NO11G02670, NO11G02670 (gene) Nannochloropsis oceanica

Overview
NameNO11G02670
Unique NameNO11G02670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2632
Alignment locationchr11:828315..830946 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:828315..830946 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G02670 vs. NCBI_GenBank
Match: EWM24933.1 (hypothetical protein Naga_100086g21 [Nannochloropsis gaditana])

HSP 1 Score: 282.3 bits (721), Expect = 1.700e-72
Identity = 177/326 (54.29%), Postives = 209/326 (64.11%), Query Frame = 0 
Query:    1 MSRSYRLVGALLPRLPLARLLLLFFLVHPGSCATFESRHYLTQRYPNRDVIPPASLLPSPGQRRRHDTNPGSLLFVRPPTVTDPQQSHSHKHNKKGQTMPSSPVARRVVIGNFVSELESSNYDYRRNAGPRPRLPGQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAMPSAS------VGRLLKKSAASFVDAYDGVMSFVGSRIVTTETSFSKALLAVSSSMATPLTYLEGQKMSSLSSSSSRG----------LRLTSRGAEGR----MSASSVGGNLAKEMLSSSFSSPALVGFMDVDPFEKSKKHFKRNTSLAKLLL 307
            M+RS+R+V  L PR+PLARLL LFFLVHPGS ATFESRHYLTQRYPNRDVIPP SLL S  +RRR+DT    L F+RPP    P +S       K Q + SS VA +V+IG+FVSELE+ N++ RR  GPRPR P Q+                                S    AS      VG+L +KSAA+ VDAYDGV+SFVGSRIVTTE SF+KALLAVSSS+ATPL+ +EG+     S  S  G          +  +S  A GR    +S + +GG  + E LS+SFSSPALVGFMDVDPFEKSKKHFKRNTSLAKLLL
Sbjct:    1 MTRSHRVVKGLFPRVPLARLLALFFLVHPGSSATFESRHYLTQRYPNRDVIPPRSLLTSQ-RRRRYDTTTSPLSFIRPPVQAIPARS------DKDQAILSSAVALKVIIGSFVSELETCNHERRRIGGPRPRSPDQRSSHAHPQQLQSNSQGRGHHKQRLVSSLPSSLASVQGGASVSSPSPVGKLFQKSAATLVDAYDGVLSFVGSRIVTTEASFNKALLAVSSSLATPLSQVEGRTAGFTSLMSRNGDAHMGMRPSSIEASSEAARGRHDNYLSVAGMGG--SGEALSTSFSSPALVGFMDVDPFEKSKKHFKRNTSLAKLLL 317
The following BLAST results are available for this feature:
BLAST of NO11G02670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24933.11.700e-7254.29hypothetical protein Naga_100086g21 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001989NSK001989Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02670.1NO11G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100086g21gene5548Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02670.1NO11G02670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02670 ID=NO11G02670|Name=NO11G02670|organism=Nannochloropsis oceanica|type=gene|length=2632bp
GAAAAGCAAGGAATTGTTCAGCGGCGTCAAAAGACATCGAGACACGAATG
TTTGGAGTTATTACATATACAAGTGTGAAGCTCTTGATTCATTTGTTTGT
GAAGCCTTCATTTTCTGGTGGGCTCGCCTGACACAGCCTCCTCGCGCACG
CATACGTCGTTCGAGCACGCTCAGGAGTGAAACTTACTCTGGCTTGAAGT
GTGCGAGTCGGTCTTTGCACGTCCACGTCCCCAAACAAGAGCCTGCATCC
TCTTGACCACCTCTTTTACGCCCCTATCTTCACTCACACCCTTTCCCCTA
CATTCACACGACCACAGACACAGACACTGCCATCAGCCTTCAAGCAATCA
CACCAACGCGCAACTCCCTCGCACTTCTTCCCGGGACCATGTCACGCTCC
TACCGGCTCGTGGGAGCCCTTCTTCCCCGTCTTCCCCTAGCCCGTCTCCT
CCTCCTCTTCTTTCTGGTGCACCCAGGATCCTGCGCCACCTTTGAGAGCC
GTCACTATTTAACACAACGTTACCCCAATCGGGACGTGATTCCTCCCGCC
AGCCTCCTCCCCTCCCCCGGCCAACGGCGCCGCCATGACACCAATCCTGG
CTCGCTCCTTTTTGTCCGTCCACCCACTGTGACAGACCCACAACAAAGCC
ACAGCCACAAGCACAACAAAAAGGGACAGACCATGCCGTCCTCTCCAGTG
GCTCGCCGCGTCGTGATTGGCAATTTCGTCTCTGAGCTGGAGAGCAGCAA
TTACGACTATCGACGGAACGCGGGGCCTCGTCCTCGCCTTCCCGGCCAGC
AAGTGCAACAACAACATCATGCACATGATCAGCAACGGCAGCAACAGCAA
GTTGTCTCCAAACTTTCTTCCTCCCTCACCTCCGTCTCAGGCGGTGCTTC
CGCAATGCCCTCGGCGTCGGTGGGCAGGCTCCTTAAAAAGTCCGCCGCTT
CCTTCGTTGATGCCTATGACGGCGTCATGAGCTTTGTGGGAAGCCGAATT
GTGACAACCGAGACAAGCTTCAGCAAGGCCCTGCTTGCAGTCTCCTCCTC
CATGGCCACCCCCCTCACATACCTAGAAGGACAGAAGATGTCCTCCTTGT
CCTCCTCTTCCTCGAGAGGCTTGAGATTGACATCTCGAGGAGCGGAAGGA
CGTATGTCTGCTTCCTCAGTCGGTGGGAACTTGGCAAAGGAGATGCTTAG
TTCCTCCTTTTCTTCTCCGGCCCTGGTGGGGTTCATGGATGTGGACCCAT
TCGAGAAGAGCAAGAAGCATTTCAAGCGCAACACCTCGCTGGCCAAGCTC
CTTTTGTAAAGGAGGAAGCGAAAAAGATTTGAAGGTAGCCTGACTTTCTA
GACCATCATCCTCCTCCTGTTCTCTCCCACTCTTCTCTCTTCCTCAACAA
GAGCATCTGCACCTAAAAGATGACTTGAGAAGACATGATGATGGCTCGTT
CCTGTATATTGATAGATAGAAAACCTCTGTTGTTGACCGTGTGATAACTG
AGCATTGTAGGCACTCTTTTACCTTTTTGCCCACGTGTTCTGCGATGCTA
GTCACTACTATGTATTTGATTTAAACGTGTGCGTTGCAGCAAGGGCCACC
CACACTGAAATATTAGCACTACCACCATCATGTGCCGGGAGAGACACAAG
CACAGACGCACATGCACATCCATACACACACACGGAACAAGAGATCGAAA
GAGAGAAAAAAAGAACACTGATGCATCGTGCCACCTCACGCATGGGGAAT
GGGGGAGACTGCGTTGCTTGGGTCATCCATTATTCAGTCACGCTGGATTG
ATTGGTCCATTGTATCGTTTAGGAATAGTAGCAGTAGTAGTATTAGTAGT
AATAGGAGTTCGGCTTGCTTCCGACTGAGATATATGATTGAAACTGAAAT
GATTAAATTATTATTATTCCCATCACCCCATAGTGGGTCGCTTTCGAGAG
AGTGAAAAAAGATATGACCAGACAGACGCACCGACGGAACGAAAATCTGT
CGTCAAGAGATCGTGAAGTTTCGCGCAGCGTGAGAGAGACACGACCTTTG
AGAAATGACACGAAGAAAAGTGGCAAACTTGTACGACATGAAGAACAAAA
TGGAAGGCGAAAAATATATAATATTGAAAAAAACAAAAAAAGAGGAGCAA
GTGAGGTGGAGAGGAAGAGGAAGAGAGCAAGAGAGAGAGAAAACAAAGCA
AGCCAGGAGAAGGTATTATCATTCATTAAATTGATCTCTGATGGGTTTCT
AGCTTACACTTTCATGACTGAAATATTAATATAGGCAAGGGAAAGGGTTG
TAGATGTCCAATCAACAAGGAGGAACTGGGGAACATTGACGACACAGGCT
GGAGAAAATGACGTAAAGCGGAACCCCTACCTGCCTGTTGCCCCGTCTGC
GTGCGCATGGTCGAAAAAAAAAGAAAAGTGAGATAGGCAAAAAGTGAGGC
GAGGGGCTGACGGAAGAGGGCAGGAATTAGTAAATTTCTTGAGATGTGCG
ACATGTGTGCTTGCTATCATGTCCCGTGTGTGGGCTAGAGGCAGCCAGAA
ATCGAATATTTGGCGGATTGATATGTAAGTCGGGTCGAAACGTGCTAGAA
CAACAAAGAACTACAACACACCTTTAGAGAAG
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protein sequence of NO11G02670.1

>NO11G02670.1-protein ID=NO11G02670.1-protein|Name=NO11G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MSRSYRLVGALLPRLPLARLLLLFFLVHPGSCATFESRHYLTQRYPNRDV
IPPASLLPSPGQRRRHDTNPGSLLFVRPPTVTDPQQSHSHKHNKKGQTMP
SSPVARRVVIGNFVSELESSNYDYRRNAGPRPRLPGQQVQQQHHAHDQQR
QQQQVVSKLSSSLTSVSGGASAMPSASVGRLLKKSAASFVDAYDGVMSFV
GSRIVTTETSFSKALLAVSSSMATPLTYLEGQKMSSLSSSSSRGLRLTSR
GAEGRMSASSVGGNLAKEMLSSSFSSPALVGFMDVDPFEKSKKHFKRNTS
LAKLLL*
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Synonyms
Publications