NO11G02740, NO11G02740 (gene) Nannochloropsis oceanica

Overview
NameNO11G02740
Unique NameNO11G02740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2881
Alignment locationchr11:862871..865751 -

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Properties
Property NameValue
DescriptionRibonuclease h
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:862871..865751 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004523RNA-DNA hybrid ribonuclease activity
GO:0003676nucleic acid binding
GO:0004523RNA-DNA hybrid ribonuclease activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR002156RNaseH_domain
Vocabulary: Biological Process
TermDefinition
GO:0090502RNA phosphodiester bond hydrolysis, endonucleolytic
Homology
BLAST of NO11G02740 vs. NCBI_GenBank
Match: EWM24965.1 (ribonuclease h [Nannochloropsis gaditana])

HSP 1 Score: 371.3 bits (952), Expect = 7.700e-99
Identity = 213/478 (44.56%), Postives = 267/478 (55.86%), Query Frame = 0
Query:  144 YQPESPFQDQPPAYSHLVFPGGDAKAASMAFHHIDSNALHVLRIRLEAREPSSTSPPSPSSRPLLVAEGDITKEGDTIERPTMXXXXXXXXXXXXXXXXPRKEHPKPLKVWCTRAWIGNGPGQREATYGVLAEGLAAAYALGLKNMQVCVPSAQMAREICGVTPLNETSSXXXXXXXXGKAGLQAAHQKIQSSIRHFPSFSVWYDHPVDLAEGEGAGEGGWVEPVPELRGNHEDWDHVLPHLPSITLTPTATVSPYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDPKAEYILRFDGAARGNPGPAGAGAAVFYKTPRGRAGRKVRGVAVWLGSDPPVTNNEAEYQGLIAGLRMAKNLGIRKVCVEGDSLLAIRQMLGEYNVKNERLEVLYREAMALKDGFEDVSFKHVRRAMNPVADALANQALDEEKSGTFGAHGLRID 622
            YQP SPF DQPPAYSHLVFPGGD+KAAS A  H +S   HVLR+RL   +PSS  P S  + PLL AEG+I  E                         P     KP   WCT+ W+G G G+REA YG++A+G+AAA ALGLKN+QV  PSAQ+AREICG+  + E  S        G   L  AH+KIQS ++ FP FSV Y         EG  E   ++PVP LRG+ +  +     +P  TLTP  T S                                                                   I+P A+Y+LRFDG +RGNPGP GAG  ++ +     +  +VRG+++WLGSDPP+TNNEAEY GL+AGLR AK LGIR++CVEGDS L +RQ+LG Y V+NERL VLY EAMALK+ F + S +HV R+ N  ADALAN+ALDE+ +GTF + GLR+D
Sbjct:  143 YQPHSPFLDQPPAYSHLVFPGGDSKAASKAHQHTNSYLSHVLRLRLRTMDPSSLPPTSSLASPLLAAEGEIVIE-----------------------QGPGSNARKPQPAWCTQVWVGLGRGEREAVYGLIAQGVAAAQALGLKNLQVAAPSAQVAREICGIDAVAE--SKGSKGSQGGDCSLLTAHRKIQSMLKFFPFFSVSY-----RIVKEGHEEDMVLQPVPSLRGSQDGDEEEAHPMPPTTLTPFRTPSTTGFGNGAEDSAVNSEEEDDEEGHARSRHDASPDSPVHRASCPPSAPLPARSHVSKVGTGMRSMSPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQA----SLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTFDSGGLRLD 586          
BLAST of NO11G02740 vs. NCBI_GenBank
Match: XP_024519891.1 (uncharacterized protein LOC9630998 isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 174.9 bits (442), Expect = 1.100e-39
Identity = 120/340 (35.29%), Postives = 176/340 (51.76%), Query Frame = 0
Query:  468 KAEYILRFDGAARGNPGPAGAGAAVFYKTPRGRAGRKVRGVAVWLGSDPPVTNNEAEYQGLIAGLRMAKNLGIRKVCVEGDSLLAIRQMLGEYNVKNERLEVLYREAMALKDGFEDVSFKHVRRAMNPVADALANQALD---EEKSGTFGAHGLRIDAPPPVPVAASRRVAGTGAAVGAARGEGIGRRGFSTSATADTPSAHVYNPTAEYLLQFDGGSRGNPGPGGAGVVIYEKVSQARVRSLALWFGDDPPLTNNEAEYRGLIEGLRAAKALGIRRLCVEGDSLLVVKQIMGEYKVRNERLKVLHAEAIELKDSFPEFEIRHVERALNSEADAMANQAL 805
            K  ++L++DGA++GNPG AGAGA +  + P G   +++R   + LG+    TNN AEYQGLI GL+ A    + ++ V+GDS L  +Q+ G + V  + L+ L+ EA +L   F + + +HV R +N  AD LAN+A+D   +E         L+I  P         +   T  +V                                Y+L +DG S+GNPG  GAG ++        +  L +  G     TNN AEY  LI GL+AA    +  + V GDS LV KQ+ GE+ VR+E L+ LHA+   L   F  F I HV+R +N+EADA+AN+ +
Sbjct:   61 KLVHLLQYDGASKGNPGKAGAGALL--RDPDGSVLQELR---IGLGT---ATNNFAEYQGLILGLKGALAQNVTRIRVQGDSNLVCKQVAGIWKVNKDTLKPLHAEAQSLSKKFTEFTIEHVVRELNSAADDLANKAIDLKPQEVVKDVKCIKLQISEPSHQITTKKNKKEVTEESV--------------------------------YVLAYDGASKGNPGKAGAGALLRNPKGSV-IEKLYMGLG---TATNNVAEYEALILGLQAALDRNVTSIQVFGDSNLVCKQVAGEWAVRHEGLRALHAQVQALSMQFTTFSIHHVDREMNTEADALANKGI 356          
BLAST of NO11G02740 vs. NCBI_GenBank
Match: XP_024519889.1 (uncharacterized protein LOC9630998 isoform X1 [Selaginella moellendorffii] >XP_024519890.1 uncharacterized protein LOC9630998 isoform X1 [Selaginella moellendorffii] >XP_002990328.2 uncharacterized protein LOC9630998 isoform X1 [Selaginella moellendorffii])

HSP 1 Score: 174.9 bits (442), Expect = 1.100e-39
Identity = 120/340 (35.29%), Postives = 176/340 (51.76%), Query Frame = 0
Query:  468 KAEYILRFDGAARGNPGPAGAGAAVFYKTPRGRAGRKVRGVAVWLGSDPPVTNNEAEYQGLIAGLRMAKNLGIRKVCVEGDSLLAIRQMLGEYNVKNERLEVLYREAMALKDGFEDVSFKHVRRAMNPVADALANQALD---EEKSGTFGAHGLRIDAPPPVPVAASRRVAGTGAAVGAARGEGIGRRGFSTSATADTPSAHVYNPTAEYLLQFDGGSRGNPGPGGAGVVIYEKVSQARVRSLALWFGDDPPLTNNEAEYRGLIEGLRAAKALGIRRLCVEGDSLLVVKQIMGEYKVRNERLKVLHAEAIELKDSFPEFEIRHVERALNSEADAMANQAL 805
            K  ++L++DGA++GNPG AGAGA +  + P G   +++R   + LG+    TNN AEYQGLI GL+ A    + ++ V+GDS L  +Q+ G + V  + L+ L+ EA +L   F + + +HV R +N  AD LAN+A+D   +E         L+I  P         +   T  +V                                Y+L +DG S+GNPG  GAG ++        +  L +  G     TNN AEY  LI GL+AA    +  + V GDS LV KQ+ GE+ VR+E L+ LHA+   L   F  F I HV+R +N+EADA+AN+ +
Sbjct:   79 KLVHLLQYDGASKGNPGKAGAGALL--RDPDGSVLQELR---IGLGT---ATNNFAEYQGLILGLKGALAQNVTRIRVQGDSNLVCKQVAGIWKVNKDTLKPLHAEAQSLSKKFTEFTIEHVVRELNSAADDLANKAIDLKPQEVVKDVKCIKLQISEPSHQITTKKNKKEVTEESV--------------------------------YVLAYDGASKGNPGKAGAGALLRNPKGSV-IEKLYMGLG---TATNNVAEYEALILGLQAALDRNVTSIQVFGDSNLVCKQVAGEWAVRHEGLRALHAQVQALSMQFTTFSIHHVDREMNTEADALANKGI 374          
BLAST of NO11G02740 vs. NCBI_GenBank
Match: XP_024523607.1 (uncharacterized protein LOC9648412 isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 174.9 bits (442), Expect = 1.100e-39
Identity = 120/340 (35.29%), Postives = 176/340 (51.76%), Query Frame = 0
Query:  468 KAEYILRFDGAARGNPGPAGAGAAVFYKTPRGRAGRKVRGVAVWLGSDPPVTNNEAEYQGLIAGLRMAKNLGIRKVCVEGDSLLAIRQMLGEYNVKNERLEVLYREAMALKDGFEDVSFKHVRRAMNPVADALANQALD---EEKSGTFGAHGLRIDAPPPVPVAASRRVAGTGAAVGAARGEGIGRRGFSTSATADTPSAHVYNPTAEYLLQFDGGSRGNPGPGGAGVVIYEKVSQARVRSLALWFGDDPPLTNNEAEYRGLIEGLRAAKALGIRRLCVEGDSLLVVKQIMGEYKVRNERLKVLHAEAIELKDSFPEFEIRHVERALNSEADAMANQAL 805
            K  ++L++DGA++GNPG AGAGA +  + P G   +++R   + LG+    TNN AEYQGLI GL+ A    + ++ V+GDS L  +Q+ G + V  + L+ L+ EA +L   F + + +HV R +N  AD LAN+A+D   +E         L+I  P         +   T  +V                                Y+L +DG S+GNPG  GAG ++        +  L +  G     TNN AEY  LI GL+AA    +  + V GDS LV KQ+ GE+ VR+E L+ LHA+   L   F  F I HV+R +N+EADA+AN+ +
Sbjct:   61 KLVHLLQYDGASKGNPGKAGAGALL--RDPDGSVLQELR---IGLGT---ATNNFAEYQGLILGLKGALAQNVTRIRVQGDSNLVCKQVAGIWKVNKDTLKPLHAEAQSLSKKFTEFTIEHVVRELNSAADDLANKAIDLKPQEVVKDVKCIKLQISEPSHQITTKKNKKEVTEESV--------------------------------YVLAYDGASKGNPGKAGAGALLRNPKGSV-IEKLYMGLG---TATNNVAEYEALILGLQAALDRNVTSIQVFGDSNLVCKQVAGEWAVRHEGLRALHAQVQALSMQFTTFSIHHVDREMNTEADALANKGI 356          
BLAST of NO11G02740 vs. NCBI_GenBank
Match: XP_024523603.1 (uncharacterized protein LOC9648412 isoform X1 [Selaginella moellendorffii] >XP_024523605.1 uncharacterized protein LOC9648412 isoform X1 [Selaginella moellendorffii] >XP_002994296.2 uncharacterized protein LOC9648412 isoform X1 [Selaginella moellendorffii] >XP_024523606.1 uncharacterized protein LOC9648412 isoform X1 [Selaginella moellendorffii])

HSP 1 Score: 174.9 bits (442), Expect = 1.100e-39
Identity = 120/340 (35.29%), Postives = 176/340 (51.76%), Query Frame = 0
Query:  468 KAEYILRFDGAARGNPGPAGAGAAVFYKTPRGRAGRKVRGVAVWLGSDPPVTNNEAEYQGLIAGLRMAKNLGIRKVCVEGDSLLAIRQMLGEYNVKNERLEVLYREAMALKDGFEDVSFKHVRRAMNPVADALANQALD---EEKSGTFGAHGLRIDAPPPVPVAASRRVAGTGAAVGAARGEGIGRRGFSTSATADTPSAHVYNPTAEYLLQFDGGSRGNPGPGGAGVVIYEKVSQARVRSLALWFGDDPPLTNNEAEYRGLIEGLRAAKALGIRRLCVEGDSLLVVKQIMGEYKVRNERLKVLHAEAIELKDSFPEFEIRHVERALNSEADAMANQAL 805
            K  ++L++DGA++GNPG AGAGA +  + P G   +++R   + LG+    TNN AEYQGLI GL+ A    + ++ V+GDS L  +Q+ G + V  + L+ L+ EA +L   F + + +HV R +N  AD LAN+A+D   +E         L+I  P         +   T  +V                                Y+L +DG S+GNPG  GAG ++        +  L +  G     TNN AEY  LI GL+AA    +  + V GDS LV KQ+ GE+ VR+E L+ LHA+   L   F  F I HV+R +N+EADA+AN+ +
Sbjct:   61 KLVHLLQYDGASKGNPGKAGAGALL--RDPDGSVLQELR---IGLGT---ATNNFAEYQGLILGLKGALAQNVTRIRVQGDSNLVCKQVAGIWKVNKDTLKPLHAEAQSLSKKFTEFTIEHVVRELNSAADDLANKAIDLKPQEVVKDVKCIKLQISEPSHQITTKKNKKEVTEESV--------------------------------YVLAYDGASKGNPGKAGAGALLRNPKGSV-IEKLYMGLG---TATNNVAEYEALILGLQAALDRNVTSIQVFGDSNLVCKQVAGEWAVRHEGLRALHAQVQALSMQFTTFSIHHVDREMNTEADALANKGI 356          
BLAST of NO11G02740 vs. NCBI_GenBank
Match: GAX15225.1 (hypothetical protein FisN_12Lh072 [Fistulifera solaris])

HSP 1 Score: 133.7 bits (335), Expect = 2.700e-27
Identity = 114/371 (30.73%), Postives = 176/371 (47.44%), Query Frame = 0
Query:  465 IDPKAEYILRFDGAARGNPGPAGAGAAVFYKTPRGRAGRKVRGVAVWLGSDPPVTNNEAEYQGLIAGLRMAKNLGIRKVCVEGDSLLAIRQMLGEYNVKNERLEVLYREAMALKDGFEDVSFKHVRRAMN-PVADALANQALDEEKSGTFGAHG------------LRIDAPPPV--PVAASRRVAGTGAAVG---AARGEGIGRRG--FSTSATADTPSAHVYNPTAEYLLQFDGGSRGNP-GPGGAGVVIYEKVSQARVRSLALWFGDD--PPLTNNEAEYRGLIEGLRAAKALGIRRLCVEGDSLLVVKQIMGEYKVRNERLKVLHAEAIELKDSFPEFEIRHVERALNSEADAMANQALDEQRSGTF 813
            ++P+  YIL+  G ++ N    G G  +       +          +  SD  +  + AEY  LI GL  A  LG++ + +E D  +  +Q+ G + ++   ++ LY + M L +  E +    VR   N   A  LA +AL   KS      G             R  + PPV  P+ AS++ A +    G   A   E         S      T +  + +P   YLLQFDGG+RGNP G  G G+V+++       +   +W G    PP++NN AEY  ++ GL  AK+LGI+R+  +GDS LVVKQ+ G Y+VR+ +LK L     ++   F +  + H+ R  N  AD +AN A+D + S  F
Sbjct:   55 LNPQHTYILQTKGYSKLNADGTGIGIVL-------KDSSSTLTARHYFPSDRAL--SLAEYSALIVGLHYAIQLGVQHLMLETDHAVLAKQLQGIFPMEKRIMKPLYWQVMHLVE--ERLQTFRVRIVPNVEEATELAKRALATNKSSLSQPQGDPMGHAFTGQGKQRKPSVPPVLIPMTASQQQASSDENKGVWPAIPNESSSNDNPTISNENQDTTSTTTIIDPQRTYLLQFDGGARGNPAGKSGCGMVLFDD------QGHEVWCGWKFLPPMSNNMAEYHSILLGLLCAKSLGIQRIQAQGDSELVVKQLNGVYQVRDPKLKELWGPTRDVMQEFQDISVTHIAREYNKRADWLANHAMDTETSFGF 408          
BLAST of NO11G02740 vs. NCBI_GenBank
Match: PSC67966.1 (bifunctional RNase H acid phosphatase [Micractinium conductrix])

HSP 1 Score: 132.9 bits (333), Expect = 4.600e-27
Identity = 69/137 (50.36%), Postives = 92/137 (67.15%), Query Frame = 0
Query:  674 YLLQFDGGSRGNPGPGGAGVVIYEKVSQARVRSLALWFGDDPPLTNNEAEYRGLIEGLRAAKALGIRRLCVEGDSLLVVKQIMGEYKVRNERLKVLHAEAIELKDSFPEFEIRHVERALNSEADAMANQALDEQRSG 811
            + L+FDG S+ NPGP G G VIYE+     V  L  + GD    TNN+AEY GLI GL AA  LG R++ V+GDS L+V+Q++G ++V+NE L+  HA A+ L   F  FE + V RA N+ ADA++NQA+DE RSG
Sbjct:  165 FRLEFDGASKQNPGPAGFGAVIYEEAEGEEVHRLCQYMGD--LCTNNQAEYAGLIAGLAAALELGCRQVKVQGDSTLIVQQVLGNWQVKNEGLRPYHAAAVALARRFAGFEAKQVPRAQNAVADALSNQAIDEFRSG 299          
BLAST of NO11G02740 vs. NCBI_GenBank
Match: PRW20551.1 (ribonuclease H [Chlorella sorokiniana])

HSP 1 Score: 129.4 bits (324), Expect = 5.100e-26
Identity = 66/137 (48.18%), Postives = 89/137 (64.96%), Query Frame = 0
Query:  674 YLLQFDGGSRGNPGPGGAGVVIYEKVSQARVRSLALWFGDDPPLTNNEAEYRGLIEGLRAAKALGIRRLCVEGDSLLVVKQIMGEYKVRNERLKVLHAEAIELKDSFPEFEIRHVERALNSEADAMANQALDEQRSG 811
            + L+FDGGS+GNPGP G G V+Y+  S   V  L  + GD    TNN+AEY GLI GL AA  LG  RL V+GDS+LV+ Q++G ++V+ + L+  H  A +L   F  FE + V R  N  ADA++NQA+D+ RSG
Sbjct:  138 FRLEFDGGSKGNPGPAGFGAVLYDDASGVEVARLCQYIGDHN--TNNQAEYAGLIAGLAAALELGCSRLKVQGDSMLVINQVLGRWQVKTDGLRPYHRLAQQLARRFDHFEAKQVLREFNQAADALSNQAVDDYRSG 272          
BLAST of NO11G02740 vs. NCBI_GenBank
Match: CBJ28520.1 (ribonuclease HI [Ectocarpus siliculosus])

HSP 1 Score: 125.9 bits (315), Expect = 5.600e-25
Identity = 86/236 (36.44%), Postives = 121/236 (51.27%), Query Frame = 0
Query:  597 ADALANQALDEEKSGTFGAHGLRIDAPPPVPVAASRRVAGTGAAVGAARGEGIGRRGFSTSATADTPSAHVYNPTAEYLLQFDGGSRGNPGPGGAGVVIY---EKVSQARVRSLALWFGDDPPLTNNEAEYRGLIEGLRAAKALGIRRLCVEGDSLLVVKQIMGEYK------------------VRNERLKVLHAEAIELKDSFPEFEIRHVERALNSEADAMANQALDEQRSGT 812
            A A+ +++   E+S T           PP P  +    +           +   +RG STS+T           +  +LLQFDGGSRGNPGP G G V+Y   E   +  V S ++W G+    TNNEAEYRGLIEGL AA+ LGI+RL VEGDS LV++Q++G YK                  V + +++ L  EA  +  +F   E+ H+ RA N  AD +AN A+D + S +
Sbjct:  112 AQAVIDRSRQRERSNTTEPPRAAGTTAPPGPARSQVATSQAARTPSPRIRQQQQQRGISTSSTKPGRQR-----STTHLLQFDGGSRGNPGPSGCGAVLYRLDESGEREEVWSSSVWIGE--KRTNNEAEYRGLIEGLIAAEKLGIKRLSVEGDSKLVIQQMLGNYKGKQGKTERGGVGGGRGGGVTSPKMQPLFREATTISKAFDALELGHIMRAHNERADDLANIAMDTETSSS 340          
BLAST of NO11G02740 vs. NCBI_GenBank
Match: XP_022841041.1 (Ribonuclease H1, N-terminal [Ostreococcus tauri] >CEG01575.1 Ribonuclease H1, N-terminal [Ostreococcus tauri])

HSP 1 Score: 124.8 bits (312), Expect = 1.300e-24
Identity = 80/179 (44.69%), Postives = 105/179 (58.66%), Query Frame = 0
Query:  627 PVAASRRVAGTGAAVGAARGEGIGRRGFSTSATADTPSAHVYNPTAEYLLQFDGGSRGNPGPGGAGVVIYEKVSQARVRSLALWFGDDPPLTNNEAEYRGLIEGLRAAKALGIRRLCVEGDSLLVVKQIMGEYKVRNERLKVLHAEAIELKDSFPEFEIRHVERALNSEADAMANQALD 806
            PV ASR  A    A  +ARG+  G       A+A   SA V +   EY+L+FDG SRGNPG  GAG ++  K     V  L  + G +   T NEAEY  L  GLR A  LGI ++ V GDS L+V Q+ G +K+++E L+ +HAEA+ LK  F EF+I HV+R  N  AD +AN A+D
Sbjct:  107 PVKASR--ARARGASTSARGDLAGEE----LASARAGSAEV-SSADEYVLEFDGASRGNPGEAGAGALLRRKRDDRVVEELLEYLGSE--RTVNEAEYAALCLGLRKAIELGITKIEVRGDSKLIVNQVDGSFKLKSENLRSMHAEAVSLKKKFAEFKISHVKREFNKHADHLANMAVD 276          
The following BLAST results are available for this feature:
BLAST of NO11G02740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24965.17.700e-9944.56ribonuclease h [Nannochloropsis gaditana][more]
XP_024519891.11.100e-3935.29uncharacterized protein LOC9630998 isoform X2 [Sel... [more]
XP_024519889.11.100e-3935.29uncharacterized protein LOC9630998 isoform X1 [Sel... [more]
XP_024523607.11.100e-3935.29uncharacterized protein LOC9648412 isoform X2 [Sel... [more]
XP_024523603.11.100e-3935.29uncharacterized protein LOC9648412 isoform X1 [Sel... [more]
GAX15225.12.700e-2730.73hypothetical protein FisN_12Lh072 [Fistulifera sol... [more]
PSC67966.14.600e-2750.36bifunctional RNase H acid phosphatase [Micractiniu... [more]
PRW20551.15.100e-2648.18ribonuclease H [Chlorella sorokiniana][more]
CBJ28520.15.600e-2536.44ribonuclease HI [Ectocarpus siliculosus][more]
XP_022841041.11.300e-2444.69Ribonuclease H1, N-terminal [Ostreococcus tauri] >... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001995NSK001995Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02740.1NO11G02740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591624gene_5173Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100148g13gene5539Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02740.1NO11G02740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02740 ID=NO11G02740|Name=NO11G02740|organism=Nannochloropsis oceanica|type=gene|length=2881bp
CGTAACATTTCGGGATCAAAGATGGAATGACCCCTTCGACGTCGAGCTGT
AGGAAGCTAAGGGTGTGCTGACCGTGGCGTAGGTTGTCCGTGATCTTGGT
GGCAAGCGAAGCTCCTCTTGTCATCACACCACTTCTTCCTTCAACAACCC
TCGCCCTTTTCCCCTTCTCCCTCGATACCCTTGCAGCTACCAAACACTCA
CATCCACATTTGTCCGCACACCTACATACAGGTATTGCACGGTTATCTGA
TAGCTAGATGTCTGGTTGATACTAGGTGTCTTTTCTCCTGCGTTCGCCTT
TCCATGACAAGCAAGACGGCCACGGCGGCGTCTTTCCCCTCCTCGTTGTC
AAGTCTACCCGGTGCCTCGCACCTACGGGCTCGATTAAGACCAAAACGTC
CACTTTGTCGACGTGGCATAATTATGGCGACCCTACTAACGCTAAGTGAT
GTGCTGGTGCGTGCCAGGGCAGGTGCTGTGGCAACGGTGACAGCTCCATT
CGCACACATGGCCCGCGCCCGGCGACGAACGGCTTGGACTCCTCTCTTCC
TTGCCCCCTCAACGCAGCTGCCAATGCAACATCACGCTCCCACGCCTTTT
TTGAACGCACCTAAATCAATTGTGCGACACAGCGCCACCTCTTTGGCCGC
GACCGCGAAGAAAGCCATCAGCAATGCCGCTGCCCCCGCTGCCACCCCAT
TACCCCCTCCATCCACCAGCACCCGCAGTTTTTACCAACCCGAAAGTCCC
TTCCAAGACCAACCCCCCGCTTACTCCCACCTTGTCTTCCCAGGCGGCGA
CGCCAAGGCAGCCAGTATGGCATTTCACCATATTGACAGCAATGCCTTGC
ATGTCCTGCGCATCCGGCTCGAGGCCCGCGAACCCTCCTCCACCTCCCCT
CCCTCCCCTTCCAGCCGACCTCTCCTGGTCGCGGAAGGTGATATTACCAA
GGAAGGTGATACAATAGAAAGGCCTACTATGACTACGACTACAACCACTA
CTACTGCTGCTGCTGCTGCTGCACATGCCCCCCGCAAGGAACATCCGAAA
CCTCTCAAGGTATGGTGCACTCGCGCGTGGATTGGGAATGGCCCTGGCCA
GCGCGAAGCAACCTATGGAGTGCTTGCCGAAGGTCTCGCAGCTGCCTATG
CCCTCGGATTGAAAAATATGCAAGTCTGCGTCCCCTCGGCACAGATGGCC
CGGGAGATATGTGGAGTGACTCCGCTGAATGAGACCAGCAGCAGCAGCAG
CAGCAGCAAGAGCCGTGGCAAGGCAGGCTTGCAAGCGGCCCATCAGAAGA
TCCAATCGTCTATCCGTCATTTCCCCTCCTTTTCCGTGTGGTACGATCAT
CCGGTGGATCTGGCGGAGGGCGAGGGCGCGGGGGAAGGGGGGTGGGTCGA
ACCTGTTCCTGAATTGAGGGGCAATCACGAGGACTGGGACCACGTGCTCC
CGCATCTTCCCTCTATTACGTTGACACCCACTGCTACAGTCTCCCCCTAC
CCCCCTTCTGGCTCTTCCTCCTTCTCTTCCTCCTTCTCCGCCTCCTCCTC
CTCCTTTTCGAACAAACAGGATTCCCTTGCGCCCCCACCGGAAGCATCTC
CTATATCCGACGCTCGACCAGCAGCAGCAGCAGTAGAGGCAGCAGTAGCA
GCAGTAGCAGATACAGCAGCAGCAGCAGCAGCAGCCACTCCCCCGATCGA
TCCAAAAGCTGAGTATATTCTACGCTTCGACGGTGCCGCTCGTGGCAACC
CCGGACCTGCTGGAGCCGGTGCTGCTGTTTTTTACAAGACACCAAGGGGG
AGGGCGGGAAGGAAGGTGAGGGGGGTGGCGGTGTGGTTGGGGAGTGATCC
TCCGGTGACGAATAATGAGGCGGAATACCAGGGTCTGATCGCCGGGTTAA
GGATGGCGAAAAACTTGGGGATTAGAAAGGTGTGTGTGGAGGGAGATTCA
TTGCTGGCTATTCGGCAGATGCTCGGGGAATACAACGTGAAGAATGAGAG
GCTTGAGGTCTTGTATAGAGAGGCGATGGCGTTGAAGGATGGCTTTGAGG
ATGTGAGTTTTAAGCATGTGAGGAGGGCGATGAACCCTGTGGCGGATGCC
CTGGCAAATCAAGCGTTAGATGAGGAGAAAAGTGGGACATTTGGCGCGCA
TGGACTGAGAATTGACGCACCACCACCTGTACCAGTGGCTGCCTCACGAA
GGGTAGCAGGAACAGGAGCAGCAGTTGGCGCAGCTCGAGGAGAAGGAATA
GGACGTCGAGGTTTCTCGACGAGCGCGACAGCGGACACACCCTCCGCCCA
TGTATATAATCCTACTGCTGAGTACTTGCTACAATTCGATGGTGGCTCAC
GAGGGAACCCCGGCCCAGGCGGTGCTGGTGTGGTGATATATGAGAAGGTC
TCTCAAGCGCGGGTAAGGAGTTTGGCGTTGTGGTTTGGTGATGACCCGCC
CTTGACTAATAATGAGGCAGAGTACCGAGGATTGATTGAAGGGTTACGGG
CGGCGAAAGCTTTGGGTATCCGTCGCTTGTGCGTGGAAGGGGATTCGCTG
TTGGTGGTGAAGCAAATTATGGGGGAGTACAAGGTGAGAAACGAGAGGCT
GAAGGTATTGCATGCTGAGGCGATTGAGTTAAAGGACAGTTTCCCGGAGT
TTGAGATTAGGCACGTGGAGCGGGCCTTAAACTCAGAGGCGGATGCGATG
GCGAATCAGGCTTTGGATGAGCAGAGGAGTGGGACGTTTGGGCCGCTCGG
ACAGCGTCTTGAGGAGAGAAGTAGAGGGTAGGGAAGGAGGGAGGGGATGG
GGGGTAGTTCTAACGAGGCAGGGTAGCTAGGACACAAAGAAAATAAACTA
GACTCGTGTATTATTGTCATCTGACTTTGCT
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protein sequence of NO11G02740.1

>NO11G02740.1-protein ID=NO11G02740.1-protein|Name=NO11G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=826bp
MTSKTATAASFPSSLSSLPGASHLRARLRPKRPLCRRGIIMATLLTLSDV
LVRARAGAVATVTAPFAHMARARRRTAWTPLFLAPSTQLPMQHHAPTPFL
NAPKSIVRHSATSLAATAKKAISNAAAPAATPLPPPSTSTRSFYQPESPF
QDQPPAYSHLVFPGGDAKAASMAFHHIDSNALHVLRIRLEAREPSSTSPP
SPSSRPLLVAEGDITKEGDTIERPTMTTTTTTTTAAAAAAHAPRKEHPKP
LKVWCTRAWIGNGPGQREATYGVLAEGLAAAYALGLKNMQVCVPSAQMAR
EICGVTPLNETSSSSSSSKSRGKAGLQAAHQKIQSSIRHFPSFSVWYDHP
VDLAEGEGAGEGGWVEPVPELRGNHEDWDHVLPHLPSITLTPTATVSPYP
PSGSSSFSSSFSASSSSFSNKQDSLAPPPEASPISDARPAAAAVEAAVAA
VADTAAAAAAATPPIDPKAEYILRFDGAARGNPGPAGAGAAVFYKTPRGR
AGRKVRGVAVWLGSDPPVTNNEAEYQGLIAGLRMAKNLGIRKVCVEGDSL
LAIRQMLGEYNVKNERLEVLYREAMALKDGFEDVSFKHVRRAMNPVADAL
ANQALDEEKSGTFGAHGLRIDAPPPVPVAASRRVAGTGAAVGAARGEGIG
RRGFSTSATADTPSAHVYNPTAEYLLQFDGGSRGNPGPGGAGVVIYEKVS
QARVRSLALWFGDDPPLTNNEAEYRGLIEGLRAAKALGIRRLCVEGDSLL
VVKQIMGEYKVRNERLKVLHAEAIELKDSFPEFEIRHVERALNSEADAMA
NQALDEQRSGTFGPLGQRLEERSRG*
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Synonyms
Publications