NO11G02810, NO11G02810 (gene) Nannochloropsis oceanica

Overview
NameNO11G02810
Unique NameNO11G02810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2757
Alignment locationchr11:889300..892056 -

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger, RING-type, conserved site
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:889300..892056 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0010390histone monoubiquitination
GO:0016567protein ubiquitination
GO:0010390histone monoubiquitination
GO:0006325chromatin organization
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0046872metal ion binding
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR013956E3_ubiquit_lig_Bre1
IPR024566Colicin_R_dom
IPR001841Znf_RING
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO11G02810 vs. NCBI_GenBank
Match: EWM24955.1 (Zinc finger, RING-type, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 602.8 bits (1553), Expect = 1.700e-168
Identity = 405/932 (43.45%), Postives = 518/932 (55.58%), Query Frame = 0
Query:    1 MSGFEKMKTKDREPFNFYVVKQQNRALSAAVKQKERRIIELAQTLQAQERAQQANTALVSCVDRHWRQLEGDARMLLQVLGGGDCSTGENGSGSSEGGKEEAAAG-VSTAFERVLLRGADKFLLADVTKLAEAAVVDHLDEVLKYDDES-GEGWAMTPEENVVGV--VGGQXXXXXXXXXXXXXXXXXXXXXXXXXDMAVQQRCQLTRRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCSSSSSPLVEGTQRLQAQVELYRDRLAVAKRNQHNLYKGLIRALKDRHRYRRAEDWGMIAPLEEREGVMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVNAAELTATVEALQELRSLVEKRGEELERVREEKADLNRRLTALLGEQXXXXXXXXXXXXR---------GSVSEEQWKSHPLYRQMRIEQDGLRREAQEGERRIAVLRQEVGDLQGKMQMLAQSRQEAIDAERRHFVTRTDDLLRENQQLKRVVDEYSFEVEAKRALVRQADELKAALDDERTEAGRVRELSSYQAAELKEVRAQWAMLQDRLAGREEEVARLSTQVLSQVPPEEGEGRREGRIRDLEKQLVEAREEKERLAAFQMSLFEETESLTAAHEHLSGSMQRLKTQVEEKERRNNRLQDELMRTKATEQMQVERVMTLERKQHEFERLRLEQQTQIKEMQEVIYMLKTQSAALAQAKTEAEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTVEKARFSLQEQVSGLTGRLQRVQTKLEASSEGAGXXXXXXXXXXVVGAVGGG-NAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKCPACGKHFSENDVKPIFLT 919
            MSGFEK+ T++REPFNFYVVKQQNRALSAAVKQKER+I ELA  ++ Q+RAQ+ +TALVSCV+RHWRQ+EGDAR LL++L       G+NG+G   G K + A G  S+  E+++LR AD+FLLADVTK+AEAA VD LD++L++DDE+ GEG +     +  G    GG+                         D ++Q+RC LTR+V                                                   S   S   +  + LQA+V   +DRL VA+  Q  LY+GL+RALKDRHRYR+AEDWG+++    R G                                                                     +   A+LTA ++ LQEL+ LV  RGEEL ++REEK +LNRR+T+L G+             +         G +SEEQ    P Y+ +  E+D LRRE+Q  ER++  LRQ VGDL+GK+++L +SRQ A++AER HF++RT++L RENQ L+R VDE++ E+EAKR LVRQADELK AL +ER EA  +R ++++QAAELKE RAQW+ LQ++L  RE+E  RLS QVL+ +  +E    REGR+ +L +QL EA+ EKE L AFQ SLF+ETESLTAA+                       LQDEL+++KATEQMQVER   LER+Q                                                                  QNK  A+T RAEDL +ELD VE+ RF L+E+V  LT +LQ+VQ K+E  ++GAG          +  A GGG  AAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQ CIQSNLKVRSRKCPACGKHFSENDVKPIFLT
Sbjct:    1 MSGFEKLNTEEREPFNFYVVKQQNRALSAAVKQKERQIRELAVAIREQQRAQETDTALVSCVERHWRQVEGDARRLLELL-------GDNGAGVLSGDKNDEATGCASSILEKIVLRDADRFLLADVTKVAEAAAVDPLDDILRFDDEAGGEGASGADAMDTAGANPPGGK----------RGTDQGVDEIVVAKVDKSIQERCLLTRQVLQKLVQRLEDEGKRPGGRGVRGTEEDGHGPSTSMDGPAPPAHGVGSSFTVASEGGS---DRAEMLQARVGFLQDRLTVARSCQQKLYRGLVRALKDRHRYRKAEDWGLVS----RRGAQ--------DLGQKGLRQEGGEDGGSNGHMESAGCCHDEHKMGGHKRKRSLIGAEAGADGNGKGEEGETTREAQLTAALDTLQELKQLVASRGEELTQMREEKMELNRRITSLAGQGLVDGGAGKSAPEKQEGGGIGFPGRLSEEQLVRQPPYQSLLSERDNLRRESQMKERQVLSLRQNVGDLEGKVRLLGRSRQAAVEAERGHFISRTEELTRENQSLRRFVDEHALEMEAKRVLVRQADELKVALAEERAEASGLRAITTHQAAELKEARAQWSQLQEQLKAREDEAKRLSEQVLAPLGADEA---REGRLAELTRQLEEAQGEKEGLGAFQTSLFQETESLTAAYXXXXXXXXXXXXXXXXXXXXXXXLQDELLKSKATEQMQVERASALERRQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKLLAMTSRAEDLSRELDKVERERFLLREEVGSLTRKLQKVQVKIE-PTQGAG-----AGGMGLNSATGGGREAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQPCIQSNLKVRSRKCPACGKHFSENDVKPIFLT 891          
BLAST of NO11G02810 vs. NCBI_GenBank
Match: XP_023747803.1 (E3 ubiquitin-protein ligase BRE1-like 1 [Lactuca sativa])

HSP 1 Score: 86.7 bits (213), Expect = 4.200e-13
Identity = 104/439 (23.69%), Postives = 200/439 (45.56%), Query Frame = 0
Query:  494 QEVGDLQGKMQ--MLAQSRQEAIDAERRHFVTRTDDLLRENQQLKRVVDEYSFEVEAKRALVRQAD----ELKAALDDERTEAGRVRELSSYQAAELKEVRAQWAMLQDRLAGREEE--VARLSTQVLSQVPPEEGEGRREGRIRDLEKQLVEAREEKERLAAFQMSLFEET-------ESLTAAHEHLSGSMQRLKTQVEEKERRNNRLQDELMRTKATEQMQVERVMTLERKQHEFERLRLEQQTQIKEMQEVIYMLKTQSAALAQAKTEAEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTVEKARFSLQEQVSGLTGRLQRVQTKLEASSEGAGXXXXXXXXXXVVGAVGGGNAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKCPACGKHFSENDVKPIFL 918
            +++G +Q +++    A S   ++ A+ +   T  D  ++E + L       S E++  RA +   +    ELK  LD  R E    RE    +  E K     WA +Q      +E     R+ T + ++   ++     E +I DL ++L ++++EK +L+    S  EE        E++  A++ +    Q+L  Q+ E++  N +L  E +R +      +    T ERK  +   L    + + + +++           +++ + +    +    R+ N   +T+++ T  L+ +Q+K +       DL   L+     +  ++E++     +  R++++L+ SS              VV  +      + +   ++L CSVC+ R K+ VITKCYHLFC  C+Q  ++ R RKCP C   F  NDVKP+++
Sbjct:  462 EDMGSMQTQLRKHKEASSDVHSLRADVQSLSTILDRKMKELEALSSRSAAQSAEIQRLRATIHDLEESDSELKLILDVHRRETIYSREFIEARNCEYK----AWAHVQSLNYSLDEHNLETRVKTAIEAESASQQMLAAAEAKIADLRQKLEKSKKEKYKLSDVLKSKHEENEAYLSEIETIGQAYDDIQTQNQQLLQQITERDDYNIKLVLEGVRARQLNDSLLLDKKTTERKIQQGNTLINFCEIKAERIEDQTKSCSDHVEKVSETRVQKTGALENTQRRLNDVKKTSQQLTESLDESQSKVDTSRVNLMDLQIHLEKERFEKKRVEEELECARRKHTRLRSQLDGSS--------------VVEKL----QQELKEYKEILKCSVCHDRPKEVVITKCYHLFCNTCVQKIIETRHRKCPLCTASFGPNDVKPVYI 878          
BLAST of NO11G02810 vs. NCBI_GenBank
Match: PSS24116.1 (E3 ubiquitin-protein ligase BRE1-like [Actinidia chinensis var. chinensis])

HSP 1 Score: 85.1 bits (209), Expect = 1.200e-12
Identity = 117/435 (26.90%), Postives = 200/435 (45.98%), Query Frame = 0
Query:  508 QSRQEAIDAERRHFVT---RTDDLLRENQQLKRVVDEYSFEVEAKRALVRQAD-ELKAALDDERTEAGRVRELSSYQAAELKEVRAQWAMLQDRLAGREEE--VARLSTQVLSQVPPEEGEGRREGRIRDLEKQLVEAREEKERLAAFQMSLFEET-------ESLTAAHEHLSGSMQRLKTQVEEKERRNNRLQDELMRTKATEQMQVERVMTLERKQHEFERLRLE---QQTQIKEMQEVIYMLKTQSAALAQ------AKTEAEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTVEKARFS---LQEQVSGLTGRLQRVQTKLEASSEGAGXXXXXXXXXXVVGAVGGGNAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKCPACGKHFSENDVKPIFL 918
            QS    +D + +   T   R+ D + E Q+L+ VV +           ++ +D ELK  L+  R E+   RE+   + +E K     WA +Q   +  +E     R+ T + ++   ++     E  I DL ++L  ++ EK RL+    S  EE        ES+  A++ +    Q L  Q+ E++  N +L  E +R +   Q+Q   +M  +  Q   +R R        +   ++E   M   Q   LA+      A  E  ++  ++ RK++L LR +      LE +Q+K      R    G ++D +EK RF    L+E++  +  ++ R++++++ SS              VV  +      +     ++L CS+C  R K+ VITKCYHLFC  C+Q  L+ R RKC  C   F  NDVKP+++
Sbjct:  490 QSLSTVLDRKAKELETLSARSADQVAEMQKLQAVVCD-----------LKGSDLELKLILEMYRRESTDSREVLEARDSEYK----AWACVQSLKSSLDEHNLELRVKTAIEAEASSQQRLAAAEAEIADLRQKLEASKREKSRLSDILKSKHEENEAYLSEIESIGQAYDDMQTQNQHLMQQITERDDYNIKLVLEGVRAR---QLQGALLMENDSMQKAIQRTRESVDFYDMKAARIEEQFKMCSDQVQKLAEDRFQSLATLENTQKKLLDVRKSSLQLRES------LERSQSKVE--KSRVGLAGLQID-LEKERFDKKRLEEELEIVRRKVSRLKSQMDGSS--------------VVEKL----QQELREYREILKCSICLDRPKEVVITKCYHLFCNPCVQRVLESRHRKCTVCSASFGANDVKPVYI 879          
BLAST of NO11G02810 vs. NCBI_GenBank
Match: XP_009397877.1 (PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X4 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 82.8 bits (203), Expect = 6.100e-12
Identity = 100/404 (24.75%), Postives = 174/404 (43.07%), Query Frame = 0
Query:  527 DLLRENQQLKRVVDEYSFEVEAKRALVRQAD----------ELKAALDDERTEAGRVRELSSYQAAELKEVRAQWAMLQDRLAGREEEVARLSTQVLSQVPPEEGEGRREGRIRDLEKQLVEAREEKERLAAFQMSLFEETESLTAAHEHLSGSMQRLKTQVEEKERRNNRLQDELMRTKATEQMQVERVMTLERKQHEFERLRLEQQTQIKEMQEVIYMLKTQSAALAQAKTEAEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTVEKARFSLQEQVSGLTG---RLQRVQTKLEASSEGAGXXXXXXXXXXVVGAVGGGNAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKCPACGKHFSENDVKPIFL 918
            DL   NQ+LK  ++ YS E    R ++   D           LK++LD+   E       S+ +AA    + A+ A+ Q RL   E E+  LS ++           + +  I  L   L    EE E       +   E ES+  A+E +    Q L  Q+ E++  N +L  E ++ +  ++     + T+++K H+   L+     ++ +M E + +   Q   LA+           +  ++  A   T++  L+++    K        + L   L  VEK+R  + + +  L       +R++  +E  +  A           V+  +      + +    +L CS+C+ R K+ VITKC+HLFC QC+Q  +  R RKC  CG  F  NDVK I++
Sbjct:  530 DLRENNQELKLFLEMYSRESTDSRDVIESKDNEYKAWALVHSLKSSLDEHNLE-------SNVKAA----IEAE-AISQKRLTSAEAEIDELSLKL----------EKCDREISSLSDILKSKHEEGE-------AYLSEIESIGQAYEDMQTQNQHLLQQIIERDDYNTKLVMEGVQARQLQEALRWEIQTMDKKLHQANLLKDSYDLKVAQMDEQLKVWSDQVGKLAE-----------DGWQSTTAFDNTKKRFLEVQTESYKLR------QSLDGALTKVEKSRLDIADLLIELRKERFNRKRIEESMEVMTRKAAFLREQTKGSTVLQKL----RQEVKEYRGILKCSICHDRQKEVVITKCFHLFCHQCVQKTIDSRQRKCRTCGMSFGPNDVKSIYI 883          
BLAST of NO11G02810 vs. NCBI_GenBank
Match: XP_018680917.1 (PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X2 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 82.8 bits (203), Expect = 6.100e-12
Identity = 100/404 (24.75%), Postives = 174/404 (43.07%), Query Frame = 0
Query:  527 DLLRENQQLKRVVDEYSFEVEAKRALVRQAD----------ELKAALDDERTEAGRVRELSSYQAAELKEVRAQWAMLQDRLAGREEEVARLSTQVLSQVPPEEGEGRREGRIRDLEKQLVEAREEKERLAAFQMSLFEETESLTAAHEHLSGSMQRLKTQVEEKERRNNRLQDELMRTKATEQMQVERVMTLERKQHEFERLRLEQQTQIKEMQEVIYMLKTQSAALAQAKTEAEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTVEKARFSLQEQVSGLTG---RLQRVQTKLEASSEGAGXXXXXXXXXXVVGAVGGGNAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKCPACGKHFSENDVKPIFL 918
            DL   NQ+LK  ++ YS E    R ++   D           LK++LD+   E       S+ +AA    + A+ A+ Q RL   E E+  LS ++           + +  I  L   L    EE E       +   E ES+  A+E +    Q L  Q+ E++  N +L  E ++ +  ++     + T+++K H+   L+     ++ +M E + +   Q   LA+           +  ++  A   T++  L+++    K        + L   L  VEK+R  + + +  L       +R++  +E  +  A           V+  +      + +    +L CS+C+ R K+ VITKC+HLFC QC+Q  +  R RKC  CG  F  NDVK I++
Sbjct:  547 DLRENNQELKLFLEMYSRESTDSRDVIESKDNEYKAWALVHSLKSSLDEHNLE-------SNVKAA----IEAE-AISQKRLTSAEAEIDELSLKL----------EKCDREISSLSDILKSKHEEGE-------AYLSEIESIGQAYEDMQTQNQHLLQQIIERDDYNTKLVMEGVQARQLQEALRWEIQTMDKKLHQANLLKDSYDLKVAQMDEQLKVWSDQVGKLAE-----------DGWQSTTAFDNTKKRFLEVQTESYKLR------QSLDGALTKVEKSRLDIADLLIELRKERFNRKRIEESMEVMTRKAAFLREQTKGSTVLQKL----RQEVKEYRGILKCSICHDRQKEVVITKCFHLFCHQCVQKTIDSRQRKCRTCGMSFGPNDVKSIYI 900          
BLAST of NO11G02810 vs. NCBI_GenBank
Match: XP_020194850.1 (E3 ubiquitin-protein ligase BRE1-like 1 isoform X2 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 82.4 bits (202), Expect = 7.900e-12
Identity = 117/411 (28.47%), Postives = 178/411 (43.31%), Query Frame = 0
Query:  517 ERRHFVTRTDDLLRENQQLKRVVDEYSFEVEAKRALVRQAD----------ELKAALDDERTEAGRVRELSSYQAAELKEVRAQWAMLQDRLAGREEEVARLSTQVLSQVPPEEGEGRREGRIRDLEKQLVEAREEKERLAAFQMSLFEETESLTAAHEHLSGSMQRLKTQVEEKERRNNRLQDELMRTKATEQMQVERVMTLERKQHEFERLRLEQQTQIKEMQEVIYMLKTQSAALAQAKTEAEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTVEKARFSLQEQVSGLTGRLQRVQTKLEASSEGAGXXXXXXXXXXVVGAVGGGNAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKCPACGKHFSENDVKPIFL 918
            E R   +R  +L + N +LK  V+ Y  E    R ++   D           LK++LDD R E  RV+     +A             Q RLA  E ++A L  ++ S         RR+  I  L + L    EE E       +   E ES+  A+E +    Q+L  Q+ E++  N ++  E ++ K  +      +  L R   + + L    + +I ++ + + +   Q+A L++        VS    +  LA    E   L+    Q ++N    R E  G  L  +EK RFS +     L   L R  + L A +EG+           V+  V   +   NE    +L C VC  R K+ VITKCYHLFC  CIQ  L+ R R+CP+C   F  NDVKPI++
Sbjct:  330 EVRDLRSRVHELRQTNCELKLFVEMYKRESTDSRDVLESKDREYCEWARAHSLKSSLDDSRLEQ-RVKAAIEAEATS-----------QQRLANGEAQIAELRGKMES--------ARRD--IGSLSELLKSKHEEGE-------AYLSEIESIGQAYEDIQTQNQQLLQQIIERDDHNTKIFMEGVKVKQAQDTLHLELCNLNRNLRQAKGLMDLYKDKISQLDDKLKVWSEQTARLSE--DGRRHSVSSGNAQRKLADVLGEAQQLRQSMDQVQSNVGRSRLEVAGL-LVELEKDRFSKRRTEDDLES-LSRKASSLRAKTEGSS----------VLEKV---HQEVNE-YRGILKCGVCRDRQKEVVITKCYHLFCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 693          
BLAST of NO11G02810 vs. NCBI_GenBank
Match: XP_020194849.1 (E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 82.4 bits (202), Expect = 7.900e-12
Identity = 117/411 (28.47%), Postives = 178/411 (43.31%), Query Frame = 0
Query:  517 ERRHFVTRTDDLLRENQQLKRVVDEYSFEVEAKRALVRQAD----------ELKAALDDERTEAGRVRELSSYQAAELKEVRAQWAMLQDRLAGREEEVARLSTQVLSQVPPEEGEGRREGRIRDLEKQLVEAREEKERLAAFQMSLFEETESLTAAHEHLSGSMQRLKTQVEEKERRNNRLQDELMRTKATEQMQVERVMTLERKQHEFERLRLEQQTQIKEMQEVIYMLKTQSAALAQAKTEAEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTVEKARFSLQEQVSGLTGRLQRVQTKLEASSEGAGXXXXXXXXXXVVGAVGGGNAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKCPACGKHFSENDVKPIFL 918
            E R   +R  +L + N +LK  V+ Y  E    R ++   D           LK++LDD R E  RV+     +A             Q RLA  E ++A L  ++ S         RR+  I  L + L    EE E       +   E ES+  A+E +    Q+L  Q+ E++  N ++  E ++ K  +      +  L R   + + L    + +I ++ + + +   Q+A L++        VS    +  LA    E   L+    Q ++N    R E  G  L  +EK RFS +     L   L R  + L A +EG+           V+  V   +   NE    +L C VC  R K+ VITKCYHLFC  CIQ  L+ R R+CP+C   F  NDVKPI++
Sbjct:  513 EVRDLRSRVHELRQTNCELKLFVEMYKRESTDSRDVLESKDREYCEWARAHSLKSSLDDSRLEQ-RVKAAIEAEATS-----------QQRLANGEAQIAELRGKMES--------ARRD--IGSLSELLKSKHEEGE-------AYLSEIESIGQAYEDIQTQNQQLLQQIIERDDHNTKIFMEGVKVKQAQDTLHLELCNLNRNLRQAKGLMDLYKDKISQLDDKLKVWSEQTARLSE--DGRRHSVSSGNAQRKLADVLGEAQQLRQSMDQVQSNVGRSRLEVAGL-LVELEKDRFSKRRTEDDLES-LSRKASSLRAKTEGSS----------VLEKV---HQEVNE-YRGILKCGVCRDRQKEVVITKCYHLFCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 876          
BLAST of NO11G02810 vs. NCBI_GenBank
Match: XP_018680918.1 (PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X3 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 81.6 bits (200), Expect = 1.400e-11
Identity = 100/401 (24.94%), Postives = 171/401 (42.64%), Query Frame = 0
Query:  527 DLLRENQQLKRVVDEYSFEVEAKRALVRQAD----------ELKAALDDERTEAGRVRELSSYQAAELKEVRAQWAMLQDRLAGREEEVARLSTQVLSQVPPEEGEGRREGRIRDLEKQLVEAREEKERLAAFQMSLFEETESLTAAHEHLSGSMQRLKTQVEEKERRNNRLQDELMRTKATEQMQVERVMTLERKQHEFERLRLEQQTQIKEMQEVIYMLKTQSAALAQAKTEAEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTVEKARFSLQEQVSGLTGRLQRVQTKLEASSEGAGXXXXXXXXXXVVGAVGGGNAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKCPACGKHFSENDVKPIFL 918
            DL   NQ+LK  ++ YS E    R ++   D           LK++LD+   E       S+ +AA    + A+ A+ Q RL   E E+  LS ++           + +  I  L   L    EE E       +   E ES+  A+E +    Q L  Q+ E++  N +L  E ++ +  ++     + T+++K H+   L+     ++ +M E + +   Q   LA+           +  ++  A   T++  L+++    K        + L   L  VEK+R  + + +  L    +  + ++E S E                 V      + +    +L CS+C+ R K+ VITKC+HLFC QC+Q  +  R RKC  CG  F  NDVK I++
Sbjct:  530 DLRENNQELKLFLEMYSRESTDSRDVIESKDNEYKAWALVHSLKSSLDEHNLE-------SNVKAA----IEAE-AISQKRLTSAEAEIDELSLKL----------EKCDREISSLSDILKSKHEEGE-------AYLSEIESIGQAYEDMQTQNQHLLQQIIERDDYNTKLVMEGVQARQLQEALRWEIQTMDKKLHQANLLKDSYDLKVAQMDEQLKVWSDQVGKLAE-----------DGWQSTTAFDNTKKRFLEVQTESYKLR------QSLDGALTKVEKSRLDIADLLIELRKESRFNRKRIEESMEVMTRKAAFLREQTKGSTVLQKLRQEVKEYRGILKCSICHDRQKEVVITKCFHLFCHQCVQKTIDSRQRKCRTCGMSFGPNDVKSIYI 884          
BLAST of NO11G02810 vs. NCBI_GenBank
Match: XP_018680915.1 (PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Musa acuminata subsp. malaccensis] >XP_018680916.1 PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 81.6 bits (200), Expect = 1.400e-11
Identity = 100/401 (24.94%), Postives = 171/401 (42.64%), Query Frame = 0
Query:  527 DLLRENQQLKRVVDEYSFEVEAKRALVRQAD----------ELKAALDDERTEAGRVRELSSYQAAELKEVRAQWAMLQDRLAGREEEVARLSTQVLSQVPPEEGEGRREGRIRDLEKQLVEAREEKERLAAFQMSLFEETESLTAAHEHLSGSMQRLKTQVEEKERRNNRLQDELMRTKATEQMQVERVMTLERKQHEFERLRLEQQTQIKEMQEVIYMLKTQSAALAQAKTEAEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTVEKARFSLQEQVSGLTGRLQRVQTKLEASSEGAGXXXXXXXXXXVVGAVGGGNAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKCPACGKHFSENDVKPIFL 918
            DL   NQ+LK  ++ YS E    R ++   D           LK++LD+   E       S+ +AA    + A+ A+ Q RL   E E+  LS ++           + +  I  L   L    EE E       +   E ES+  A+E +    Q L  Q+ E++  N +L  E ++ +  ++     + T+++K H+   L+     ++ +M E + +   Q   LA+           +  ++  A   T++  L+++    K        + L   L  VEK+R  + + +  L    +  + ++E S E                 V      + +    +L CS+C+ R K+ VITKC+HLFC QC+Q  +  R RKC  CG  F  NDVK I++
Sbjct:  547 DLRENNQELKLFLEMYSRESTDSRDVIESKDNEYKAWALVHSLKSSLDEHNLE-------SNVKAA----IEAE-AISQKRLTSAEAEIDELSLKL----------EKCDREISSLSDILKSKHEEGE-------AYLSEIESIGQAYEDMQTQNQHLLQQIIERDDYNTKLVMEGVQARQLQEALRWEIQTMDKKLHQANLLKDSYDLKVAQMDEQLKVWSDQVGKLAE-----------DGWQSTTAFDNTKKRFLEVQTESYKLR------QSLDGALTKVEKSRLDIADLLIELRKESRFNRKRIEESMEVMTRKAAFLREQTKGSTVLQKLRQEVKEYRGILKCSICHDRQKEVVITKCFHLFCHQCVQKTIDSRQRKCRTCGMSFGPNDVKSIYI 901          
BLAST of NO11G02810 vs. NCBI_GenBank
Match: XP_018680919.1 (PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X5 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 81.6 bits (200), Expect = 1.400e-11
Identity = 100/401 (24.94%), Postives = 171/401 (42.64%), Query Frame = 0
Query:  527 DLLRENQQLKRVVDEYSFEVEAKRALVRQAD----------ELKAALDDERTEAGRVRELSSYQAAELKEVRAQWAMLQDRLAGREEEVARLSTQVLSQVPPEEGEGRREGRIRDLEKQLVEAREEKERLAAFQMSLFEETESLTAAHEHLSGSMQRLKTQVEEKERRNNRLQDELMRTKATEQMQVERVMTLERKQHEFERLRLEQQTQIKEMQEVIYMLKTQSAALAQAKTEAEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTVEKARFSLQEQVSGLTGRLQRVQTKLEASSEGAGXXXXXXXXXXVVGAVGGGNAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKCPACGKHFSENDVKPIFL 918
            DL   NQ+LK  ++ YS E    R ++   D           LK++LD+   E       S+ +AA    + A+ A+ Q RL   E E+  LS ++           + +  I  L   L    EE E       +   E ES+  A+E +    Q L  Q+ E++  N +L  E ++ +  ++     + T+++K H+   L+     ++ +M E + +   Q   LA+           +  ++  A   T++  L+++    K        + L   L  VEK+R  + + +  L    +  + ++E S E                 V      + +    +L CS+C+ R K+ VITKC+HLFC QC+Q  +  R RKC  CG  F  NDVK I++
Sbjct:  514 DLRENNQELKLFLEMYSRESTDSRDVIESKDNEYKAWALVHSLKSSLDEHNLE-------SNVKAA----IEAE-AISQKRLTSAEAEIDELSLKL----------EKCDREISSLSDILKSKHEEGE-------AYLSEIESIGQAYEDMQTQNQHLLQQIIERDDYNTKLVMEGVQARQLQEALRWEIQTMDKKLHQANLLKDSYDLKVAQMDEQLKVWSDQVGKLAE-----------DGWQSTTAFDNTKKRFLEVQTESYKLR------QSLDGALTKVEKSRLDIADLLIELRKESRFNRKRIEESMEVMTRKAAFLREQTKGSTVLQKLRQEVKEYRGILKCSICHDRQKEVVITKCFHLFCHQCVQKTIDSRQRKCRTCGMSFGPNDVKSIYI 868          
The following BLAST results are available for this feature:
BLAST of NO11G02810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24955.11.700e-16843.45Zinc finger, RING-type, conserved site [Nannochlor... [more]
XP_023747803.14.200e-1323.69E3 ubiquitin-protein ligase BRE1-like 1 [Lactuca s... [more]
PSS24116.11.200e-1226.90E3 ubiquitin-protein ligase BRE1-like [Actinidia c... [more]
XP_009397877.16.100e-1224.75PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1... [more]
XP_018680917.16.100e-1224.75PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1... [more]
XP_020194850.17.900e-1228.47E3 ubiquitin-protein ligase BRE1-like 1 isoform X2... [more]
XP_020194849.17.900e-1228.47E3 ubiquitin-protein ligase BRE1-like 1 isoform X1... [more]
XP_018680918.11.400e-1124.94PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1... [more]
XP_018680915.11.400e-1124.94PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1... [more]
XP_018680919.11.400e-1124.94PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002003NSK002003Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02810.1NO11G02810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529106gene_5182Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100148g5gene5532Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02810.1NO11G02810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02810 ID=NO11G02810|Name=NO11G02810|organism=Nannochloropsis oceanica|type=gene|length=2757bp
ATGTCGGGCTTCGAGAAGATGAAAACTAAGGACCGGGAGCCCTTTAATTT
CTACGTGGTGAAACAGCAGAACCGGGCTTTGAGTGCAGCTGTCAAGCAAA
AGGAGCGACGCATAATTGAACTCGCGCAAACCTTACAAGCCCAAGAACGG
GCCCAGCAAGCCAACACCGCCCTTGTTTCATGTGTAGACCGGCATTGGCG
ACAACTGGAGGGGGACGCACGGATGCTGCTACAAGTCCTAGGTGGTGGCG
ACTGTAGCACGGGAGAGAATGGTAGCGGTAGCAGCGAAGGGGGAAAAGAA
GAAGCAGCAGCGGGGGTCTCGACGGCATTTGAACGCGTGTTGCTCCGCGG
GGCCGACAAGTTCTTGTTGGCAGACGTCACCAAGCTGGCTGAGGCAGCGG
TGGTGGACCATTTGGATGAGGTATTAAAGTATGACGATGAGTCAGGAGAG
GGCTGGGCGATGACTCCTGAAGAGAACGTGGTGGGGGTTGTGGGAGGTCA
GGCCACTGCTACTGCCACTACCACTGCTGCTGCTGCTGCCGCTTCTGAAA
GGGATAAAGCAGCAGTCGCAGCTGTCGATATGGCAGTGCAGCAACGCTGT
CAGCTGACCAGGAGGGTGGTTCAGAAGCTGGCGCAGCGCTTGCAGGAGGT
AGCTGGAGGAGAGGGAGGAAGAGGGGCAGCAGCAGGGCCTACAGCTGGTG
CAAGTAAGGATAATCAGGCCCAAAGTGGCGCAGCGGATGGACAGTCCCCC
CCAGGGAGCGATAGCAGCTGCAGCAGCAGCAGTAGCCCCCTGGTCGAAGG
GACGCAGCGGTTGCAAGCACAGGTGGAGTTGTACCGAGACCGCCTGGCTG
TGGCTAAAAGGAATCAACATAATTTGTACAAGGGCCTGATACGGGCCTTA
AAGGACAGGCATCGCTACAGGAGAGCAGAGGATTGGGGCATGATCGCCCC
TCTAGAGGAAAGGGAGGGGGTCATGAAGATGGAGGAGGAGGAGGAGGGGG
AGGGAAGGGGTGAGGGAGGACGGGAGGGACGAAATGGGCATCATCACCAC
CCACAGCATGGAGAGGGGGAACGTTGCGGTGGTGGTCATGGTGAGCATAA
AACAGGAGGACAACATAAGAGGAAGCGCCCGTTGATGGGACAAGGAGGGG
GAGGCAGGGAAGAGGAAGAGGGAGGGAGTGTGAATGCCGCGGAGCTGACG
GCGACTGTGGAGGCGCTGCAGGAGTTGAGGAGTCTGGTGGAGAAGAGGGG
GGAAGAGTTGGAGAGGGTGAGGGAGGAGAAGGCGGATTTAAACCGACGGT
TGACGGCGTTGTTGGGGGAGCAGCAGCAAGCAGCAGTAAGTAAGGAAGGA
GGTGGTGGAAGAGGAAGCGTGTCGGAGGAGCAGTGGAAAAGTCACCCTCT
GTATCGACAGATGAGGATCGAGCAGGATGGCCTTCGAAGGGAGGCACAGG
AGGGTGAAAGACGCATTGCGGTCTTGCGGCAGGAAGTGGGAGATCTACAA
GGGAAGATGCAGATGCTGGCGCAAAGCCGACAAGAGGCAATAGACGCGGA
ACGACGCCATTTTGTGACTCGGACCGACGACTTGTTACGGGAAAACCAGC
AATTGAAAAGGGTTGTGGACGAGTACTCTTTCGAGGTGGAAGCCAAGCGG
GCACTTGTCCGACAAGCGGATGAGTTGAAGGCAGCCTTGGACGATGAGAG
GACAGAGGCAGGAAGGGTCCGAGAGCTCAGTTCCTACCAAGCCGCGGAAC
TCAAGGAAGTCAGGGCGCAGTGGGCAATGCTGCAAGATAGGCTGGCGGGG
AGGGAGGAGGAGGTCGCGCGGTTGTCGACACAGGTGCTCTCACAGGTGCC
CCCAGAAGAGGGGGAGGGAAGGAGGGAGGGAAGAATTCGGGACTTGGAAA
AGCAGCTGGTGGAGGCCAGGGAGGAGAAGGAGCGGTTGGCAGCGTTTCAG
ATGTCGTTGTTCGAGGAAACGGAAAGCTTGACCGCGGCCCATGAGCACTT
GTCGGGAAGTATGCAGAGGTTGAAGACTCAAGTGGAGGAGAAGGAGAGGA
GGAACAACCGGCTGCAAGACGAGTTGATGCGGACTAAGGCAACGGAGCAG
ATGCAGGTGGAGCGTGTCATGACACTGGAGAGGAAACAGCATGAGTTTGA
GCGGTTACGATTGGAGCAACAAACGCAAATAAAAGAAATGCAGGAGGTTA
TTTATATGCTGAAAACCCAGAGCGCGGCCTTGGCCCAAGCCAAGACGGAA
GCGGAGGAGGAAGTGTCGGTGGAGGCGAGGAAGGCAAACCTGGCCCTGCG
GACCACAGAGGAGGCGACGCTGAAGCTGGAGGGGGCGCAAAACAAAGCGA
ATGCTTTAACACGCCGGGCGGAGGATCTGGGTAAGGAGCTCGATACCGTT
GAAAAGGCACGTTTTTCGTTGCAGGAGCAAGTGAGTGGTCTGACGGGGAG
GCTGCAGAGAGTCCAGACGAAGCTGGAGGCAAGTTCGGAGGGAGCAGGAG
AGGGAAGAGGAGCAGCGGGAGCAGGACCTGTGGTTGGGGCTGTAGGTGGA
GGGAATGCGGCACAGAATGAGACGTTGCTGAAGCTGTTGAATTGCTCCGT
GTGTAACGTGAGGTGGAAGGATTGTGTCATCACCAAATGCTATCACTTGT
TTTGCCAGCAGTGTATCCAGAGCAACCTAAAAGTACGGAGTCGGAAGTGT
CCGGCGTGTGGGAAGCATTTTTCGGAGAATGATGTGAAGCCCATCTTTTT
GACGTGA
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protein sequence of NO11G02810.1

>NO11G02810.1-protein ID=NO11G02810.1-protein|Name=NO11G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=919bp
MSGFEKMKTKDREPFNFYVVKQQNRALSAAVKQKERRIIELAQTLQAQER
AQQANTALVSCVDRHWRQLEGDARMLLQVLGGGDCSTGENGSGSSEGGKE
EAAAGVSTAFERVLLRGADKFLLADVTKLAEAAVVDHLDEVLKYDDESGE
GWAMTPEENVVGVVGGQATATATTTAAAAAASERDKAAVAAVDMAVQQRC
QLTRRVVQKLAQRLQEVAGGEGGRGAAAGPTAGASKDNQAQSGAADGQSP
PGSDSSCSSSSSPLVEGTQRLQAQVELYRDRLAVAKRNQHNLYKGLIRAL
KDRHRYRRAEDWGMIAPLEEREGVMKMEEEEEGEGRGEGGREGRNGHHHH
PQHGEGERCGGGHGEHKTGGQHKRKRPLMGQGGGGREEEEGGSVNAAELT
ATVEALQELRSLVEKRGEELERVREEKADLNRRLTALLGEQQQAAVSKEG
GGGRGSVSEEQWKSHPLYRQMRIEQDGLRREAQEGERRIAVLRQEVGDLQ
GKMQMLAQSRQEAIDAERRHFVTRTDDLLRENQQLKRVVDEYSFEVEAKR
ALVRQADELKAALDDERTEAGRVRELSSYQAAELKEVRAQWAMLQDRLAG
REEEVARLSTQVLSQVPPEEGEGRREGRIRDLEKQLVEAREEKERLAAFQ
MSLFEETESLTAAHEHLSGSMQRLKTQVEEKERRNNRLQDELMRTKATEQ
MQVERVMTLERKQHEFERLRLEQQTQIKEMQEVIYMLKTQSAALAQAKTE
AEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTV
EKARFSLQEQVSGLTGRLQRVQTKLEASSEGAGEGRGAAGAGPVVGAVGG
GNAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKC
PACGKHFSENDVKPIFLT*
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Synonyms
Publications