NO11G02430.1, NO11G02430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02430.1
Unique NameNO11G02430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1973
Alignment locationchr11:770837..772809 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:770837..772809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G02430.1 vs.
Match: EWM24970.1 (trna -lysidine synthetase [Nannochloropsis gaditana])

HSP 1 Score: 592.4 bits (1526), Expect = 1.600e-165
Identity = 318/598 (53.18%), Postives = 405/598 (67.73%), Query Frame = 0
Query:   70 SATVTTTPSQGHDDAARLLDEIEASLKGPCGLPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRRAECERLVRELQ---QQQRG--------------GAAAKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIG------MKNAIS------------------------------LWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEI-----GL-EGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEE---WDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRRDEILLVVLLSASGKEEEEEAEEEERVLGLYPTGHVAAA---PAGANVNVQPLGLRFKR 603
            S T  T+P   ++ ++ LLD +EA LKGPC L + +G+ P H +V+AVSGGADSMALLHLL R+R RW+PPL LTVAHFNHGLRPEA +EE  FV +AAA L VP+H   W E ER+++  +Q RAR WRR ECERL++E +   + QRG              G  ++   AQGVIATAHHADDSLETW +KLLRG H+SH +GM PRAG YVKPLL++ K RLVRFLE +GL W+ED SNQ +KYKRNKVRL+LLPLMAE+AGGE AL ARMEEM  QS+GLE+W+   A  WE RHSA APLD+V +G EL +G      + +A+S                              LWAPL RLL+EELLHR  AR + GA+SL+Y Q+RR MEQL+RDE+E +GG KKKL+WRL++G+GW+L RQG VLR+++++      G+ +  +  +S+ + G+   +PTGW++ A R+  S S SS     W ++LPHVPTGARL LRHRQ+GDRFHP WR   +KLKDFLR QNVPLHRRDE++LVVLLS      +EE      V+GL+P G VAA        N  ++PL +R  +
Sbjct:   72 SVTPVTSPVPENETSSWLLDHVEACLKGPCRLSDSRGSAPAHHVVIAVSGGADSMALLHLLTRIRKRWEPPLKLTVAHFNHGLRPEAVKEE-AFVLDAAARLGVPVHTASWQEEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAGPYVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLVVLLSNGPLGVKEE------VIGLHPLGCVAAPSLDSQATNSALEPLAIRLMK 662          
The following BLAST results are available for this feature:
BLAST of NO11G02430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24970.11.600e-16553.18trna -lysidine synthetase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02430NO11G02430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02430.1NO11G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02430.1.cds1NO11G02430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02430.1 ID=NO11G02430.1|Name=NO11G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1973bp
CAGGTCAGGACGTTGAGGGGCTCCTGGCCGCCATGATAACCAGGCATCTT
TAAGCACAAGCACCCTCGCCACCATCTACTACCGTCAGGCCTTTACATTG
GCATCGTACATGTCCTGGAGGAGGCTGTGGCGTCCACGCAGCCAGATCAT
CCCCGTCATTGCCATGCTTCTGCTGCGGGGCTCATTCACTACTCATGTGC
GGGCCGCGACTGTCGTCGTCCCCAGCACAAGTGGCAGGACAGCAGCATTC
ATTCTTCCCATCAACACAAGAACACGCGCTCACCCGCTTCATCGGACACC
TTCCATCTACTCCTCATCTGCTACTGTGACCACTACCCCATCCCAAGGTC
ACGATGACGCTGCCCGCCTACTAGATGAGATCGAAGCCTCTCTCAAAGGC
CCTTGTGGCTTACCCAACGGCCAGGGAACCATGCCGTTTCACACCATCGT
TGTCGCTGTTTCGGGTGGAGCAGATTCCATGGCTTTATTGCACCTCTTGG
CCCGGGTTCGTGCCCGATGGGACCCGCCTCTCAGCCTTACTGTCGCGCAT
TTCAATCACGGCTTGCGTCCCGAGGCAGCGCAGGAAGAAGAGGTGTTTGT
CCGCAACGCAGCAGCAACTTTGCAGGTACCCATGCACGTCGTAGTGTGGG
GAGAGGTGGAGCGGGCGCAAACCACGGCCATCCAAGAACGGGCCCGGGGT
TGGCGCCGAGCCGAATGCGAGCGACTCGTGCGGGAGCTGCAGCAGCAGCA
GAGAGGAGGAGCAGCAGCAAAACCAACAGCAGCGCAAGGTGTGATTGCCA
CGGCGCACCATGCCGACGATTCTCTTGAGACCTGGGCGATGAAACTCTTG
CGAGGGACACATTTAAGCCACACAAAAGGAATGGCACCACGCGCGGGCAT
TTATGTCAAGCCCCTGTTAAACGTCCGCAAAGAAAGACTCGTTCGCTTCC
TGGAATCCCAAGGCCTGGAATGGAAAGAAGACGAGTCCAACCAGATTGAT
AAGTACAAACGGAATAAGGTACGTTTGAAGTTGTTGCCATTGATGGCTGA
GGTGGCCGGGGGCGAAGCTGCCTTGATGGCAAGGATGGAGGAGATGACCT
GCCAAAGCAAGGGGTTGGAGGAGTGGTTGGCCCATGAGGCGAGTGCCTGG
GAGGGACGCCATTCAGCAGAGGCACCGTTGGATATCGTTCAAAGTGGGAA
TGAATTGTGTATCGGTATGAAAAATGCGATTTCTCTATGGGCGCCCTTGT
CTCGTCTGCTCAAGGAAGAATTGTTGCACCGCTTCGTGGCCCGTGTCACA
AAAGGTGCCATCAGCTTGACTTACGGCCAAGTTCGTCGAACGATGGAGCA
ACTGGAGAGAGATGAGAATGAGACGGAGGGAGGACGGAAAAAGAAGTTAG
AATGGCGCCTGGATGTAGGAGACGGGTGGGTGTTGGGTCGGCAGGGCGAT
GTGTTACGGGTAATAAAGGATGAAATAGGTCTAGAAGGAGCAAGCCGTAT
GATCTCCATGCACGAGACAGGCCTCACTTTTTCCGTGCCTACAGGTTGGG
AAGTAGAGGCGAAGCGCATAGAGATCTCTCTTTCTCCTTCATCAGAAGAG
TGGGATTTGATCCTCCCTCATGTCCCCACGGGAGCCCGTCTCCTGCTTCG
GCACCGGCAAGACGGCGACCGCTTCCACCCTGCATGGCGCTCGGGTTCTA
TCAAGCTCAAAGACTTTCTGCGGGGTCAAAATGTGCCCTTGCACCGACGG
GACGAGATCTTACTGGTGGTGTTGCTGTCGGCCAGTGGGAAGGAGGAGGA
GGAGGAGGCGGAGGAGGAGGAAAGAGTATTGGGTCTCTACCCAACAGGGC
ACGTGGCAGCGGCGCCTGCGGGAGCAAATGTTAATGTACAACCTTTGGGG
TTGCGATTTAAAAGAGAGGGATTATGAACGTGTAAAAAGTAATGTAAAGA
AAAAAGAATCGGAAAGAATGACA
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protein sequence of NO11G02430.1

>NO11G02430.1-protein ID=NO11G02430.1-protein|Name=NO11G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp
MSWRRLWRPRSQIIPVIAMLLLRGSFTTHVRAATVVVPSTSGRTAAFILP
INTRTRAHPLHRTPSIYSSSATVTTTPSQGHDDAARLLDEIEASLKGPCG
LPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNH
GLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRR
AECERLVRELQQQQRGGAAAKPTAAQGVIATAHHADDSLETWAMKLLRGT
HLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYK
RNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGR
HSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGA
ISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLR
VIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEEWDL
ILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRRDEI
LLVVLLSASGKEEEEEAEEEERVLGLYPTGHVAAAPAGANVNVQPLGLRF
KREGL*
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mRNA from alignment at chr11:770837..772809-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02430.1 ID=NO11G02430.1|Name=NO11G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1973bp|location=Sequence derived from alignment at chr11:770837..772809- (Nannochloropsis oceanica)
CAGGTCAGGACGTTGAGGGGCTCCTGGCCGCCATGATAACCAGGCATCTT TAAGCACAAGCACCCTCGCCACCATCTACTACCGTCAGGCCTTTACATTG GCATCGTACATGTCCTGGAGGAGGCTGTGGCGTCCACGCAGCCAGATCAT CCCCGTCATTGCCATGCTTCTGCTGCGGGGCTCATTCACTACTCATGTGC GGGCCGCGACTGTCGTCGTCCCCAGCACAAGTGGCAGGACAGCAGCATTC ATTCTTCCCATCAACACAAGAACACGCGCTCACCCGCTTCATCGGACACC TTCCATCTACTCCTCATCTGCTACTGTGACCACTACCCCATCCCAAGGTC ACGATGACGCTGCCCGCCTACTAGATGAGATCGAAGCCTCTCTCAAAGGC CCTTGTGGCTTACCCAACGGCCAGGGAACCATGCCGTTTCACACCATCGT TGTCGCTGTTTCGGGTGGAGCAGATTCCATGGCTTTATTGCACCTCTTGG CCCGGGTTCGTGCCCGATGGGACCCGCCTCTCAGCCTTACTGTCGCGCAT TTCAATCACGGCTTGCGTCCCGAGGCAGCGCAGGAAGAAGAGGTGTTTGT CCGCAACGCAGCAGCAACTTTGCAGGTACCCATGCACGTCGTAGTGTGGG GAGAGGTGGAGCGGGCGCAAACCACGGCCATCCAAGAACGGGCCCGGGGT TGGCGCCGAGCCGAATGCGAGCGACTCGTGCGGGAGCTGCAGCAGCAGCA GAGAGGAGGAGCAGCAGCAAAACCAACAGCAGCGCAAGGTGTGATTGCCA CGGCGCACCATGCCGACGATTCTCTTGAGACCTGGGCGATGAAACTCTTG CGAGGGACACATTTAAGCCACACAAAAGGAATGGCACCACGCGCGGGCAT TTATGTCAAGCCCCTGTTAAACGTCCGCAAAGAAAGACTCGTTCGCTTCC TGGAATCCCAAGGCCTGGAATGGAAAGAAGACGAGTCCAACCAGATTGAT AAGTACAAACGGAATAAGGTACGTTTGAAGTTGTTGCCATTGATGGCTGA GGTGGCCGGGGGCGAAGCTGCCTTGATGGCAAGGATGGAGGAGATGACCT GCCAAAGCAAGGGGTTGGAGGAGTGGTTGGCCCATGAGGCGAGTGCCTGG GAGGGACGCCATTCAGCAGAGGCACCGTTGGATATCGTTCAAAGTGGGAA TGAATTGTGTATCGGTATGAAAAATGCGATTTCTCTATGGGCGCCCTTGT CTCGTCTGCTCAAGGAAGAATTGTTGCACCGCTTCGTGGCCCGTGTCACA AAAGGTGCCATCAGCTTGACTTACGGCCAAGTTCGTCGAACGATGGAGCA ACTGGAGAGAGATGAGAATGAGACGGAGGGAGGACGGAAAAAGAAGTTAG AATGGCGCCTGGATGTAGGAGACGGGTGGGTGTTGGGTCGGCAGGGCGAT GTGTTACGGGTAATAAAGGATGAAATAGGTCTAGAAGGAGCAAGCCGTAT GATCTCCATGCACGAGACAGGCCTCACTTTTTCCGTGCCTACAGGTTGGG AAGTAGAGGCGAAGCGCATAGAGATCTCTCTTTCTCCTTCATCAGAAGAG TGGGATTTGATCCTCCCTCATGTCCCCACGGGAGCCCGTCTCCTGCTTCG GCACCGGCAAGACGGCGACCGCTTCCACCCTGCATGGCGCTCGGGTTCTA TCAAGCTCAAAGACTTTCTGCGGGGTCAAAATGTGCCCTTGCACCGACGG GACGAGATCTTACTGGTGGTGTTGCTGTCGGCCAGTGGGAAGGAGGAGGA GGAGGAGGCGGAGGAGGAGGAAAGAGTATTGGGTCTCTACCCAACAGGGC ACGTGGCAGCGGCGCCTGCGGGAGCAAATGTTAATGTACAACCTTTGGGG TTGCGATTTAAAAGAGAGGGATTATGAACGTGTAAAAAGTAATGTAAAGA AAAAAGAATCGGAAAGAATGACA
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Coding sequence (CDS) from alignment at chr11:770837..772809-

>NO11G02430.1 ID=NO11G02430.1|Name=NO11G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at chr11:770837..772809- (Nannochloropsis oceanica)
ATGTCCTGGAGGAGGCTGTGGCGTCCACGCAGCCAGATCATCCCCGTCAT
TGCCATGCTTCTGCTGCGGGGCTCATTCACTACTCATGTGCGGGCCGCGA
CTGTCGTCGTCCCCAGCACAAGTGGCAGGACAGCAGCATTCATTCTTCCC
ATCAACACAAGAACACGCGCTCACCCGCTTCATCGGACACCTTCCATCTA
CTCCTCATCTGCTACTGTGACCACTACCCCATCCCAAGGTCACGATGACG
CTGCCCGCCTACTAGATGAGATCGAAGCCTCTCTCAAAGGCCCTTGTGGC
TTACCCAACGGCCAGGGAACCATGCCGTTTCACACCATCGTTGTCGCTGT
TTCGGGTGGAGCAGATTCCATGGCTTTATTGCACCTCTTGGCCCGGGTTC
GTGCCCGATGGGACCCGCCTCTCAGCCTTACTGTCGCGCATTTCAATCAC
GGCTTGCGTCCCGAGGCAGCGCAGGAAGAAGAGGTGTTTGTCCGCAACGC
AGCAGCAACTTTGCAGGTACCCATGCACGTCGTAGTGTGGGGAGAGGTGG
AGCGGGCGCAAACCACGGCCATCCAAGAACGGGCCCGGGGTTGGCGCCGA
GCCGAATGCGAGCGACTCGTGCGGGAGCTGCAGCAGCAGCAGAGAGGAGG
AGCAGCAGCAAAACCAACAGCAGCGCAAGGTGTGATTGCCACGGCGCACC
ATGCCGACGATTCTCTTGAGACCTGGGCGATGAAACTCTTGCGAGGGACA
CATTTAAGCCACACAAAAGGAATGGCACCACGCGCGGGCATTTATGTCAA
GCCCCTGTTAAACGTCCGCAAAGAAAGACTCGTTCGCTTCCTGGAATCCC
AAGGCCTGGAATGGAAAGAAGACGAGTCCAACCAGATTGATAAGTACAAA
CGGAATAAGGTACGTTTGAAGTTGTTGCCATTGATGGCTGAGGTGGCCGG
GGGCGAAGCTGCCTTGATGGCAAGGATGGAGGAGATGACCTGCCAAAGCA
AGGGGTTGGAGGAGTGGTTGGCCCATGAGGCGAGTGCCTGGGAGGGACGC
CATTCAGCAGAGGCACCGTTGGATATCGTTCAAAGTGGGAATGAATTGTG
TATCGGTATGAAAAATGCGATTTCTCTATGGGCGCCCTTGTCTCGTCTGC
TCAAGGAAGAATTGTTGCACCGCTTCGTGGCCCGTGTCACAAAAGGTGCC
ATCAGCTTGACTTACGGCCAAGTTCGTCGAACGATGGAGCAACTGGAGAG
AGATGAGAATGAGACGGAGGGAGGACGGAAAAAGAAGTTAGAATGGCGCC
TGGATGTAGGAGACGGGTGGGTGTTGGGTCGGCAGGGCGATGTGTTACGG
GTAATAAAGGATGAAATAGGTCTAGAAGGAGCAAGCCGTATGATCTCCAT
GCACGAGACAGGCCTCACTTTTTCCGTGCCTACAGGTTGGGAAGTAGAGG
CGAAGCGCATAGAGATCTCTCTTTCTCCTTCATCAGAAGAGTGGGATTTG
ATCCTCCCTCATGTCCCCACGGGAGCCCGTCTCCTGCTTCGGCACCGGCA
AGACGGCGACCGCTTCCACCCTGCATGGCGCTCGGGTTCTATCAAGCTCA
AAGACTTTCTGCGGGGTCAAAATGTGCCCTTGCACCGACGGGACGAGATC
TTACTGGTGGTGTTGCTGTCGGCCAGTGGGAAGGAGGAGGAGGAGGAGGC
GGAGGAGGAGGAAAGAGTATTGGGTCTCTACCCAACAGGGCACGTGGCAG
CGGCGCCTGCGGGAGCAAATGTTAATGTACAACCTTTGGGGTTGCGATTT
AAAAGAGAGGGATTATGA
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Synonyms
Publications