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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:770837..772809 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02430.1 vs.
Match: EWM24970.1 (trna -lysidine synthetase [Nannochloropsis gaditana]) HSP 1 Score: 592.4 bits (1526), Expect = 1.600e-165 Identity = 318/598 (53.18%), Postives = 405/598 (67.73%), Query Frame = 0
Query: 70 SATVTTTPSQGHDDAARLLDEIEASLKGPCGLPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRRAECERLVRELQ---QQQRG--------------GAAAKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIG------MKNAIS------------------------------LWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEI-----GL-EGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEE---WDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRRDEILLVVLLSASGKEEEEEAEEEERVLGLYPTGHVAAA---PAGANVNVQPLGLRFKR 603
S T T+P ++ ++ LLD +EA LKGPC L + +G+ P H +V+AVSGGADSMALLHLL R+R RW+PPL LTVAHFNHGLRPEA +EE FV +AAA L VP+H W E ER+++ +Q RAR WRR ECERL++E + + QRG G ++ AQGVIATAHHADDSLETW +KLLRG H+SH +GM PRAG YVKPLL++ K RLVRFLE +GL W+ED SNQ +KYKRNKVRL+LLPLMAE+AGGE AL ARMEEM QS+GLE+W+ A WE RHSA APLD+V +G EL +G + +A+S LWAPL RLL+EELLHR AR + GA+SL+Y Q+RR MEQL+RDE+E +GG KKKL+WRL++G+GW+L RQG VLR+++++ G+ + + +S+ + G+ +PTGW++ A R+ S S SS W ++LPHVPTGARL LRHRQ+GDRFHP WR +KLKDFLR QNVPLHRRDE++LVVLLS +EE V+GL+P G VAA N ++PL +R +
Sbjct: 72 SVTPVTSPVPENETSSWLLDHVEACLKGPCRLSDSRGSAPAHHVVIAVSGGADSMALLHLLTRIRKRWEPPLKLTVAHFNHGLRPEAVKEE-AFVLDAAARLGVPVHTASWQEEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAGPYVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLVVLLSNGPLGVKEE------VIGLHPLGCVAAPSLDSQATNSALEPLAIRLMK 662
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02430.1 ID=NO11G02430.1|Name=NO11G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1973bp CAGGTCAGGACGTTGAGGGGCTCCTGGCCGCCATGATAACCAGGCATCTT TAAGCACAAGCACCCTCGCCACCATCTACTACCGTCAGGCCTTTACATTG GCATCGTACATGTCCTGGAGGAGGCTGTGGCGTCCACGCAGCCAGATCAT CCCCGTCATTGCCATGCTTCTGCTGCGGGGCTCATTCACTACTCATGTGC GGGCCGCGACTGTCGTCGTCCCCAGCACAAGTGGCAGGACAGCAGCATTC ATTCTTCCCATCAACACAAGAACACGCGCTCACCCGCTTCATCGGACACC TTCCATCTACTCCTCATCTGCTACTGTGACCACTACCCCATCCCAAGGTC ACGATGACGCTGCCCGCCTACTAGATGAGATCGAAGCCTCTCTCAAAGGC CCTTGTGGCTTACCCAACGGCCAGGGAACCATGCCGTTTCACACCATCGT TGTCGCTGTTTCGGGTGGAGCAGATTCCATGGCTTTATTGCACCTCTTGG CCCGGGTTCGTGCCCGATGGGACCCGCCTCTCAGCCTTACTGTCGCGCAT TTCAATCACGGCTTGCGTCCCGAGGCAGCGCAGGAAGAAGAGGTGTTTGT CCGCAACGCAGCAGCAACTTTGCAGGTACCCATGCACGTCGTAGTGTGGG GAGAGGTGGAGCGGGCGCAAACCACGGCCATCCAAGAACGGGCCCGGGGT TGGCGCCGAGCCGAATGCGAGCGACTCGTGCGGGAGCTGCAGCAGCAGCA GAGAGGAGGAGCAGCAGCAAAACCAACAGCAGCGCAAGGTGTGATTGCCA CGGCGCACCATGCCGACGATTCTCTTGAGACCTGGGCGATGAAACTCTTG CGAGGGACACATTTAAGCCACACAAAAGGAATGGCACCACGCGCGGGCAT TTATGTCAAGCCCCTGTTAAACGTCCGCAAAGAAAGACTCGTTCGCTTCC TGGAATCCCAAGGCCTGGAATGGAAAGAAGACGAGTCCAACCAGATTGAT AAGTACAAACGGAATAAGGTACGTTTGAAGTTGTTGCCATTGATGGCTGA GGTGGCCGGGGGCGAAGCTGCCTTGATGGCAAGGATGGAGGAGATGACCT GCCAAAGCAAGGGGTTGGAGGAGTGGTTGGCCCATGAGGCGAGTGCCTGG GAGGGACGCCATTCAGCAGAGGCACCGTTGGATATCGTTCAAAGTGGGAA TGAATTGTGTATCGGTATGAAAAATGCGATTTCTCTATGGGCGCCCTTGT CTCGTCTGCTCAAGGAAGAATTGTTGCACCGCTTCGTGGCCCGTGTCACA AAAGGTGCCATCAGCTTGACTTACGGCCAAGTTCGTCGAACGATGGAGCA ACTGGAGAGAGATGAGAATGAGACGGAGGGAGGACGGAAAAAGAAGTTAG AATGGCGCCTGGATGTAGGAGACGGGTGGGTGTTGGGTCGGCAGGGCGAT GTGTTACGGGTAATAAAGGATGAAATAGGTCTAGAAGGAGCAAGCCGTAT GATCTCCATGCACGAGACAGGCCTCACTTTTTCCGTGCCTACAGGTTGGG AAGTAGAGGCGAAGCGCATAGAGATCTCTCTTTCTCCTTCATCAGAAGAG TGGGATTTGATCCTCCCTCATGTCCCCACGGGAGCCCGTCTCCTGCTTCG GCACCGGCAAGACGGCGACCGCTTCCACCCTGCATGGCGCTCGGGTTCTA TCAAGCTCAAAGACTTTCTGCGGGGTCAAAATGTGCCCTTGCACCGACGG GACGAGATCTTACTGGTGGTGTTGCTGTCGGCCAGTGGGAAGGAGGAGGA GGAGGAGGCGGAGGAGGAGGAAAGAGTATTGGGTCTCTACCCAACAGGGC ACGTGGCAGCGGCGCCTGCGGGAGCAAATGTTAATGTACAACCTTTGGGG TTGCGATTTAAAAGAGAGGGATTATGAACGTGTAAAAAGTAATGTAAAGA AAAAAGAATCGGAAAGAATGACA back to topprotein sequence of NO11G02430.1 >NO11G02430.1-protein ID=NO11G02430.1-protein|Name=NO11G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp MSWRRLWRPRSQIIPVIAMLLLRGSFTTHVRAATVVVPSTSGRTAAFILP INTRTRAHPLHRTPSIYSSSATVTTTPSQGHDDAARLLDEIEASLKGPCG LPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNH GLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRR AECERLVRELQQQQRGGAAAKPTAAQGVIATAHHADDSLETWAMKLLRGT HLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYK RNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGR HSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGA ISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLR VIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEEWDL ILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRRDEI LLVVLLSASGKEEEEEAEEEERVLGLYPTGHVAAAPAGANVNVQPLGLRF KREGL* back to topmRNA from alignment at chr11:770837..772809- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02430.1 ID=NO11G02430.1|Name=NO11G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1973bp|location=Sequence derived from alignment at chr11:770837..772809- (Nannochloropsis oceanica) CAGGTCAGGACGTTGAGGGGCTCCTGGCCGCCATGATAACCAGGCATCTT
TAAGCACAAGCACCCTCGCCACCATCTACTACCGTCAGGCCTTTACATTG
GCATCGTACATGTCCTGGAGGAGGCTGTGGCGTCCACGCAGCCAGATCAT
CCCCGTCATTGCCATGCTTCTGCTGCGGGGCTCATTCACTACTCATGTGC
GGGCCGCGACTGTCGTCGTCCCCAGCACAAGTGGCAGGACAGCAGCATTC
ATTCTTCCCATCAACACAAGAACACGCGCTCACCCGCTTCATCGGACACC
TTCCATCTACTCCTCATCTGCTACTGTGACCACTACCCCATCCCAAGGTC
ACGATGACGCTGCCCGCCTACTAGATGAGATCGAAGCCTCTCTCAAAGGC
CCTTGTGGCTTACCCAACGGCCAGGGAACCATGCCGTTTCACACCATCGT
TGTCGCTGTTTCGGGTGGAGCAGATTCCATGGCTTTATTGCACCTCTTGG
CCCGGGTTCGTGCCCGATGGGACCCGCCTCTCAGCCTTACTGTCGCGCAT
TTCAATCACGGCTTGCGTCCCGAGGCAGCGCAGGAAGAAGAGGTGTTTGT
CCGCAACGCAGCAGCAACTTTGCAGGTACCCATGCACGTCGTAGTGTGGG
GAGAGGTGGAGCGGGCGCAAACCACGGCCATCCAAGAACGGGCCCGGGGT
TGGCGCCGAGCCGAATGCGAGCGACTCGTGCGGGAGCTGCAGCAGCAGCA
GAGAGGAGGAGCAGCAGCAAAACCAACAGCAGCGCAAGGTGTGATTGCCA
CGGCGCACCATGCCGACGATTCTCTTGAGACCTGGGCGATGAAACTCTTG
CGAGGGACACATTTAAGCCACACAAAAGGAATGGCACCACGCGCGGGCAT
TTATGTCAAGCCCCTGTTAAACGTCCGCAAAGAAAGACTCGTTCGCTTCC
TGGAATCCCAAGGCCTGGAATGGAAAGAAGACGAGTCCAACCAGATTGAT
AAGTACAAACGGAATAAGGTACGTTTGAAGTTGTTGCCATTGATGGCTGA
GGTGGCCGGGGGCGAAGCTGCCTTGATGGCAAGGATGGAGGAGATGACCT
GCCAAAGCAAGGGGTTGGAGGAGTGGTTGGCCCATGAGGCGAGTGCCTGG
GAGGGACGCCATTCAGCAGAGGCACCGTTGGATATCGTTCAAAGTGGGAA
TGAATTGTGTATCGGTATGAAAAATGCGATTTCTCTATGGGCGCCCTTGT
CTCGTCTGCTCAAGGAAGAATTGTTGCACCGCTTCGTGGCCCGTGTCACA
AAAGGTGCCATCAGCTTGACTTACGGCCAAGTTCGTCGAACGATGGAGCA
ACTGGAGAGAGATGAGAATGAGACGGAGGGAGGACGGAAAAAGAAGTTAG
AATGGCGCCTGGATGTAGGAGACGGGTGGGTGTTGGGTCGGCAGGGCGAT
GTGTTACGGGTAATAAAGGATGAAATAGGTCTAGAAGGAGCAAGCCGTAT
GATCTCCATGCACGAGACAGGCCTCACTTTTTCCGTGCCTACAGGTTGGG
AAGTAGAGGCGAAGCGCATAGAGATCTCTCTTTCTCCTTCATCAGAAGAG
TGGGATTTGATCCTCCCTCATGTCCCCACGGGAGCCCGTCTCCTGCTTCG
GCACCGGCAAGACGGCGACCGCTTCCACCCTGCATGGCGCTCGGGTTCTA
TCAAGCTCAAAGACTTTCTGCGGGGTCAAAATGTGCCCTTGCACCGACGG
GACGAGATCTTACTGGTGGTGTTGCTGTCGGCCAGTGGGAAGGAGGAGGA
GGAGGAGGCGGAGGAGGAGGAAAGAGTATTGGGTCTCTACCCAACAGGGC
ACGTGGCAGCGGCGCCTGCGGGAGCAAATGTTAATGTACAACCTTTGGGG
TTGCGATTTAAAAGAGAGGGATTATGAACGTGTAAAAAGTAATGTAAAGA
AAAAAGAATCGGAAAGAATGACA back to topCoding sequence (CDS) from alignment at chr11:770837..772809- >NO11G02430.1 ID=NO11G02430.1|Name=NO11G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at chr11:770837..772809- (Nannochloropsis oceanica) ATGTCCTGGAGGAGGCTGTGGCGTCCACGCAGCCAGATCATCCCCGTCAT TGCCATGCTTCTGCTGCGGGGCTCATTCACTACTCATGTGCGGGCCGCGA CTGTCGTCGTCCCCAGCACAAGTGGCAGGACAGCAGCATTCATTCTTCCC ATCAACACAAGAACACGCGCTCACCCGCTTCATCGGACACCTTCCATCTA CTCCTCATCTGCTACTGTGACCACTACCCCATCCCAAGGTCACGATGACG CTGCCCGCCTACTAGATGAGATCGAAGCCTCTCTCAAAGGCCCTTGTGGC TTACCCAACGGCCAGGGAACCATGCCGTTTCACACCATCGTTGTCGCTGT TTCGGGTGGAGCAGATTCCATGGCTTTATTGCACCTCTTGGCCCGGGTTC GTGCCCGATGGGACCCGCCTCTCAGCCTTACTGTCGCGCATTTCAATCAC GGCTTGCGTCCCGAGGCAGCGCAGGAAGAAGAGGTGTTTGTCCGCAACGC AGCAGCAACTTTGCAGGTACCCATGCACGTCGTAGTGTGGGGAGAGGTGG AGCGGGCGCAAACCACGGCCATCCAAGAACGGGCCCGGGGTTGGCGCCGA GCCGAATGCGAGCGACTCGTGCGGGAGCTGCAGCAGCAGCAGAGAGGAGG AGCAGCAGCAAAACCAACAGCAGCGCAAGGTGTGATTGCCACGGCGCACC ATGCCGACGATTCTCTTGAGACCTGGGCGATGAAACTCTTGCGAGGGACA CATTTAAGCCACACAAAAGGAATGGCACCACGCGCGGGCATTTATGTCAA GCCCCTGTTAAACGTCCGCAAAGAAAGACTCGTTCGCTTCCTGGAATCCC AAGGCCTGGAATGGAAAGAAGACGAGTCCAACCAGATTGATAAGTACAAA CGGAATAAGGTACGTTTGAAGTTGTTGCCATTGATGGCTGAGGTGGCCGG GGGCGAAGCTGCCTTGATGGCAAGGATGGAGGAGATGACCTGCCAAAGCA AGGGGTTGGAGGAGTGGTTGGCCCATGAGGCGAGTGCCTGGGAGGGACGC CATTCAGCAGAGGCACCGTTGGATATCGTTCAAAGTGGGAATGAATTGTG TATCGGTATGAAAAATGCGATTTCTCTATGGGCGCCCTTGTCTCGTCTGC TCAAGGAAGAATTGTTGCACCGCTTCGTGGCCCGTGTCACAAAAGGTGCC ATCAGCTTGACTTACGGCCAAGTTCGTCGAACGATGGAGCAACTGGAGAG AGATGAGAATGAGACGGAGGGAGGACGGAAAAAGAAGTTAGAATGGCGCC TGGATGTAGGAGACGGGTGGGTGTTGGGTCGGCAGGGCGATGTGTTACGG GTAATAAAGGATGAAATAGGTCTAGAAGGAGCAAGCCGTATGATCTCCAT GCACGAGACAGGCCTCACTTTTTCCGTGCCTACAGGTTGGGAAGTAGAGG CGAAGCGCATAGAGATCTCTCTTTCTCCTTCATCAGAAGAGTGGGATTTG ATCCTCCCTCATGTCCCCACGGGAGCCCGTCTCCTGCTTCGGCACCGGCA AGACGGCGACCGCTTCCACCCTGCATGGCGCTCGGGTTCTATCAAGCTCA AAGACTTTCTGCGGGGTCAAAATGTGCCCTTGCACCGACGGGACGAGATC TTACTGGTGGTGTTGCTGTCGGCCAGTGGGAAGGAGGAGGAGGAGGAGGC GGAGGAGGAGGAAAGAGTATTGGGTCTCTACCCAACAGGGCACGTGGCAG CGGCGCCTGCGGGAGCAAATGTTAATGTACAACCTTTGGGGTTGCGATTT AAAAGAGAGGGATTATGA back to top
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