGTGGAGGGAT
AG
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protein sequence of NO11G03090.1

>NO11G03090.1-protein ID=NO11G03090.1-protein|Name=NO11G03090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MPTPPNSCVFVPQCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEAL
GLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLV
PQAAVGKILIQRDESSREKLPVHYYSKLPPDIDTRFVILCDPMLGTGGSA
LCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEG
LNEEKYIMPGLGDFGDRFYNTTTSTWLKKEVEG*
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Synonyms
Publications