NO11G03090.1, NO11G03090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03090.1
Unique NameNO11G03090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length702
Alignment locationchr11:966990..967691 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:966990..967691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03090.1 vs.
Match: EWM24887.1 (uracil phosphoribosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 312.4 bits (799), Expect = 1.200e-81
Identity = 144/218 (66.06%), Postives = 184/218 (84.40%), Query Frame = 0 
Query:    5 PNSCVFVPQCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEALGLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLVPQAAVGKILIQRDESSREKLPVHYYSKLPPDIDTRFVILCDPMLGTGGSALCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEGLNEEKYIMPGLGDFGDRFYNTT 223
            P+  V VP C SFPYL+TKIRD K+SN+ FA Y+SRI+ +LAEEA+G+VPS+P  ++TPT   +AG R +++E+ LC+VSI+RAGD+LMEA R +VPQAAV KILIQRDESS EKLP  +YSK+P D+++RF ILCDPML TGGSALCAL I++Q+G V P  I+FVCVVA+PEG++A+H R+PEV++V GAID GLNE+KYI+PGLGDFGDR+YNTT
Sbjct:   47 PDDNVIVPHCHSFPYLYTKIRDCKTSNKDFALYASRILRILAEEAVGMVPSSPCSIQTPTNTTYAGMRALDDENSLCVVSILRAGDALMEAVRSVVPQAAVAKILIQRDESSEEKLPKLFYSKIPSDVNSRFCILCDPMLATGGSALCALSILIQEGQVPPDNIIFVCVVAAPEGIRAVHTRHPEVKIVTGAIDTGLNEDKYIVPGLGDFGDRWYNTT 264
The following BLAST results are available for this feature:
BLAST of NO11G03090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24887.11.200e-8166.06uracil phosphoribosyltransferase [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03090NO11G03090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03090.1NO11G03090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03090.1.cds1NO11G03090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03090.1 ID=NO11G03090.1|Name=NO11G03090.1|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
ATGCCCACCCCACCAAACTCCTGTGTCTTCGTCCCCCAGTGCCGCTCCTT
CCCGTACCTTTTCACCAAAATCCGCGACCTGAAGAGTTCCAACGAAAGTT
TTGCCTTTTATTCCTCGCGTATCATGACGGTCTTGGCCGAAGAGGCGTTG
GGTTTGGTTCCCTCCGCCCCTTTCCCTGTCGAGACCCCAACCCAAGCAAT
GTTTGCTGGCACGCGTCTTATCGAAGAGGAAAGCCGGCTTTGCCTCGTTT
CCATCATTCGAGCGGGAGACAGTCTAATGGAAGCCGCTCGTAAACTTGTT
CCTCAGGCCGCGGTGGGGAAAATCCTGATTCAGCGTGACGAGAGCAGCCG
GGAGAAGTTGCCTGTTCATTACTACTCGAAACTCCCTCCTGACATTGATA
CTCGCTTCGTCATCCTGTGCGATCCCATGCTCGGCACGGGCGGAAGTGCA
CTGTGTGCACTTGATATAATCGTCCAACAAGGGGGCGTGTCACCGAAGCG
AATAGTGTTTGTGTGTGTGGTGGCCTCGCCGGAGGGGCTACAAGCCCTGC
ATGCGCGATACCCGGAAGTACAGGTCGTGGCAGGCGCGATAGATGAGGGG
TTGAATGAGGAGAAGTACATCATGCCGGGGCTGGGCGACTTTGGAGATCG
ATTTTATAACACCACCACCTCGACGTGGTTGAAAAAGGAGGTGGAGGGAT
AG
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protein sequence of NO11G03090.1

>NO11G03090.1-protein ID=NO11G03090.1-protein|Name=NO11G03090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MPTPPNSCVFVPQCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEAL
GLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLV
PQAAVGKILIQRDESSREKLPVHYYSKLPPDIDTRFVILCDPMLGTGGSA
LCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEG
LNEEKYIMPGLGDFGDRFYNTTTSTWLKKEVEG*
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mRNA from alignment at chr11:966990..967691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03090.1 ID=NO11G03090.1|Name=NO11G03090.1|organism=Nannochloropsis oceanica|type=mRNA|length=702bp|location=Sequence derived from alignment at chr11:966990..967691- (Nannochloropsis oceanica)
ATGCCCACCCCACCAAACTCCTGTGTCTTCGTCCCCCAGTGCCGCTCCTT
CCCGTACCTTTTCACCAAAATCCGCGACCTGAAGAGTTCCAACGAAAGTT
TTGCCTTTTATTCCTCGCGTATCATGACGGTCTTGGCCGAAGAGGCGTTG
GGTTTGGTTCCCTCCGCCCCTTTCCCTGTCGAGACCCCAACCCAAGCAAT
GTTTGCTGGCACGCGTCTTATCGAAGAGGAAAGCCGGCTTTGCCTCGTTT
CCATCATTCGAGCGGGAGACAGTCTAATGGAAGCCGCTCGTAAACTTGTT
CCTCAGGCCGCGGTGGGGAAAATCCTGATTCAGCGTGACGAGAGCAGCCG
GGAGAAGTTGCCTGTTCATTACTACTCGAAACTCCCTCCTGACATTGATA
CTCGCTTCGTCATCCTGTGCGATCCCATGCTCGGCACGGGCGGAAGTGCA
CTGTGTGCACTTGATATAATCGTCCAACAAGGGGGCGTGTCACCGAAGCG
AATAGTGTTTGTGTGTGTGGTGGCCTCGCCGGAGGGGCTACAAGCCCTGC
ATGCGCGATACCCGGAAGTACAGGTCGTGGCAGGCGCGATAGATGAGGGG
TTGAATGAGGAGAAGTACATCATGCCGGGGCTGGGCGACTTTGGAGATCG
ATTTTATAACACCACCACCTCGACGTGGTTGAAAAAGGAGGTGGAGGGAT
AG
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Coding sequence (CDS) from alignment at chr11:966990..967691-

>NO11G03090.1 ID=NO11G03090.1|Name=NO11G03090.1|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at chr11:966990..967691- (Nannochloropsis oceanica)
ATGCCCACCCCACCAAACTCCTGTGTCTTCGTCCCCCAGTGCCGCTCCTT
CCCGTACCTTTTCACCAAAATCCGCGACCTGAAGAGTTCCAACGAAAGTT
TTGCCTTTTATTCCTCGCGTATCATGACGGTCTTGGCCGAAGAGGCGTTG
GGTTTGGTTCCCTCCGCCCCTTTCCCTGTCGAGACCCCAACCCAAGCAAT
GTTTGCTGGCACGCGTCTTATCGAAGAGGAAAGCCGGCTTTGCCTCGTTT
CCATCATTCGAGCGGGAGACAGTCTAATGGAAGCCGCTCGTAAACTTGTT
CCTCAGGCCGCGGTGGGGAAAATCCTGATTCAGCGTGACGAGAGCAGCCG
GGAGAAGTTGCCTGTTCATTACTACTCGAAACTCCCTCCTGACATTGATA
CTCGCTTCGTCATCCTGTGCGATCCCATGCTCGGCACGGGCGGAAGTGCA
CTGTGTGCACTTGATATAATCGTCCAACAAGGGGGCGTGTCACCGAAGCG
AATAGTGTTTGTGTGTGTGGTGGCCTCGCCGGAGGGGCTACAAGCCCTGC
ATGCGCGATACCCGGAAGTACAGGTCGTGGCAGGCGCGATAGATGAGGGG
TTGAATGAGGAGAAGTACATCATGCCGGGGCTGGGCGACTTTGGAGATCG
ATTTTATAACACCACCACCTCGACGTGGTTGAAAAAGGAGGTGGAGGGAT
AG
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Synonyms
Publications