NO11G02430, NO11G02430 (gene) Nannochloropsis oceanica

Overview
NameNO11G02430
Unique NameNO11G02430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1973
Alignment locationchr11:770837..772809 -

Link to JBrowse

Properties
Property NameValue
DescriptionTrna-lysidine synthetase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:770837..772809 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0016879ligase activity, forming carbon-nitrogen bonds
GO:0016879ligase activity, forming carbon-nitrogen bonds
GO:0005524ATP binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0008033tRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR012094tRNA_Ile_lys_synt
IPR011063tRNA-lysidine/thiocyt_synth
IPR012796Lysidine-tRNA-synth_C
Homology
BLAST of NO11G02430 vs. NCBI_GenBank
Match: XP_002288790.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94226.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 178.3 bits (451), Expect = 7.000e-41
Identity = 138/449 (30.73%), Postives = 216/449 (48.11%), Query Frame = 0
Query:  139 PPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTA----------IQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRA-----------------------GIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIK--DEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEEWDLILPHVPTGARLLLRHRQDGD---RFHPAWRSG--SIKLKDFLRGQNVPLHRR 548
            PPL L +A      R E++  +E FV+       +P+H   W   +R  T+A           Q+ AR WR+    RL+ +L            +   G I TAHH DD  ET  +KLLRG+HL++  GM  R+                       G + KP+L++RK  ++ +L SQ +EW+EDESN  +KYKRNK+R +++PL+ E+AGGE AL  R   +  QS+ + + L + A  +         LD+  +       + + I     L  L +EE LH ++ RVT   + ++Y Q++R   QL    NE      ++L+W +DVG+ W + R GD+L V    ++  ++   +   +H + L           +K+   S   + E     LP +   + L ++   D D    F P WR+G   IK+++FLRGQ VPLH R
Sbjct:  139 PPLVLVLA------RGESSDRDEGFVKALCQENGIPIHCYSWS--DRNNTSANRKDDSSESFTQDVARTWRKQTLGRLLLDLVVTPNHYRGTDTSERWGAILTAHHRDDVDETILLKLLRGSHLTNLWGMDARSDGFDLLALHDNDTVSKSPASTFTGYFAKPMLSIRKNDVLDYLNSQSIEWREDESNNSNKYKRNKIRNEVMPLLKELAGGEDALQKRFSNLEEQSRAISQHLLNRAEKY--------LLDMPSNSVFHLTILDSTI-----LFDLEREEALHLWLTRVTDNELQISYEQMKRIRHQL----NE----YPERLQWTIDVGNSWRVSRNGDILVVSNRHEDDNIQTTEKDNQIHWSVLRIENNDSSFSSSKQFTESEENAVELHFRSLPPMSDHSSLEIKRVNDIDGNATFLPPWRAGRSPIKVREFLRGQRVPLHCR 558          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: GAX29615.1 (tRNA(Ile)-lysidine synthase [Fistulifera solaris])

HSP 1 Score: 177.2 bits (448), Expect = 1.600e-40
Identity = 139/475 (29.26%), Postives = 218/475 (45.89%), Query Frame = 0
Query:   98 PCGLPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRA---------RW-------DPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAG-------IYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEEWDLILPHVPTGARLLLRHRQDGDRFHPAWRSG--SIKLKDFLRGQNVPLHRR 548
            PC + N Q  M    ++  VSGG DS+AL H L  +R          +W            L   HF+H  R E +  +   V        VP   + W +      +  QE AR WRR+   + ++EL              A G I TAHH DDS ET  +KLLRG+HL+   GM P           +V+PLL++ K +L+ +L+     W+EDESN+ D Y+RN+VR +L+PLM ++ GG+ A   R++ M  QS+ L   L    + +   ++ +   D       +    K+   L      L+ EE L+ +V+    G +S      + T EQL+R   +      ++ +W L++G GW + R+GDVLR+++  +  +   R  +        ++P  W+ +   ++I +    E+    +  V T +        D     P WR G   + LK+FLRGQ V LH R
Sbjct:   81 PC-VSNHQNNMTI-VLLAGVSGGCDSVALFHALQEIRQKDNSVNIPWKWTFVHNSSTTTFLLHAIHFDHQQRGENSTADRELVEALCQQYNVPCTTIFWNDEHHESFS--QENARNWRRSHMRQHLQEL---------ISKENATGFIVTAHHLDDSNETLLLKLLRGSHLTKLAGMNPIVTDEVDGNLYWVRPLLSLSKNQLMAYLQQNNYVWREDESNEKDIYQRNRVRNELIPLMKDLMGGDVAFQKRLDSMGAQSQKLRSDLTARVALYFKENTRQ---DTACPSRTILFIPKDTDRL-----DLVFEEALYDWVS--CHGVVSNCCSNHQFTYEQLQRLFRQLADYSHRR-KWSLNIGGGWDVQREGDVLRIVESSLSTDSVDRGHATQLVETASALPEDWKNDCYYLQIQV--PKEKTAKQINFVSTTSAY-----DDNLVITPPWRRGRSPLDLKEFLRGQKVALHNR 524          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: PQM54331.1 (tRNA lysidine(34) synthetase TilS [Deltaproteobacteria bacterium])

HSP 1 Score: 171.0 bits (432), Expect = 1.100e-38
Identity = 115/340 (33.82%), Postives = 178/340 (52.35%), Query Frame = 0
Query:  112 TIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEA--PLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVL 450
            T++ +VSGG DS+ALLHLL R R  +D  L   + HFNH LRPE+AQE++ FV++ A   ++P H      ++  Q +A QE AR WR  E   L+  L                G IAT H ADD +ET  +K LRGTH+S+ +GM      +++PLLN +K  L  +L++  L W ED SNQ   Y RN+VR++L+PL+ E+      L +R+ +++ QSK L ++L      WE  H  +A    D++             I +      LL+ E+LH F+   T   + L++ +++   +QL +D N           W +++   W++ + G  L
Sbjct:   35 TVLXSVSGGCDSVALLHLLQRQRNLFD--LEPHILHFNHQLRPESAQEQD-FVKSIAEHYEIPFHHKTAKHLKSGQ-SAXQESAREWRIEESRNLLNFL--------------GGGFIATGHQADDQIETLLLKWLRGTHISNMQGMQWTNEDFIRPLLNFKKSELKEYLKTNKLTWMEDTSNQSSAYLRNRVRIELIPLLEELT--RHGLHSRINDLSEQSKILRKFLDSNYETWEKNHKKQASNTQDVLH------------IEVLXQADDLLEHEILHNFITAHT--GLVLSFRKLQNIFDQLRKDSN----------LWEMNLSQEWIIKKSGKKL 330          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: CEM20566.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 155.6 bits (392), Expect = 4.900e-34
Identity = 142/489 (29.04%), Postives = 224/489 (45.81%), Query Frame = 0
Query:    5 RLWRPRSQ--IIPVIAMLLLRGSFTTHVRAATVVVPSTSGRTAAFILPINT-----RTRAHPLHRTPSIYSSSATVTTTPSQGHDDA--ARLLDEIEASLKGPCGLPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQ-TTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGI------------YVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAG---------------GEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKL---EWRLDVGDGWVLGRQGDVLRVIK 454
            R+WR      I+P+++M     +F   +     V P         ++P N       TRA  L R  ++  + + V   P   +  A  + LLD +E+ L+  C + +G        ++V+ SGG DS+ALLHLL R+R R+DPPL L   HF+H +R E+A E+  FV + A +L +   V V  + ER+  T+ +QE+AR WRR     ++ E           +     G +   H ADD +ET  MK+LRG H+S+ + MA +               +++PLL + K  L RFLE   L W++D SN   KY+RN+VRL L+PL+                    G   L+ R+  ++ QS  L E L  EA  WE                ++ + M++ + +    S +L+ E+L+R + R T  +   T       +EQL      ++     ++    WR  +   W    +G  LRV K
Sbjct:    2 RIWRISEALLIVPIVSMFCRCQAFLVALMKRE-VYPYRRELAWRRLIPPNAGNRRQSTRARRLVRQHALPQAGSAV---PEAANATAFTSSLLDRVESRLRDDCRVLDGA------FLLVSCSGGVDSVALLHLLHRLRGRFDPPLRLEAIHFDHRIRNESA-EDAAFVCDLAKSLGINATVEVLSDAERSTLTSGVQEKARRWRRERSREVLMERLSVDPDAGGCR----IGSVVLGHQADDQVETVIMKMLRGAHISNLRAMAFQDAAEEVELPLWMITSFIRPLLEIPKRDLQRFLEHHNLTWRDDPSNNEPKYRRNQVRLLLIPLLERXXXXXXXXXXXXXXXXXRGFDVLLRRIGALSRQSGQLRELLDKEAVEWE---------XXXXXXXQVWLPMEDWLDIG---SDMLRMEVLYRHLRRSTGRSCDYT------VLEQLAAKVKHSQWATPTRMGPQVWRFALPGQWEAEHKGTALRVRK 457          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: XP_002500637.1 (predicted protein, partial [Micromonas commoda] >ACO61895.1 predicted protein, partial [Micromonas commoda])

HSP 1 Score: 150.2 bits (378), Expect = 2.000e-32
Identity = 87/200 (43.50%), Postives = 120/200 (60.00%), Query Frame = 0
Query:  113 IVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLM 313
            +V+ VSGG DS+ALLHL+  +R  W   L L + HFNHG R E ++EEE FV++  A L V +H  V    +   T+  Q +AR WRR E E+L+                 A  VI   HHADD  ET  MK++RG H+S+  GM+ RAG Y +PLL+V K+ L R+L S+ LEW+ED SN    + RN+VR +L+P++
Sbjct:   23 VVLCVSGGVDSVALLHLMVELRQEW--ALDLHILHFNHGKRAE-SREEEAFVKDLGAKLGVEVH--VRRPTKAFDTSGFQAKARAWRRDEAEKLL--------------DAVAGQVILQGHHADDQTETVLMKMMRGCHVSNIAGMSHRAGNYGRPLLDVSKDELRRYLTSRALEWREDASNADVAFLRNRVRAELVPVL 203          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: WP_089943140.1 (tRNA lysidine(34) synthetase TilS [Candidatus Entotheonella palauensis] >ETX08163.1 hypothetical protein ETSY2_06970 [Candidatus Entotheonella gemina])

HSP 1 Score: 149.8 bits (377), Expect = 2.700e-32
Identity = 136/459 (29.63%), Postives = 207/459 (45.10%), Query Frame = 0
Query:   87 LLDEIEASLKGPCGLPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAI--QERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEEWDLILPHVPT-GARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNV 543
            L+ E+ + ++    LP+G        ++VAVSGG DSMALL LL  +RA +     L V H +H LR   A  + +FVR  AA L +P HVV        QT+ +  Q  AR  R A   +L R+L                  IA  H ADD +ET+ M+LLRGT  +   GM P    Y++PL+++R++ L+ FL  +G+ W +D SN    Y+RN+VRL +LP++ +       +  R+ E+T         L  +  AW        P  + Q      +    A     PL+  ++  LL R   R      ++ +  + R    L      T G    K+  RL +   W++ R  DV  + +     +G  +  ++   G T        V A+ ++ + SP +   D++     T    L++R R  G RFHP    G  KLK FL  Q V
Sbjct:   18 LITEVRSYIESYDMLPHG------GAVLVAVSGGPDSMALLALLHHLRAIYKS--HLKVVHIDHQLRGREAVRDALFVRQQAARLGLPCHVVRVDAKRFRQTSGLSPQHAARELRYAALAKLQRQL--------------GADRIALGHIADDQIETFLMRLLRGTGPAGLAGMPPIRPPYIRPLMSIRRQTLIDFLRVEGIPWVQDSSNLKRIYQRNRVRLDVLPILRQY---NPQIDRRLYELTDMMAAEHHLLERQVDAW-------YPCIVRQRSRHKFLLQCRAYE-HVPLA--IQRRLLRRLTDRYLSVPAAVRFHHIERLRLLL------THG----KVGQRLTLPGQWMVERHHDVATMWRGHAPADGV-QAATLSVPGQTALQELDAVVTAEFLDAAPSPLAPGRDVVYIDAATIQTPLMIRSRWPGARFHPLGAPGHKKLKSFLIDQKV 430          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: AEG13854.1 (tRNA(Ile)-lysidine synthase [Desulfotomaculum kuznetsovii DSM 6115])

HSP 1 Score: 141.7 bits (356), Expect = 7.300e-30
Identity = 133/444 (29.95%), Postives = 201/444 (45.27%), Query Frame = 0
Query:  109 PFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLR--VIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSS---EEWDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRR 548
            P   ++V VSGG DS+ALLHLL R++   +  +SL VAH NH  R E A+ +   V   A +L +P+H      VE     A +ER  G    +  R VR            + T A  V A  HHADD  ET     LRGT L+  KG+ P  G Y++PLL++R+  +  +     L  +ED SN+   Y RN++RL+L+P +   A     L+  +  +    +   ++L  +A+   GR          Q  + L   +   +S    L R     +L R    +T G + L+Y QV   +  L    +   GG+       +++  G    RQG VLR  +  D  G+   S  + +   G+T+       ++A+ I I  +P        + +L +      L +R R+DGDRFHP       KLK FL  Q +P   R
Sbjct:   19 PGDKVLVGVSGGPDSVALLHLLWRMKE--ELQISLAVAHLNHMFRGEEARADARLVEGLAKSLGLPVH------VEEFDVPAYRERT-GLSAQDAARRVR----YRFFEEVARRTGASRV-ALGHHADDQAETILFNFLRGTGLAGLKGIPPVRGKYIRPLLDIRRREIEDYCREHSLPVREDASNKKTIYTRNRIRLELIPRLE--ADYNPRLVDALVHLGHICREENDYLEEQAALLYGRALK------TQKEHYLLFAVTELLSSPPALVR----RVLRRAWRHLT-GEVDLSYLQVESLLALL----HNPAGGKV------VELPRGVRASRQGQVLRLWIGGDAPGVPDYSYPLEV--PGITYIPEINSSIKARLISIDEAPDPRFLSAREALLDYDTLPGLLAVRRRRDGDRFHPLGMPARTKLKKFLIEQGIPRQER 423          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: WP_027717444.1 (tRNA lysidine(34) synthetase TilS [Desulfovirgula thermocuniculi])

HSP 1 Score: 140.6 bits (353), Expect = 1.600e-29
Identity = 135/450 (30.00%), Postives = 205/450 (45.56%), Query Frame = 0
Query:  109 PFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTT--AIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLP-LMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWV--------LGRQGDVLRVIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEEWDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRR 548
            P   ++VAVSGG DS+ALLHLL R+RA  +  +SL VAH NH +R E A+ + +FV++ A +L +   V  +      + T  ++QE AR  R    E L R                    +A  HHADD  ET  +  LRG   +  KG+ P  GIY++PLL VR++ +  +     L  +ED SN+   Y RN++RL+L+P L  E        +  + E           L  E +A+    +A    + +++     + +       AP  R L   ++ +   R+T     L++ +V   M  LE      EGG  + +E    VG   +         G + + +   +  + + GA+ +  +  T +   VP G     K    +LSP     D  L  +P GA L +R R +GDRFHP    G+ KLK FL  Q VP   R
Sbjct:   19 PGDRVLVAVSGGPDSVALLHLLWRLRA--ELGISLAVAHLNHMIRGEEARADALFVQDLARSLGLAAFVEEFDVPAFREKTRLSLQEAAREARYQFLEALARR--------------EGTSRVALGHHADDQAETVLLNFLRGAGPAGLKGIPPVRGIYIRPLLCVRRKEIEAYCRQFSLPAREDPSNKKPVYTRNRLRLELIPHLEKEYNPRLVRSLVNLAE-----------LCREENAYLEEQAARLLQEALRAAGGGALALDARALRSAP--RALARRVVRQAWRRLTGAPGELSFERVEAVMGLLE------EGGEGRLVELPRRVGVRRLGGELRFAAAGEEEEGVPFYRYPLAVPGATYIPEIDRTVVARLVPVGEAPPPK----NLSPREALLDYDL--LPPGA-LEVRRRCEGDRFHPLGLPGATKLKKFLINQGVPRAER 426          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: WP_072867751.1 (tRNA lysidine(34) synthetase TilS [Desulfotomaculum thermosubterraneum] >SHI77970.1 tRNA(Ile)-lysidine synthase [Desulfotomaculum thermosubterraneum DSM 16057])

HSP 1 Score: 140.2 bits (352), Expect = 2.100e-29
Identity = 133/444 (29.95%), Postives = 207/444 (46.62%), Query Frame = 0
Query:  109 PFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLR--VIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSP---SSEEWDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRR 548
            P   ++V VSGG DS+ALLHLL R++   +  +SL VAH NH  R E A+ +   V   A +L +P++      VE     A +ER  G    +  R VR            + T A  V A  HHADD  ET     LRGT L+  KG+ P  G Y++PLL++R+  +  +     L  +ED SN+   Y RN++RL+L+P +   A     L+  +  +    +   ++L  +A+   GR         +++  E C+    A  L +P +  L   +L R    +T G   L+Y QV   +  L    +   GG+       +++  G    RQG VLR  +  D  G+   S  + +   G+T+       V+A+ I I+ +P   S    + +L +      L +R R++GDRF P   +  +KLK FL  Q +P   R
Sbjct:   19 PGDKVLVGVSGGPDSVALLHLLWRMKG--ELQISLAVAHLNHMFRGEEARADARLVEGLAKSLGLPVY------VEEFDVPAYRERT-GLSAQDAARRVR----YRFFEEVARRTGASRV-ALGHHADDQAETILFNFLRGTGLAGLKGIPPVRGKYIRPLLDIRRREIEDYCREHSLPVREDASNKKTIYTRNRIRLELIPRLE--ADFNPRLVDALVHLGHICREENDYLEEQAALLYGR--------ALKNQKEHCLLFAVAELLSSPPA--LVRRVLRRAWRHLT-GEADLSYLQVECLLALL----HNPVGGKV------VELPRGVRASRQGQVLRLWIGGDAPGVPDYSYPLEV--PGITYIPEINSSVKARLISINDAPDPRSLSAREALLDYDTLPGLLTVRRRREGDRFQPLGMAAHVKLKKFLIEQGIPREER 423          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: WP_027397466.1 (tRNA lysidine(34) synthetase TilS [Anaerovibrio lipolyticus])

HSP 1 Score: 139.0 bits (349), Expect = 4.700e-29
Identity = 119/433 (27.48%), Postives = 209/433 (48.27%), Query Frame = 0
Query:  107 TMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWG--EVERAQTTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIE-ISLSPSSEEWDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDF 537
            T P +T++VA SGG DS+ALL +L  ++ +    + +  AHF HG+R +A++++E FV+N     ++P +       E+ RA+  +++  AR  R A  ++L  EL                  IATAHHADD  ET  M LLRGT L+   G+ P+ G  ++PLL   K  LV +   QGL  + D +N+     RN++RL+LLPL+ +        + R      ++   EE L HE +       AE  L       E    +K +  +  PL+  ++  L+ + V++++ G  +L++  +   +E ++R+   +      +   ++   D + L ++ +  +++     +E     I   + G +  +P G  + A   + +    S  +  +       G  L++R+R DGDR    + +GS KLKDF
Sbjct:   17 TEPGNTVIVACSGGPDSLALLDILWSLKEKL--AIKVVAAHFEHGIRGQASKDDESFVKNYCLEREIPFYSESANIPELSRARGESLETCARQMRYAFLDKLAGEL--------------GNAFIATAHHADDQAETVLMHLLRGTGLNGLTGILPKRGNIIRPLLAFTKAELVEYCHHQGLSPRHDATNEETDCTRNRLRLQLLPLLKKEYNKN---ITRSLCNLAETASAEEELLHELTI-----KAEERLCQFDGQGENSYKIKISDFIKEPLA--IRRRLIQQMVSKISHGT-ALSFQHIEAVLELIDRNATGSSLNLPDRCTAKISY-DFFYLSKKTE--KILTSHGTIEDTPYKIL--KLGSSVVLPYGDTISAYVADSLEGEKSFSKNKIYCDAARCGTELMVRYRHDGDRIR--FENGSKKLKDF 415          
The following BLAST results are available for this feature:
BLAST of NO11G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002288790.17.000e-4130.73predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX29615.11.600e-4029.26tRNA(Ile)-lysidine synthase [Fistulifera solaris][more]
PQM54331.11.100e-3833.82tRNA lysidine(34) synthetase TilS [Deltaproteobact... [more]
CEM20566.14.900e-3429.04unnamed protein product [Vitrella brassicaformis C... [more]
XP_002500637.12.000e-3243.50predicted protein, partial [Micromonas commoda] >A... [more]
WP_089943140.12.700e-3229.63tRNA lysidine(34) synthetase TilS [Candidatus Ento... [more]
AEG13854.17.300e-3029.95tRNA(Ile)-lysidine synthase [Desulfotomaculum kuzn... [more]
WP_027717444.11.600e-2930.00tRNA lysidine(34) synthetase TilS [Desulfovirgula ... [more]
WP_072867751.12.100e-2929.95tRNA lysidine(34) synthetase TilS [Desulfotomaculu... [more]
WP_027397466.14.700e-2927.48tRNA lysidine(34) synthetase TilS [Anaerovibrio li... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002012NSK002012Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02430.1NO11G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639668gene_5138Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100186g4gene5524Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02430.1NO11G02430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02430 ID=NO11G02430|Name=NO11G02430|organism=Nannochloropsis oceanica|type=gene|length=1973bp
CAGGTCAGGACGTTGAGGGGCTCCTGGCCGCCATGATAACCAGGCATCTT
TAAGCACAAGCACCCTCGCCACCATCTACTACCGTCAGGCCTTTACATTG
GCATCGTACATGTCCTGGAGGAGGCTGTGGCGTCCACGCAGCCAGATCAT
CCCCGTCATTGCCATGCTTCTGCTGCGGGGCTCATTCACTACTCATGTGC
GGGCCGCGACTGTCGTCGTCCCCAGCACAAGTGGCAGGACAGCAGCATTC
ATTCTTCCCATCAACACAAGAACACGCGCTCACCCGCTTCATCGGACACC
TTCCATCTACTCCTCATCTGCTACTGTGACCACTACCCCATCCCAAGGTC
ACGATGACGCTGCCCGCCTACTAGATGAGATCGAAGCCTCTCTCAAAGGC
CCTTGTGGCTTACCCAACGGCCAGGGAACCATGCCGTTTCACACCATCGT
TGTCGCTGTTTCGGGTGGAGCAGATTCCATGGCTTTATTGCACCTCTTGG
CCCGGGTTCGTGCCCGATGGGACCCGCCTCTCAGCCTTACTGTCGCGCAT
TTCAATCACGGCTTGCGTCCCGAGGCAGCGCAGGAAGAAGAGGTGTTTGT
CCGCAACGCAGCAGCAACTTTGCAGGTACCCATGCACGTCGTAGTGTGGG
GAGAGGTGGAGCGGGCGCAAACCACGGCCATCCAAGAACGGGCCCGGGGT
TGGCGCCGAGCCGAATGCGAGCGACTCGTGCGGGAGCTGCAGCAGCAGCA
GAGAGGAGGAGCAGCAGCAAAACCAACAGCAGCGCAAGGTGTGATTGCCA
CGGCGCACCATGCCGACGATTCTCTTGAGACCTGGGCGATGAAACTCTTG
CGAGGGACACATTTAAGCCACACAAAAGGAATGGCACCACGCGCGGGCAT
TTATGTCAAGCCCCTGTTAAACGTCCGCAAAGAAAGACTCGTTCGCTTCC
TGGAATCCCAAGGCCTGGAATGGAAAGAAGACGAGTCCAACCAGATTGAT
AAGTACAAACGGAATAAGGTACGTTTGAAGTTGTTGCCATTGATGGCTGA
GGTGGCCGGGGGCGAAGCTGCCTTGATGGCAAGGATGGAGGAGATGACCT
GCCAAAGCAAGGGGTTGGAGGAGTGGTTGGCCCATGAGGCGAGTGCCTGG
GAGGGACGCCATTCAGCAGAGGCACCGTTGGATATCGTTCAAAGTGGGAA
TGAATTGTGTATCGGTATGAAAAATGCGATTTCTCTATGGGCGCCCTTGT
CTCGTCTGCTCAAGGAAGAATTGTTGCACCGCTTCGTGGCCCGTGTCACA
AAAGGTGCCATCAGCTTGACTTACGGCCAAGTTCGTCGAACGATGGAGCA
ACTGGAGAGAGATGAGAATGAGACGGAGGGAGGACGGAAAAAGAAGTTAG
AATGGCGCCTGGATGTAGGAGACGGGTGGGTGTTGGGTCGGCAGGGCGAT
GTGTTACGGGTAATAAAGGATGAAATAGGTCTAGAAGGAGCAAGCCGTAT
GATCTCCATGCACGAGACAGGCCTCACTTTTTCCGTGCCTACAGGTTGGG
AAGTAGAGGCGAAGCGCATAGAGATCTCTCTTTCTCCTTCATCAGAAGAG
TGGGATTTGATCCTCCCTCATGTCCCCACGGGAGCCCGTCTCCTGCTTCG
GCACCGGCAAGACGGCGACCGCTTCCACCCTGCATGGCGCTCGGGTTCTA
TCAAGCTCAAAGACTTTCTGCGGGGTCAAAATGTGCCCTTGCACCGACGG
GACGAGATCTTACTGGTGGTGTTGCTGTCGGCCAGTGGGAAGGAGGAGGA
GGAGGAGGCGGAGGAGGAGGAAAGAGTATTGGGTCTCTACCCAACAGGGC
ACGTGGCAGCGGCGCCTGCGGGAGCAAATGTTAATGTACAACCTTTGGGG
TTGCGATTTAAAAGAGAGGGATTATGAACGTGTAAAAAGTAATGTAAAGA
AAAAAGAATCGGAAAGAATGACA
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protein sequence of NO11G02430.1

>NO11G02430.1-protein ID=NO11G02430.1-protein|Name=NO11G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp
MSWRRLWRPRSQIIPVIAMLLLRGSFTTHVRAATVVVPSTSGRTAAFILP
INTRTRAHPLHRTPSIYSSSATVTTTPSQGHDDAARLLDEIEASLKGPCG
LPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNH
GLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRR
AECERLVRELQQQQRGGAAAKPTAAQGVIATAHHADDSLETWAMKLLRGT
HLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYK
RNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGR
HSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGA
ISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLR
VIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEEWDL
ILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRRDEI
LLVVLLSASGKEEEEEAEEEERVLGLYPTGHVAAAPAGANVNVQPLGLRF
KREGL*
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Synonyms
Publications