NO11G03080, NO11G03080 (gene) Nannochloropsis oceanica

Overview
NameNO11G03080
Unique NameNO11G03080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2658
Alignment locationchr11:964267..966924 +

Link to JBrowse

Properties
Property NameValue
DescriptionSet and mynd domain containing 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:964267..966924 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
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BLAST of NO11G03080 vs. NCBI_GenBank
Match: EWM24905.1 (set and mynd domain containing 2 [Nannochloropsis gaditana])

HSP 1 Score: 269.6 bits (688), Expect = 3.000e-68
Identity = 244/817 (29.87%), Postives = 337/817 (41.25%), Query Frame = 0 
Query:    9 PPSSMLPAFLGISLPREQQHEPEPPHPLHHPVIKARSTVVRHVYPNPDCTGPLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPSTEPRLVTKEDTGNKRIGRYTTLAPSATAAPGTVLMSAPALVAVVASPSIERVCHVCLHPPLPGQKILMCGDCHTAHYCSHGCFDQDEDMHHLLCL---RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARLSIHMLGMAVNNFGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHDDLSTVMALIAHKDAEGGRLWKEALKMARMLAEPTTAAEMEGEGKGDKEGWGSNGDLLFRVFPPEQVADLLVRMTINSHPCSVSIPSRSXXXXXXXXXXXXXXXXXXXXXXXXXILGLFPSVAGKVNHSCRPSAALSFSYTP-PQQGGKEEGKEGQ-WWHQHLRAELRAVHGLVGGEEVTYSYLSSLHFSRTERRELLKQGFHFLCGCXXXXXXXXXXXXXXKRGTQEWACLTCGGRVELMPSVGEDEGGERMKETENK------------GSMMKCINLPRQCTTLLPQHHYLQAVQRGHDLVAQAQQIMTTSFSSSLSSPPP-------------SAVKCMKDLGEWLVSAGSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLADKHPLRCEAALLLMGMGQERVRRQ--------GGREGGRMTMEEEMAVAVAAGGMELFLLGKHLEEQPQRASFLVIKAKAMVALAQDREGGRE------VWREALRFQARRLAQKAQGIYERAWGKEHVMVVGVRRMVKELE 782
            P S +L AF+G+S+P    H  E          KARS +V HV  + D  GPLL                                      F ++ P L+TK D   K  GRYT +AP A+   GT ++S+P   AV+AS  +++ C VCL       + L C  C+ A+YCS  C D+D  +H L+CL   R                                       RL++ ++G   +++                                  + +S +M L   +DAE G +WKEAL++AR L  P T AE E  G     G G  G+  +     E  A LLVR+ +N HP     P  S                          LGLF S+A  VNHSCRP A+ +    P P +    +G+ GQ WW+Q + AELRAV  +  GEEVTYSYL  LHFSR ER++ L Q F F C C         XXXXX      WAC TCGGRVE   ++ ED G +R +  E                 ++C N PR C T  P+  YL+   +G  L+ +  +  T S SSSLS P P                K M+ L +WL  +G                                    R   D HP R  AA+LL+ M Q   R +         G+     T+EE++A+AV  G + +++    LE QP  A+  ++K KAM  L Q  E G E      VWR A+R  A R  +K+  ++    G +H + +   R +K L+
Sbjct:    6 PSSFLLAAFVGVSVP---DHGTETSSSAGS---KARS-IVEHVNLSGDLDGPLL--LRRHHPDGSSSQAWVPPAVLLPSKPPLSSISSARAPFSASPPGLLTKTDWKGK--GRYTIIAPGASVLEGTKILSSPCFTAVIASKVLDKWCTVCLRRLPAKARRLGCKSCNMAYYCSEACLDRDGSLHDLICLFLGRVRAHARRLAANQRLPKQPETSPQPRQSSPQFSFFDTDTLRLAVQVIGSLDHSY------------HFLRSRKHTSGSIPPDHSREPPEPMSKIMDLSVQEDAEYGTIWKEALELARGLGAPMTEAEREACG-----GVGRRGE-NYLEGNAEFFAGLLVRLRVNCHPFRAYKPRNS---------KLQGSDDRHHEAGGAPALGLFLSLASTVNHSCRPVASFNALIRPQPAESRNSQGESGQRWWYQDVVAELRAVRAMTAGEEVTYSYLEHLHFSRKERQDFLWQAFRFHCQC-PRCEEEGGXXXXXXXXXXXWACFTCGGRVE---AIREDTGRQRTRGQEGSKQSCGEVARVEGNDWIQCRNQPRACPTRTPESLYLRVEGQGAKLLDRGIRATTISLSSSLSRPFPVQEGNMRGGTGKDDQQKAMRALVKWLAGSGK-------------------TVGCKEGKKEEVEGSARFWNDTHPQRHMAAMLLVRMAQTGGRTEENKSTATKEGQPRPGTTVEEDVALAVGTGVLNMYMAAHGLERQPHGATLSMLKVKAMWRLVQRLERGGESVSRAQVWRLAMRHAATREGEKSLDLFRIVHGSDHPLTLEAVRALKSLD 761
The following BLAST results are available for this feature:
BLAST of NO11G03080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24905.13.000e-6829.87set and mynd domain containing 2 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001943NSK001943Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03080.1NO11G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566459gene_5215Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03080.1NO11G03080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03080 ID=NO11G03080|Name=NO11G03080|organism=Nannochloropsis oceanica|type=gene|length=2658bp
TTTTTCTTTTTACAGGGTTTGCTCTGCTTCTCAATCCCCTCAAAAACCAT
CGGACACACATCGACAGAGAAGCTTTTTGAGGGGTTTTTGCTTTTTGACG
TGTCATCTCCTCATTCTCCCCTATAATGCAGGTACCATGACATCGCACTT
AGTGTCAGGACCGCCGTCATCCATGTTACCGGCTTTTCTGGGCATCTCGT
TGCCACGCGAGCAGCAACACGAGCCCGAGCCTCCTCACCCTCTCCACCAT
CCGGTCATAAAGGCAAGATCGACGGTGGTACGACATGTGTACCCCAACCC
TGATTGCACAGGCCCCCTTCTACTTCGATGTTGCGACTCTGACGACAACA
GTAGTCAAGAATGGGCCATGCGCTCATGCTTGCTGCCGCCTTCATCCTCC
CCTGCCTCACCACCCCCACCATCCCAACCGCCAGCCTTCCCTTCTACCGA
ACCCCGCCTCGTCACCAAGGAGGACACCGGCAACAAACGTATCGGGCGTT
ACACGACACTTGCTCCCAGTGCCACTGCGGCACCAGGAACTGTGCTGATG
TCTGCGCCTGCCCTTGTGGCTGTGGTCGCGAGTCCCTCCATTGAACGCGT
TTGTCATGTTTGCCTCCATCCACCGTTGCCCGGCCAGAAAATCCTTATGT
GCGGAGACTGTCACACAGCTCATTATTGCTCCCACGGATGCTTTGATCAG
GACGAGGACATGCACCATCTGTTGTGCCTGCGCTTAAAACGACTGCGTGT
GTACGCCCATCGACGGGCGCAGGAGCGTCAAAGGGAACAGCAGCAGCAAC
CACGACCACAAGGATCTGTGTCAATGTCATCGTTCGACATGGATGCCGCA
CGTCTTTCAATTCATATGCTTGGCATGGCTGTAAACAACTTTGGAAAGCG
TGCTGCAGCAACTGCTGCAGCTAAAAGGAAGGACAGCAGCAGAAGCAGCA
GCAGCAGTAGAATTCTCTATATGCCTCCTCCATTTAGTGAGCACGATGAC
CTCAGTACGGTCATGGCTTTGATAGCACACAAAGATGCAGAAGGGGGAAG
GTTATGGAAGGAAGCATTGAAAATGGCGCGAATGCTTGCGGAGCCAACGA
CGGCTGCAGAAATGGAAGGGGAAGGGAAGGGAGATAAGGAGGGCTGGGGT
TCGAATGGGGATCTGCTATTTCGAGTGTTTCCACCTGAGCAGGTGGCTGA
CTTGTTGGTGCGGATGACGATAAACAGCCATCCCTGCTCTGTCTCCATCC
CGAGCAGGAGCAGCAGCAGCAGCACCAACAGCGGGACCATGTCTCTCAGT
CCCTCAATTCAGCAGCAGCTACAACAGCAAGTGCAAATTCTCGGCCTTTT
CCCCTCCGTGGCTGGAAAGGTCAATCACTCCTGCCGCCCCTCTGCTGCCC
TGAGCTTCAGCTACACCCCTCCACAACAGGGAGGGAAGGAGGAAGGGAAG
GAGGGACAGTGGTGGCACCAGCACCTCAGAGCGGAGCTACGGGCGGTGCA
TGGGCTGGTCGGCGGGGAGGAGGTGACATATTCTTACCTTTCCTCTCTAC
ATTTTTCAAGGACAGAGAGACGAGAGCTGTTGAAGCAGGGCTTTCATTTT
TTGTGCGGATGTTGCCGGTGTGAGGAGGAGGAGAAGGAGGAGGCGGAGGC
GAAGAAGAGAGGAACACAGGAGTGGGCATGCTTGACATGTGGAGGTCGAG
TTGAGCTGATGCCATCTGTGGGGGAGGACGAGGGTGGGGAAAGGATGAAG
GAGACAGAAAACAAAGGCTCGATGATGAAATGCATTAATTTACCCAGGCA
ATGTACTACCCTCCTCCCCCAGCACCATTACCTTCAAGCTGTCCAACGAG
GTCATGATCTTGTGGCACAAGCGCAGCAAATAATGACAACATCCTTTTCC
TCGTCCTTGTCTTCGCCTCCTCCCTCCGCTGTTAAGTGCATGAAAGACTT
GGGTGAGTGGTTGGTGTCGGCGGGGTCTCTGGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGCACGGTTGCTAGCGGACAA
GCACCCTTTGCGATGTGAGGCTGCGTTGCTCTTAATGGGTATGGGACAAG
AAAGAGTGAGGAGGCAGGGAGGGAGGGAGGGAGGGAGGATGACGATGGAG
GAGGAGATGGCCGTCGCAGTAGCAGCAGGAGGGATGGAGTTATTTTTGTT
GGGAAAGCATTTAGAAGAGCAGCCACAGAGGGCATCATTTCTAGTAATTA
AGGCAAAAGCAATGGTTGCCTTGGCGCAAGATAGGGAGGGAGGGAGGGAG
GTGTGGAGGGAGGCTTTGAGGTTCCAGGCGCGTCGTTTGGCACAAAAAGC
CCAAGGGATATACGAGAGGGCATGGGGGAAGGAGCATGTGATGGTCGTTG
GGGTAAGGAGAATGGTAAAAGAGCTGGAATGAGGGATGGAAGGAGGGGGG
GAAGGGGCTATTGAGGAGAAGGAGAGAGAAGGAAGTAGACGGAGGGGAAT
GTGAAAAGGGTAGTAAAATTTATTATTTGTGAATAAGCGAGTGTCTAAAC
TTTGATATGACAGATACCAATTTATTCAAGCCAATAAGAAAAATAAAGAA
CGATGCAA
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protein sequence of NO11G03080.1

>NO11G03080.1-protein ID=NO11G03080.1-protein|Name=NO11G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=782bp
MTSHLVSGPPSSMLPAFLGISLPREQQHEPEPPHPLHHPVIKARSTVVRH
VYPNPDCTGPLLLRCCDSDDNSSQEWAMRSCLLPPSSSPASPPPPSQPPA
FPSTEPRLVTKEDTGNKRIGRYTTLAPSATAAPGTVLMSAPALVAVVASP
SIERVCHVCLHPPLPGQKILMCGDCHTAHYCSHGCFDQDEDMHHLLCLRL
KRLRVYAHRRAQERQREQQQQPRPQGSVSMSSFDMDAARLSIHMLGMAVN
NFGKRAAATAAAKRKDSSRSSSSSRILYMPPPFSEHDDLSTVMALIAHKD
AEGGRLWKEALKMARMLAEPTTAAEMEGEGKGDKEGWGSNGDLLFRVFPP
EQVADLLVRMTINSHPCSVSIPSRSSSSSTNSGTMSLSPSIQQQLQQQVQ
ILGLFPSVAGKVNHSCRPSAALSFSYTPPQQGGKEEGKEGQWWHQHLRAE
LRAVHGLVGGEEVTYSYLSSLHFSRTERRELLKQGFHFLCGCCRCEEEEK
EEAEAKKRGTQEWACLTCGGRVELMPSVGEDEGGERMKETENKGSMMKCI
NLPRQCTTLLPQHHYLQAVQRGHDLVAQAQQIMTTSFSSSLSSPPPSAVK
CMKDLGEWLVSAGSLGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEAR
LLADKHPLRCEAALLLMGMGQERVRRQGGREGGRMTMEEEMAVAVAAGGM
ELFLLGKHLEEQPQRASFLVIKAKAMVALAQDREGGREVWREALRFQARR
LAQKAQGIYERAWGKEHVMVVGVRRMVKELE*
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Synonyms
Publications